Wall clock time and date at job start Mon Mar 30 2020 01:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00059 * 2 1 4 4 O 1.20826 * 119.99943 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00049 * 179.97438 * 3 2 1 6 6 H 1.09009 * 109.46466 * 60.00065 * 5 3 2 7 7 C 1.53002 * 109.47537 * 300.00624 * 5 3 2 8 8 C 1.50692 * 109.47390 * 179.97438 * 5 3 2 9 9 C 1.38339 * 119.91410 * 59.73057 * 8 5 3 10 10 C 1.38058 * 120.08664 * 179.76787 * 9 8 5 11 11 C 1.39030 * 119.91133 * 0.48281 * 10 9 8 12 12 N 1.39531 * 120.07935 * 179.79134 * 11 10 9 13 13 C 1.34779 * 119.99848 * 213.37703 * 12 11 10 14 14 O 1.21743 * 119.99971 * 5.27754 * 13 12 11 15 15 C 1.46173 * 120.00112 * 185.27937 * 13 12 11 16 16 H 1.08002 * 119.99690 * 359.97438 * 15 13 12 17 17 C 1.40117 * 120.00248 * 180.02562 * 15 13 12 18 18 N 1.30644 * 119.99922 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 120.00181 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47178 * 89.99462 * 19 17 15 21 21 H 1.48497 * 109.47003 * 209.99662 * 19 17 15 22 22 H 1.48501 * 109.46891 * 329.99203 * 19 17 15 23 23 C 1.39030 * 119.83499 * 359.77244 * 11 10 9 24 24 C 1.38055 * 119.91405 * 359.97438 * 23 11 10 25 25 H 1.08999 * 109.47166 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47037 * 299.99806 * 1 2 3 27 27 H 1.08998 * 109.47167 * 59.99753 * 1 2 3 28 28 H 1.09000 * 109.47390 * 179.97438 * 7 5 3 29 29 H 1.08997 * 109.46752 * 299.99634 * 7 5 3 30 30 H 1.08996 * 109.47217 * 59.99151 * 7 5 3 31 31 H 1.08002 * 119.95562 * 359.97438 * 9 8 5 32 32 H 1.07994 * 120.04344 * 180.25159 * 10 9 8 33 33 H 0.97002 * 120.00442 * 33.37618 * 12 11 10 34 34 H 0.96997 * 119.99871 * 180.02562 * 18 17 15 35 35 H 1.08002 * 120.03666 * 179.97438 * 23 11 10 36 36 H 1.08002 * 119.95442 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9563 0.7805 -0.8893 7 6 4.1130 0.5814 1.2501 8 6 3.9937 2.7199 -0.0002 9 6 3.6093 3.5536 1.0347 10 6 4.0028 4.8769 1.0401 11 6 4.7780 5.3739 -0.0016 12 7 5.1740 6.7118 -0.0019 13 6 5.3000 7.3770 -1.1673 14 8 4.9767 6.8416 -2.2118 15 6 5.8249 8.7412 -1.1772 16 1 6.1113 9.2162 -0.2506 17 6 5.9554 9.4329 -2.3887 18 7 5.6085 8.8584 -3.5096 19 14 6.6269 11.1760 -2.4014 20 1 8.1037 11.1365 -2.5510 21 1 6.0341 11.9265 -3.5375 22 1 6.2763 11.8508 -1.1259 23 6 5.1579 4.5343 -1.0426 24 6 4.7649 3.2109 -1.0382 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 5.2015 0.6381 1.2503 29 1 3.7230 1.0757 2.1398 30 1 3.8039 -0.4638 1.2502 31 1 3.0033 3.1678 1.8413 32 1 3.7057 5.5260 1.8504 33 1 5.3586 7.1633 0.8366 34 1 5.6992 9.3371 -4.3483 35 1 5.7597 4.9170 -1.8536 36 1 5.0600 2.5580 -1.8464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424055785.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:27 Heat of formation + Delta-G solvation = -103.754130 kcal Electronic energy + Delta-G solvation = -20746.110097 eV Core-core repulsion = 17388.159544 eV Total energy + Delta-G solvation = -3357.950553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.65108 -39.14964 -37.33551 -36.28840 -34.42411 -32.78831 -32.25437 -30.31379 -28.46455 -27.73408 -26.21527 -24.47275 -22.46707 -21.88281 -20.39035 -19.51067 -17.67491 -17.34041 -16.74135 -16.50100 -16.17970 -15.49584 -15.10382 -14.50711 -14.03620 -13.64666 -13.64503 -13.49501 -12.99640 -12.87406 -12.59429 -12.42253 -12.39634 -12.08730 -11.71627 -11.52283 -11.29958 -11.08502 -10.96220 -10.82451 -10.64035 -10.53618 -10.33629 -10.21175 -9.24188 -8.86377 -8.33490 -7.73896 -7.02131 -6.34298 -4.81654 1.86465 2.07143 2.26797 2.78518 3.07514 3.14359 3.17863 3.99380 4.24885 4.54869 4.59956 4.70872 4.83861 4.98123 5.04733 5.09842 5.17607 5.39586 5.48522 5.54346 5.65041 5.69763 5.73079 5.98699 6.00248 6.28957 6.31759 6.42508 6.62160 6.89737 7.10814 7.15113 7.28507 7.44836 7.75339 7.80300 8.07480 8.19394 8.85325 9.22929 10.39367 10.57366 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.039745 B = 0.003445 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.315979 B = 8126.569464 C = 8302.061922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.490 6.490 5 C -0.028 4.028 6 H 0.111 0.889 7 C -0.139 4.139 8 C -0.137 4.137 9 C -0.063 4.063 10 C -0.179 4.179 11 C 0.201 3.799 12 N -0.700 5.700 13 C 0.542 3.458 14 O -0.558 6.558 15 C -0.539 4.539 16 H 0.072 0.928 17 C 0.086 3.914 18 N -0.759 5.759 19 Si 0.913 3.087 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.264 1.264 23 C -0.132 4.132 24 C -0.085 4.085 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.393 0.607 34 H 0.272 0.728 35 H 0.139 0.861 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.633 -15.227 8.773 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.300 3.700 4 O -0.375 6.375 5 C -0.047 4.047 6 H 0.129 0.871 7 C -0.196 4.196 8 C -0.138 4.138 9 C -0.082 4.082 10 C -0.201 4.201 11 C 0.102 3.898 12 N -0.343 5.343 13 C 0.349 3.651 14 O -0.440 6.440 15 C -0.575 4.575 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.387 5.387 19 Si 0.737 3.263 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.153 4.153 24 C -0.104 4.104 25 H 0.116 0.884 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.226 0.774 34 H 0.083 0.917 35 H 0.157 0.843 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.083 -15.169 7.761 17.522 hybrid contribution 0.004 1.232 0.340 1.278 sum -4.080 -13.937 8.101 16.629 Atomic orbital electron populations 1.23223 0.76813 1.03318 1.02563 1.86500 1.23068 1.33909 1.84558 1.23965 0.92223 0.81203 0.72590 1.90720 1.66853 1.36179 1.43715 1.19815 0.86679 0.95980 1.02269 0.87126 1.21789 1.02194 1.00045 0.95561 1.18939 1.04261 0.92942 0.97675 1.20418 0.97530 0.92986 0.97281 1.20808 1.01934 0.96242 1.01088 1.18024 0.92072 0.85362 0.94321 1.44193 1.70414 1.08415 1.11293 1.18392 0.78788 0.86947 0.80978 1.90644 1.52945 1.69618 1.30796 1.20861 1.44635 0.97682 0.94278 0.90996 1.25751 0.93439 0.99423 0.94909 1.69990 1.33722 1.36566 0.98447 0.86276 0.79430 0.81821 0.78731 1.19567 1.20304 1.18779 1.21261 1.02150 0.91886 1.00019 1.20760 0.97729 0.95316 0.96557 0.88351 0.92062 0.91962 0.90704 0.92070 0.91469 0.87303 0.86569 0.77371 0.91733 0.84328 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.25 10.47 -39.26 -0.41 -4.66 16 3 C 0.46 6.42 7.12 36.00 0.26 6.68 16 4 O -0.49 -8.63 14.83 -18.75 -0.28 -8.90 16 5 C -0.03 -0.35 3.00 -92.93 -0.28 -0.63 16 6 H 0.11 1.17 7.87 -51.92 -0.41 0.76 16 7 C -0.14 -1.33 8.94 37.16 0.33 -1.00 16 8 C -0.14 -2.19 4.41 -104.56 -0.46 -2.65 16 9 C -0.06 -1.06 7.91 -39.61 -0.31 -1.37 16 10 C -0.18 -3.28 9.97 -39.35 -0.39 -3.68 16 11 C 0.20 4.33 6.28 -83.77 -0.53 3.81 16 12 N -0.70 -16.03 5.32 -11.19 -0.06 -16.09 16 13 C 0.54 15.20 7.47 -13.07 -0.10 15.11 16 14 O -0.56 -17.62 12.70 5.15 0.07 -17.55 16 15 C -0.54 -14.80 9.54 -35.69 -0.34 -15.14 16 16 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 17 C 0.09 2.33 5.50 -17.35 -0.10 2.24 16 18 N -0.76 -22.18 11.82 55.55 0.66 -21.52 16 19 Si 0.91 19.60 29.56 -169.99 -5.02 14.57 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 23 C -0.13 -2.86 8.65 -39.35 -0.34 -3.20 16 24 C -0.08 -1.51 9.66 -39.62 -0.38 -1.89 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.59 7.40 -51.93 -0.38 0.21 16 30 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 31 H 0.11 1.62 7.51 -52.49 -0.39 1.22 16 32 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.39 7.67 8.79 -40.82 -0.36 7.31 16 34 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 35 H 0.14 3.40 6.41 -52.49 -0.34 3.06 16 36 H 0.12 1.74 7.94 -52.49 -0.42 1.32 16 LS Contribution 315.82 15.07 4.76 4.76 Total: -1.00 -34.92 315.82 -6.24 -41.16 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -4.38 Total: 8.59 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.57 Total: -0.35 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.60 Total: -37.62 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.62 Total: -31.11 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.92 -6.24 -41.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424055785.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.590 kcal (2) G-P(sol) polarization free energy of solvation -34.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds