Wall clock time and date at job start Mon Mar 30 2020 01:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47142 * 2 1 4 4 C 1.34222 * 116.99867 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00323 * 359.72425 * 4 3 2 6 6 C 1.50706 * 120.00024 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47012 * 59.71777 * 6 4 3 8 8 C 1.50696 * 109.47259 * 179.72462 * 6 4 3 9 9 O 1.21287 * 120.00133 * 119.99943 * 8 6 4 10 10 N 1.34775 * 120.00023 * 299.99998 * 8 6 4 11 11 C 1.37101 * 120.00098 * 180.02562 * 10 8 6 12 12 H 1.08000 * 119.99750 * 359.97438 * 11 10 8 13 13 C 1.38946 * 119.99892 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00153 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99868 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47254 * 60.00165 * 15 13 11 17 17 H 1.48508 * 109.47219 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47145 * 299.99904 * 15 13 11 19 19 C 1.50704 * 109.46672 * 299.72508 * 6 4 3 20 20 C 1.38235 * 119.99717 * 299.72139 * 19 6 4 21 21 C 1.38239 * 119.99384 * 179.81420 * 20 19 6 22 22 C 1.38237 * 120.00320 * 0.40008 * 21 20 19 23 23 C 1.38233 * 119.99659 * 359.85257 * 22 21 20 24 24 C 1.38235 * 120.00513 * 359.95989 * 23 22 21 25 25 H 1.09009 * 109.46963 * 299.99598 * 1 2 3 26 26 H 1.08997 * 109.47571 * 60.00140 * 1 2 3 27 27 H 1.09004 * 109.46957 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46963 * 240.00402 * 2 1 3 29 29 H 1.09001 * 109.47306 * 120.00307 * 2 1 3 30 30 H 0.97001 * 120.00100 * 0.02562 * 10 8 6 31 31 H 0.96999 * 119.99628 * 180.02562 * 14 13 11 32 32 H 1.07995 * 120.00216 * 0.02562 * 20 19 6 33 33 H 1.08004 * 119.99638 * 180.23214 * 21 20 19 34 34 H 1.08000 * 120.00241 * 179.83615 * 22 21 20 35 35 H 1.08007 * 119.99913 * 179.97438 * 23 22 21 36 36 H 1.08000 * 120.00461 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5866 0.0040 6 6 3.9207 2.9374 0.0000 7 1 3.5812 3.4707 0.8879 8 6 5.4256 2.8585 0.0061 9 8 6.0623 3.3501 -0.9017 10 7 6.0640 2.2417 1.0202 11 6 7.4331 2.1704 1.0260 12 1 8.0000 2.6082 0.2177 13 6 8.0913 1.5350 2.0718 14 7 7.4014 1.0028 3.0556 15 14 9.9567 1.4372 2.0793 16 1 10.5244 2.8095 2.0792 17 1 10.4097 0.7148 3.2952 18 1 10.4192 0.7101 0.8699 19 6 3.4611 3.6715 -1.2333 20 6 3.7797 3.1839 -2.4869 21 6 3.3548 3.8552 -3.6181 22 6 2.6183 5.0187 -3.4957 23 6 2.3042 5.5091 -2.2420 24 6 2.7257 4.8357 -1.1108 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.5548 1.8482 1.7460 31 1 7.8610 0.5595 3.7858 32 1 4.3577 2.2766 -2.5825 33 1 3.6005 3.4722 -4.5976 34 1 2.2886 5.5446 -4.3795 35 1 1.7291 6.4183 -2.1463 36 1 2.4807 5.2191 -0.1313 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416148609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:48 Heat of formation + Delta-G solvation = -120.682452 kcal Electronic energy + Delta-G solvation = -21468.528401 eV Core-core repulsion = 18109.843781 eV Total energy + Delta-G solvation = -3358.684620 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.09562 -40.37295 -39.47441 -37.70840 -36.10205 -34.27604 -33.28517 -32.45680 -31.76304 -29.48971 -26.88663 -24.60374 -23.54982 -22.95732 -22.71204 -20.86661 -19.95635 -18.95051 -18.27521 -17.95671 -17.48337 -17.04038 -16.62337 -16.22445 -15.72534 -15.43638 -15.14607 -15.04923 -14.65907 -14.23006 -14.10690 -13.63240 -13.62369 -13.51203 -13.37360 -12.94463 -12.91717 -12.52953 -12.49474 -12.20875 -12.13107 -11.92857 -11.66855 -11.56791 -11.49382 -10.57570 -10.08308 -9.75045 -9.66786 -8.51974 -6.01190 0.37509 0.55150 1.00429 1.21431 1.38367 1.46555 1.51231 2.09478 2.25873 2.75711 3.14813 3.21391 3.45398 3.70785 3.84657 3.98308 4.07666 4.17229 4.23031 4.26530 4.32474 4.33653 4.65883 4.73829 4.81316 4.92487 5.03652 5.10025 5.17555 5.34789 5.36039 5.56865 5.63123 5.67185 5.89717 6.14089 6.47244 6.58511 7.02490 7.42689 7.94955 8.65328 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.015986 B = 0.005932 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.134748 B = 4718.788034 C = 6019.679796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 O -0.345 6.345 4 C 0.478 3.522 5 O -0.523 6.523 6 C -0.050 4.050 7 H 0.154 0.846 8 C 0.450 3.550 9 O -0.611 6.611 10 N -0.548 5.548 11 C -0.336 4.336 12 H 0.084 0.916 13 C -0.012 4.012 14 N -0.917 5.917 15 Si 0.999 3.001 16 H -0.265 1.265 17 H -0.268 1.268 18 H -0.274 1.274 19 C -0.077 4.077 20 C -0.107 4.107 21 C -0.131 4.131 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.107 4.107 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.392 0.608 31 H 0.280 0.720 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.476 3.871 -6.021 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 O -0.261 6.261 4 C 0.320 3.680 5 O -0.411 6.411 6 C -0.072 4.072 7 H 0.172 0.828 8 C 0.236 3.764 9 O -0.498 6.498 10 N -0.182 5.182 11 C -0.466 4.466 12 H 0.102 0.898 13 C -0.212 4.212 14 N -0.557 5.557 15 Si 0.822 3.178 16 H -0.190 1.190 17 H -0.192 1.192 18 H -0.199 1.199 19 C -0.077 4.077 20 C -0.125 4.125 21 C -0.149 4.149 22 C -0.131 4.131 23 C -0.137 4.137 24 C -0.125 4.125 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.226 0.774 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.805 3.751 -6.418 17.467 hybrid contribution 1.119 -0.976 0.611 1.605 sum -14.687 2.776 -5.807 16.035 Atomic orbital electron populations 1.21805 0.89309 1.04551 1.04001 1.23398 0.97764 0.79068 1.02341 1.86499 1.22311 1.33849 1.83483 1.23258 0.81404 0.91387 0.71908 1.90770 1.61198 1.43585 1.45581 1.20117 0.92922 0.91681 1.02456 0.82825 1.19601 0.88464 0.84141 0.84164 1.90513 1.67966 1.53030 1.38288 1.41811 1.07148 1.48093 1.21148 1.19719 0.82331 1.36300 1.08205 0.89804 1.26184 1.05531 0.95180 0.94342 1.69697 1.38515 1.36597 1.10878 0.84910 0.75977 0.78938 0.77991 1.18989 1.19186 1.19885 1.18958 1.00096 0.97249 0.91416 1.20894 0.98108 0.99929 0.93589 1.21308 0.99000 0.96708 0.97912 1.21546 0.97277 0.95225 0.99008 1.21491 1.00032 1.00579 0.91601 1.21306 0.96868 0.93193 1.01089 0.90770 0.91063 0.87923 0.91918 0.91526 0.77442 0.91082 0.89966 0.84636 0.82622 0.82190 0.83482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 10.29 71.98 0.74 -1.58 16 2 C 0.05 1.24 6.19 71.98 0.45 1.68 16 3 O -0.34 -11.01 10.14 -51.34 -0.52 -11.53 16 4 C 0.48 18.94 6.76 71.24 0.48 19.42 16 5 O -0.52 -24.95 15.14 21.95 0.33 -24.62 16 6 C -0.05 -1.96 2.82 -13.03 -0.04 -1.99 16 7 H 0.15 4.97 7.88 -2.39 -0.02 4.95 16 8 C 0.45 23.31 6.47 87.66 0.57 23.88 16 9 O -0.61 -35.45 14.66 -3.05 -0.04 -35.49 16 10 N -0.55 -30.62 4.68 -307.00 -1.44 -32.06 16 11 C -0.34 -20.12 9.68 84.04 0.81 -19.31 16 12 H 0.08 5.25 7.16 -2.91 -0.02 5.23 16 13 C -0.01 -0.67 5.50 84.92 0.47 -0.21 16 14 N -0.92 -51.97 13.05 21.66 0.28 -51.69 16 15 Si 1.00 44.36 29.55 68.60 2.03 46.39 16 16 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 C -0.08 -2.73 4.33 -19.86 -0.09 -2.81 16 20 C -0.11 -3.97 8.03 22.27 0.18 -3.80 16 21 C -0.13 -3.79 10.05 22.27 0.22 -3.57 16 22 C -0.11 -2.56 10.05 22.27 0.22 -2.33 16 23 C -0.12 -2.63 10.05 22.27 0.22 -2.41 16 24 C -0.11 -2.92 9.67 22.27 0.22 -2.70 16 25 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 30 H 0.39 21.52 7.58 -92.71 -0.70 20.82 16 31 H 0.28 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.08 3.56 7.98 -2.91 -0.02 3.53 16 33 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 34 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 35 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.15 3.17 7.95 -2.91 -0.02 3.15 16 Total: -1.00 -76.34 320.15 5.49 -70.85 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.39 Total: 33.87 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 4.46 Total: 4.28 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -1.15 Total: -83.75 kcal Atomic # 8 Polarization: -71.40 SS G_CDS: -0.23 Total: -71.64 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -76.34 5.49 -70.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416148609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.833 kcal (2) G-P(sol) polarization free energy of solvation -76.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds