Wall clock time and date at job start Mon Mar 30 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34226 * 116.99965 * 2 1 4 4 O 1.20833 * 120.00298 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00251 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.46850 * 59.99650 * 5 3 2 7 7 C 1.53001 * 109.47053 * 300.00005 * 5 3 2 8 8 C 1.50704 * 109.47386 * 180.02562 * 5 3 2 9 9 C 1.38346 * 119.95831 * 59.99612 * 8 5 3 10 10 C 1.38312 * 120.16482 * 179.70730 * 9 8 5 11 11 C 1.38078 * 120.08423 * 359.97438 * 10 9 8 12 12 C 1.39008 * 119.91661 * 0.02748 * 11 10 9 13 13 N 1.39533 * 120.08240 * 180.02562 * 12 11 10 14 14 C 1.34776 * 120.00106 * 33.39266 * 13 12 11 15 15 O 1.21737 * 119.99976 * 5.27516 * 14 13 12 16 16 C 1.46167 * 119.99852 * 185.27776 * 14 13 12 17 17 H 1.08008 * 119.99957 * 359.97438 * 16 14 13 18 18 C 1.40123 * 119.99889 * 180.02562 * 16 14 13 19 19 N 1.30629 * 120.00000 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99918 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47337 * 89.99788 * 20 18 16 22 22 H 1.48498 * 109.47065 * 209.99895 * 20 18 16 23 23 H 1.48504 * 109.47132 * 329.99554 * 20 18 16 24 24 C 1.38041 * 119.95195 * 239.72499 * 8 5 3 25 25 H 1.09007 * 109.47421 * 300.00306 * 1 2 3 26 26 H 1.09004 * 109.47640 * 59.99732 * 1 2 3 27 27 H 1.08996 * 109.47184 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47055 * 179.97438 * 7 5 3 29 29 H 1.09002 * 109.47230 * 300.00045 * 7 5 3 30 30 H 1.09002 * 109.47139 * 59.99276 * 7 5 3 31 31 H 1.08003 * 119.91975 * 359.72616 * 9 8 5 32 32 H 1.08004 * 119.95528 * 180.02562 * 10 9 8 33 33 H 1.08003 * 120.04226 * 180.02562 * 11 10 9 34 34 H 0.97001 * 119.99557 * 213.39354 * 13 12 11 35 35 H 0.97003 * 120.00336 * 180.02562 * 19 18 16 36 36 H 1.07991 * 120.04634 * 0.25235 * 24 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9556 0.7809 -0.8908 7 6 4.1138 0.5811 1.2483 8 6 3.9936 2.7201 0.0002 9 6 3.6151 3.5519 1.0389 10 6 4.0099 4.8774 1.0469 11 6 4.7842 5.3753 0.0178 12 6 5.1664 4.5426 -1.0276 13 7 5.9493 5.0419 -2.0691 14 6 6.8662 5.9988 -1.8240 15 8 7.0791 6.3593 -0.6809 16 6 7.6049 6.6038 -2.9307 17 1 7.4162 6.2837 -3.9449 18 6 8.5586 7.5983 -2.6758 19 7 8.7871 7.9851 -1.4492 20 14 9.5031 8.3710 -4.0901 21 1 8.7631 9.5574 -4.5899 22 1 10.8474 8.7890 -3.6176 23 1 9.6498 7.3807 -5.1870 24 6 4.7668 3.2107 -1.0328 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 5.2023 0.6378 1.2477 29 1 3.7244 1.0750 2.1386 30 1 3.8047 -0.4642 1.2483 31 1 3.0101 3.1652 1.8456 32 1 3.7129 5.5237 1.8597 33 1 5.0925 6.4103 0.0250 34 1 5.8336 4.7003 -2.9696 35 1 9.4470 8.6738 -1.2727 36 1 5.0621 2.5608 -1.8430 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424063707.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:31 Heat of formation + Delta-G solvation = -103.603440 kcal Electronic energy + Delta-G solvation = -20766.785066 eV Core-core repulsion = 17408.841048 eV Total energy + Delta-G solvation = -3357.944018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.71605 -39.16741 -37.32264 -36.34269 -34.33318 -33.06148 -32.42542 -29.70981 -28.65602 -27.80307 -26.18224 -24.74104 -22.31764 -21.95470 -20.71480 -19.13922 -17.71261 -17.37205 -16.78094 -16.52607 -15.92601 -15.54724 -15.23004 -14.75490 -14.03930 -13.88339 -13.73279 -13.44175 -13.04409 -12.69968 -12.65001 -12.54205 -12.20780 -12.06984 -11.64116 -11.49965 -11.34816 -11.07851 -11.02760 -10.87721 -10.64345 -10.55426 -10.33808 -10.29058 -9.25853 -8.87469 -8.29911 -7.74138 -7.02990 -6.34588 -4.81833 1.84793 2.05963 2.19547 2.73935 3.07333 3.14230 3.17536 3.98992 4.25361 4.48806 4.60283 4.62543 4.87194 4.92739 4.98882 5.06198 5.13379 5.34264 5.48247 5.61500 5.65538 5.69674 5.73417 5.98438 6.04815 6.19921 6.28120 6.40649 6.54288 6.95461 7.11610 7.17813 7.28306 7.44459 7.72971 7.75444 8.07573 8.19790 8.85216 9.23277 10.39278 10.57193 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.040668 B = 0.003457 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.330752 B = 8096.909414 C = 8294.967913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.462 3.538 4 O -0.491 6.491 5 C -0.034 4.034 6 H 0.113 0.887 7 C -0.140 4.140 8 C -0.068 4.068 9 C -0.131 4.131 10 C -0.102 4.102 11 C -0.121 4.121 12 C 0.191 3.809 13 N -0.701 5.701 14 C 0.543 3.457 15 O -0.560 6.560 16 C -0.539 4.539 17 H 0.072 0.928 18 C 0.086 3.914 19 N -0.760 5.760 20 Si 0.913 3.087 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.163 4.163 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.138 0.862 34 H 0.392 0.608 35 H 0.272 0.728 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.269 -14.446 1.864 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.303 3.697 4 O -0.376 6.376 5 C -0.053 4.053 6 H 0.131 0.869 7 C -0.197 4.197 8 C -0.069 4.069 9 C -0.150 4.150 10 C -0.121 4.121 11 C -0.142 4.142 12 C 0.093 3.907 13 N -0.344 5.344 14 C 0.350 3.650 15 O -0.441 6.441 16 C -0.575 4.575 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.388 5.388 20 Si 0.737 3.263 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.188 1.188 24 C -0.185 4.185 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.155 0.845 34 H 0.226 0.774 35 H 0.083 0.917 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.163 -13.672 2.761 17.865 hybrid contribution 0.168 0.268 -1.195 1.236 sum -10.995 -13.404 1.566 17.407 Atomic orbital electron populations 1.23229 0.76731 1.03395 1.02539 1.86503 1.23113 1.33793 1.84481 1.23854 0.92058 0.81232 0.72516 1.90707 1.66862 1.36164 1.43891 1.19897 0.86878 0.95892 1.02620 0.86947 1.21790 1.02439 1.00057 0.95404 1.18790 0.99811 0.92459 0.95830 1.20554 1.01914 0.94051 0.98495 1.20911 0.97841 0.95084 0.98278 1.21371 0.97137 1.01156 0.94547 1.17862 0.90925 0.91060 0.90883 1.44140 1.38681 1.42921 1.08658 1.18371 0.78305 0.77902 0.90424 1.90637 1.67437 1.62943 1.23111 1.20861 1.22175 1.21501 0.92969 0.91015 1.25743 0.95959 0.95556 0.96225 1.69982 1.26321 1.22543 1.19908 0.86282 0.78888 0.79742 0.81386 1.19582 1.20303 1.18777 1.20638 1.04226 0.93879 0.99763 0.92015 0.91981 0.88297 0.90524 0.91877 0.91307 0.87509 0.86611 0.84454 0.77434 0.91738 0.86549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.01 10.47 -39.25 -0.41 -4.42 16 3 C 0.46 6.13 7.12 36.01 0.26 6.38 16 4 O -0.49 -8.05 14.85 -18.76 -0.28 -8.33 16 5 C -0.03 -0.42 3.00 -92.92 -0.28 -0.70 16 6 H 0.11 1.17 7.87 -51.93 -0.41 0.76 16 7 C -0.14 -1.42 8.94 37.16 0.33 -1.08 16 8 C -0.07 -1.09 4.39 -104.65 -0.46 -1.55 16 9 C -0.13 -2.20 7.93 -39.51 -0.31 -2.52 16 10 C -0.10 -1.90 10.04 -39.61 -0.40 -2.30 16 11 C -0.12 -2.66 8.65 -39.35 -0.34 -3.00 16 12 C 0.19 4.09 6.28 -83.77 -0.53 3.56 16 13 N -0.70 -15.90 5.32 -11.20 -0.06 -15.96 16 14 C 0.54 15.09 7.47 -13.08 -0.10 14.99 16 15 O -0.56 -17.45 12.70 5.16 0.07 -17.38 16 16 C -0.54 -14.72 9.54 -35.69 -0.34 -15.06 16 17 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 18 C 0.09 2.33 5.50 -17.36 -0.10 2.23 16 19 N -0.76 -22.04 11.82 55.55 0.66 -21.38 16 20 Si 0.91 19.50 29.56 -169.99 -5.02 14.47 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 24 C -0.16 -2.89 9.59 -39.35 -0.38 -3.26 16 25 H 0.06 0.51 8.13 -51.92 -0.42 0.09 16 26 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.65 7.39 -51.93 -0.38 0.27 16 30 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 31 H 0.11 1.61 7.51 -52.48 -0.39 1.22 16 32 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 33 H 0.14 3.41 6.42 -52.48 -0.34 3.08 16 34 H 0.39 7.62 8.79 -40.82 -0.36 7.26 16 35 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 36 H 0.12 1.75 7.94 -52.49 -0.42 1.34 16 LS Contribution 315.84 15.07 4.76 4.76 Total: -1.00 -34.35 315.84 -6.24 -40.60 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.38 Total: 8.60 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.57 Total: -0.95 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.60 Total: -37.35 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.62 Total: -30.14 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.35 -6.24 -40.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424063707.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.007 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds