Wall clock time and date at job start Mon Mar 30 2020 01:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45196 * 109.47185 * 2 1 4 4 C 1.34232 * 117.00097 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99771 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00124 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.47056 * 300.00212 * 6 4 3 8 8 C 1.50701 * 109.47473 * 180.02562 * 6 4 3 9 9 O 1.21296 * 119.99580 * 359.97438 * 8 6 4 10 10 N 1.34774 * 120.00481 * 180.02562 * 8 6 4 11 11 C 1.37090 * 120.00312 * 179.97438 * 10 8 6 12 12 H 1.08008 * 119.99892 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00372 * 179.97438 * 11 10 8 14 14 N 1.31411 * 119.99967 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00187 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47320 * 90.00034 * 15 13 11 17 17 H 1.48503 * 109.47145 * 209.99973 * 15 13 11 18 18 H 1.48494 * 109.47171 * 329.99728 * 15 13 11 19 19 C 1.50703 * 109.47376 * 60.00073 * 6 4 3 20 20 C 1.38235 * 120.00292 * 240.00176 * 19 6 4 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 6 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 59.97469 * 19 6 4 25 25 H 1.08997 * 109.47020 * 59.99791 * 1 2 3 26 26 H 1.08993 * 109.46992 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47106 * 299.99863 * 1 2 3 28 28 H 1.09006 * 109.47207 * 239.99886 * 2 1 3 29 29 H 1.08997 * 109.47020 * 120.00209 * 2 1 3 30 30 H 0.97005 * 119.99390 * 359.97438 * 10 8 6 31 31 H 0.97000 * 120.00489 * 179.97438 * 14 13 11 32 32 H 1.08001 * 119.99730 * 359.97438 * 20 19 6 33 33 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 34 34 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 35 35 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 36 36 H 1.07997 * 120.00455 * 0.02562 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5851 3.4698 -0.8888 8 6 5.4257 2.8585 0.0010 9 8 5.9764 1.7778 0.0010 10 7 6.1598 3.9888 0.0021 11 6 7.5288 3.9171 0.0025 12 1 8.0192 2.9547 0.0024 13 6 8.2857 5.0824 0.0030 14 7 7.6891 6.2533 0.0036 15 14 10.1511 4.9846 0.0028 16 1 10.6454 4.9593 -1.3973 17 1 10.7089 6.1692 0.7034 18 1 10.5820 3.7476 0.7023 19 6 3.4559 3.6728 1.2317 20 6 2.7212 4.8368 1.1050 21 6 2.2944 5.5110 2.2337 22 6 2.6015 5.0208 3.4892 23 6 3.3351 3.8560 3.6159 24 6 3.7639 3.1829 2.4871 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.7194 4.8531 0.0025 31 1 8.2174 7.0668 0.0043 32 1 2.4806 5.2194 0.1241 33 1 1.7206 6.4206 2.1348 34 1 2.2719 5.5499 4.3711 35 1 3.5755 3.4732 4.5967 36 1 4.3379 2.2735 2.5861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416148612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:50 Heat of formation + Delta-G solvation = -118.147007 kcal Electronic energy + Delta-G solvation = -21504.407645 eV Core-core repulsion = 18145.832970 eV Total energy + Delta-G solvation = -3358.574675 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.01002 -40.30578 -39.51918 -37.57008 -35.95945 -34.48827 -33.11471 -32.42682 -31.80551 -29.37961 -26.99420 -24.51681 -23.58830 -22.96809 -22.66416 -20.86642 -19.95790 -18.92734 -18.12658 -17.56173 -17.34890 -17.08574 -16.54605 -16.38093 -15.75622 -15.44647 -15.24541 -14.91472 -14.63092 -14.28314 -14.04565 -13.64297 -13.56226 -13.50923 -13.41357 -12.92628 -12.85364 -12.50736 -12.44926 -12.22076 -12.12608 -11.95662 -11.55059 -11.50959 -11.44919 -10.49892 -10.04751 -9.81647 -9.59480 -8.49049 -5.97920 0.33002 0.50402 1.14255 1.36244 1.39668 1.47399 1.56848 1.93838 2.29627 2.78213 3.14776 3.18435 3.58479 3.68362 3.86723 3.99288 4.09629 4.10755 4.22465 4.31046 4.32367 4.35891 4.62533 4.70304 4.84410 4.92989 5.00214 5.12675 5.14639 5.38653 5.41253 5.54608 5.59371 5.60939 5.93173 6.09955 6.53751 6.76892 7.07848 7.46242 8.03196 8.67936 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.005876 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.204929 B = 4763.648802 C = 5869.889030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.049 3.951 3 O -0.351 6.351 4 C 0.475 3.525 5 O -0.500 6.500 6 C -0.047 4.047 7 H 0.154 0.846 8 C 0.444 3.556 9 O -0.602 6.602 10 N -0.552 5.552 11 C -0.337 4.337 12 H 0.077 0.923 13 C -0.005 4.005 14 N -0.911 5.911 15 Si 0.992 3.008 16 H -0.269 1.269 17 H -0.267 1.267 18 H -0.276 1.276 19 C -0.087 4.087 20 C -0.102 4.102 21 C -0.114 4.114 22 C -0.112 4.112 23 C -0.124 4.124 24 C -0.129 4.129 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.398 0.602 31 H 0.280 0.720 32 H 0.150 0.850 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.137 0.863 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.878 0.014 3.673 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 O -0.269 6.269 4 C 0.316 3.684 5 O -0.386 6.386 6 C -0.070 4.070 7 H 0.171 0.829 8 C 0.229 3.771 9 O -0.487 6.487 10 N -0.189 5.189 11 C -0.466 4.466 12 H 0.095 0.905 13 C -0.206 4.206 14 N -0.551 5.551 15 Si 0.815 3.185 16 H -0.194 1.194 17 H -0.191 1.191 18 H -0.201 1.201 19 C -0.088 4.088 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.142 4.142 24 C -0.147 4.147 25 H 0.092 0.908 26 H 0.121 0.879 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.233 0.767 31 H 0.090 0.910 32 H 0.168 0.832 33 H 0.178 0.822 34 H 0.173 0.827 35 H 0.155 0.845 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.229 -0.839 3.672 16.660 hybrid contribution 1.187 -0.158 -0.133 1.205 sum -15.042 -0.997 3.538 15.484 Atomic orbital electron populations 1.21795 0.89392 1.04496 1.03930 1.23335 0.97647 0.79284 1.02150 1.86491 1.22659 1.33660 1.84044 1.22949 0.81136 0.91473 0.72886 1.90770 1.60802 1.43148 1.43909 1.19819 0.93241 0.91895 1.02011 0.82896 1.19744 0.88233 0.84720 0.84357 1.90645 1.73106 1.28997 1.55946 1.41683 1.06217 1.07000 1.63973 1.19650 0.82026 0.94364 1.50577 0.90535 1.26003 1.04863 0.93851 0.95849 1.69665 1.38272 0.97913 1.49268 0.84951 0.76736 0.77980 0.78801 1.19390 1.19144 1.20114 1.19127 1.00825 0.97367 0.91444 1.21341 0.96341 0.93146 1.01197 1.21532 0.99554 1.00384 0.91660 1.21568 0.97194 0.95211 0.99038 1.21307 0.98487 0.96439 0.97984 1.21001 0.99961 1.00064 0.93713 0.90799 0.87928 0.91202 0.91621 0.92164 0.76744 0.91040 0.83209 0.82224 0.82676 0.84517 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 10.29 71.98 0.74 -1.53 16 2 C 0.05 1.27 6.19 71.98 0.45 1.72 16 3 O -0.35 -11.31 10.14 -51.43 -0.52 -11.83 16 4 C 0.47 19.20 6.88 71.23 0.49 19.69 16 5 O -0.50 -24.65 13.93 29.71 0.41 -24.24 16 6 C -0.05 -1.87 2.82 -13.03 -0.04 -1.90 16 7 H 0.15 4.92 7.88 -2.38 -0.02 4.91 16 8 C 0.44 22.94 6.74 87.66 0.59 23.53 16 9 O -0.60 -36.84 13.76 20.36 0.28 -36.56 16 10 N -0.55 -29.43 5.19 -306.98 -1.59 -31.02 16 11 C -0.34 -19.65 9.68 84.04 0.81 -18.83 16 12 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 13 C 0.00 -0.26 5.50 84.93 0.47 0.21 16 14 N -0.91 -48.87 13.05 21.66 0.28 -48.59 16 15 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 19 C -0.09 -3.02 4.50 -19.87 -0.09 -3.11 16 20 C -0.10 -2.77 9.67 22.27 0.22 -2.55 16 21 C -0.11 -2.55 10.05 22.27 0.22 -2.33 16 22 C -0.11 -2.58 10.05 22.27 0.22 -2.36 16 23 C -0.12 -3.56 10.05 22.27 0.22 -3.33 16 24 C -0.13 -4.69 8.92 22.27 0.20 -4.49 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.71 8.13 -2.38 -0.02 1.69 16 29 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 30 H 0.40 20.01 7.78 -92.70 -0.72 19.28 16 31 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 32 H 0.15 3.22 7.95 -2.91 -0.02 3.20 16 33 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 35 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.09 3.62 8.05 -2.91 -0.02 3.60 16 Total: -1.00 -76.67 320.26 5.77 -70.90 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.38 Total: 31.23 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.51 Total: 4.70 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -1.31 Total: -79.61 kcal Atomic # 8 Polarization: -72.79 SS G_CDS: 0.17 Total: -72.62 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -76.67 5.77 -70.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416148612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.248 kcal (2) G-P(sol) polarization free energy of solvation -76.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds