Wall clock time and date at job start Mon Mar 30 2020 01:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45196 * 109.47185 * 2 1 4 4 C 1.34232 * 117.00097 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99771 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00124 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.47056 * 300.00212 * 6 4 3 8 8 C 1.50701 * 109.47473 * 180.02562 * 6 4 3 9 9 O 1.21296 * 119.99580 * 359.97438 * 8 6 4 10 10 N 1.34774 * 120.00481 * 180.02562 * 8 6 4 11 11 C 1.37090 * 120.00312 * 179.97438 * 10 8 6 12 12 H 1.08008 * 119.99892 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00372 * 179.97438 * 11 10 8 14 14 N 1.31411 * 119.99967 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00187 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47320 * 90.00034 * 15 13 11 17 17 H 1.48503 * 109.47145 * 209.99973 * 15 13 11 18 18 H 1.48494 * 109.47171 * 329.99728 * 15 13 11 19 19 C 1.50703 * 109.47376 * 60.00073 * 6 4 3 20 20 C 1.38235 * 120.00292 * 240.00176 * 19 6 4 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 6 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 59.97469 * 19 6 4 25 25 H 1.08997 * 109.47020 * 59.99791 * 1 2 3 26 26 H 1.08993 * 109.46992 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47106 * 299.99863 * 1 2 3 28 28 H 1.09006 * 109.47207 * 239.99886 * 2 1 3 29 29 H 1.08997 * 109.47020 * 120.00209 * 2 1 3 30 30 H 0.97005 * 119.99390 * 359.97438 * 10 8 6 31 31 H 0.97000 * 120.00489 * 179.97438 * 14 13 11 32 32 H 1.08001 * 119.99730 * 359.97438 * 20 19 6 33 33 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 34 34 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 35 35 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 36 36 H 1.07997 * 120.00455 * 0.02562 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5851 3.4698 -0.8888 8 6 5.4257 2.8585 0.0010 9 8 5.9764 1.7778 0.0010 10 7 6.1598 3.9888 0.0021 11 6 7.5288 3.9171 0.0025 12 1 8.0192 2.9547 0.0024 13 6 8.2857 5.0824 0.0030 14 7 7.6891 6.2533 0.0036 15 14 10.1511 4.9846 0.0028 16 1 10.6454 4.9593 -1.3973 17 1 10.7089 6.1692 0.7034 18 1 10.5820 3.7476 0.7023 19 6 3.4559 3.6728 1.2317 20 6 2.7212 4.8368 1.1050 21 6 2.2944 5.5110 2.2337 22 6 2.6015 5.0208 3.4892 23 6 3.3351 3.8560 3.6159 24 6 3.7639 3.1829 2.4871 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.7194 4.8531 0.0025 31 1 8.2174 7.0668 0.0043 32 1 2.4806 5.2194 0.1241 33 1 1.7206 6.4206 2.1348 34 1 2.2719 5.5499 4.3711 35 1 3.5755 3.4732 4.5967 36 1 4.3379 2.2735 2.5861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416148612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:50 Heat of formation + Delta-G solvation = -97.706572 kcal Electronic energy + Delta-G solvation = -21503.521281 eV Core-core repulsion = 18145.832970 eV Total energy + Delta-G solvation = -3357.688311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48115 -38.92086 -37.85050 -36.04773 -33.89102 -33.03144 -31.51181 -31.02204 -30.65941 -27.99563 -25.00091 -23.34906 -22.41620 -21.76074 -21.14402 -19.07606 -17.91712 -17.47151 -16.79552 -16.22157 -15.69898 -15.55630 -15.15751 -14.63641 -14.19886 -13.95413 -13.84215 -13.36423 -13.15832 -13.06870 -12.73145 -12.54408 -12.18239 -12.07767 -11.69977 -11.52712 -11.47757 -11.10331 -10.94728 -10.79764 -10.38697 -10.30397 -10.22368 -9.91096 -9.50867 -8.82217 -8.66109 -8.07040 -7.96098 -6.42260 -3.82574 1.52437 1.66002 2.67311 2.86464 3.17948 3.27139 3.33816 3.81384 4.00440 4.19407 4.82598 4.90577 4.95165 4.99465 5.09277 5.12101 5.21009 5.28492 5.30851 5.36259 5.58674 5.68640 5.73906 5.76454 5.85495 5.92480 6.12928 6.24397 6.28754 6.66264 6.72054 6.74325 6.81419 7.21168 7.54919 8.02034 8.24788 8.59138 9.16039 9.50163 10.01951 10.75008 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.005876 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.204929 B = 4763.648802 C = 5869.889030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.469 3.531 5 O -0.453 6.453 6 C -0.055 4.055 7 H 0.123 0.877 8 C 0.446 3.554 9 O -0.553 6.553 10 N -0.550 5.550 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.025 3.975 14 N -0.897 5.897 15 Si 0.930 3.070 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.269 1.269 19 C -0.067 4.067 20 C -0.100 4.100 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.099 4.099 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.393 0.607 31 H 0.272 0.728 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.974 -2.169 3.194 15.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.308 3.692 5 O -0.335 6.335 6 C -0.078 4.078 7 H 0.140 0.860 8 C 0.229 3.771 9 O -0.435 6.435 10 N -0.186 5.186 11 C -0.428 4.428 12 H 0.122 0.878 13 C -0.177 4.177 14 N -0.538 5.538 15 Si 0.757 3.243 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.068 4.068 20 C -0.118 4.118 21 C -0.137 4.137 22 C -0.138 4.138 23 C -0.136 4.136 24 C -0.117 4.117 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.227 0.773 31 H 0.082 0.918 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.272 -3.059 3.194 14.942 hybrid contribution 0.704 0.522 -0.037 0.877 sum -13.569 -2.537 3.157 14.160 Atomic orbital electron populations 1.21777 0.92972 1.02553 1.03374 1.22924 0.94973 0.80971 1.02423 1.86505 1.24940 1.31624 1.84928 1.22867 0.80310 0.91866 0.74185 1.90790 1.59468 1.41766 1.41435 1.19981 0.97445 0.91061 0.99309 0.85953 1.18913 0.85849 0.85868 0.86431 1.90682 1.71165 1.27319 1.54328 1.41710 1.06739 1.06503 1.63685 1.19719 0.80567 0.94779 1.47747 0.87782 1.25259 1.00737 0.94570 0.97131 1.69619 1.36650 0.97497 1.49998 0.85854 0.82090 0.77915 0.78433 1.20342 1.20887 1.19359 1.19207 0.98741 0.95977 0.92871 1.21014 0.97279 0.94441 0.99109 1.21041 1.00530 0.99713 0.92431 1.21109 0.98948 0.96324 0.97396 1.21052 0.98456 0.95818 0.98227 1.21061 0.98431 1.00174 0.92009 0.91607 0.90587 0.91587 0.91474 0.91518 0.77291 0.91806 0.85657 0.86008 0.86308 0.86166 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 37.16 0.38 -1.00 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.36 -5.82 10.14 -39.26 -0.40 -6.22 16 4 C 0.47 9.14 6.88 36.00 0.25 9.39 16 5 O -0.45 -10.49 13.93 -26.86 -0.37 -10.86 16 6 C -0.06 -1.06 2.82 -94.08 -0.26 -1.33 16 7 H 0.12 2.00 7.88 -51.93 -0.41 1.59 16 8 C 0.45 10.98 6.74 -10.99 -0.07 10.91 16 9 O -0.55 -15.86 13.76 -18.97 -0.26 -16.12 16 10 N -0.55 -14.16 5.19 -10.96 -0.06 -14.21 16 11 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 12 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 13 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 14 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 15 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 C -0.07 -1.17 4.50 -104.62 -0.47 -1.64 16 20 C -0.10 -1.48 9.67 -39.59 -0.38 -1.87 16 21 C -0.12 -1.58 10.05 -39.59 -0.40 -1.98 16 22 C -0.12 -1.59 10.05 -39.58 -0.40 -1.98 16 23 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 24 C -0.10 -1.74 8.92 -39.58 -0.35 -2.10 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.39 9.72 7.78 -40.82 -0.32 9.40 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.13 1.57 7.95 -52.49 -0.42 1.15 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.12 2.33 8.05 -52.49 -0.42 1.90 16 LS Contribution 320.26 15.07 4.83 4.83 Total: -1.00 -33.57 320.26 -7.14 -40.71 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -4.46 Total: 10.03 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -2.12 Total: -0.67 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.67 Total: -37.81 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -1.03 Total: -33.20 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.57 -7.14 -40.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416148612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.997 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds