Wall clock time and date at job start Mon Mar 30 2020 01:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 116.99872 * 2 1 4 4 O 1.20832 * 119.99974 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00072 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.47805 * 300.00264 * 5 3 2 7 7 C 1.52998 * 109.46983 * 60.00401 * 5 3 2 8 8 C 1.50699 * 109.47410 * 180.02562 * 5 3 2 9 9 C 1.38356 * 119.95756 * 300.02948 * 8 5 3 10 10 C 1.38308 * 120.16633 * 179.97438 * 9 8 5 11 11 C 1.38080 * 120.08639 * 359.97438 * 10 9 8 12 12 C 1.39016 * 119.91378 * 359.72076 * 11 10 9 13 13 N 1.39525 * 120.08339 * 180.29766 * 12 11 10 14 14 C 1.34775 * 119.99747 * 145.12034 * 13 12 11 15 15 O 1.21742 * 120.00466 * 4.60712 * 14 13 12 16 16 C 1.46174 * 120.00112 * 184.60446 * 14 13 12 17 17 H 1.08003 * 120.00070 * 5.03377 * 16 14 13 18 18 C 1.40124 * 120.00351 * 185.03027 * 16 14 13 19 19 N 1.30636 * 119.99905 * 354.96936 * 18 16 14 20 20 Si 1.86800 * 119.99996 * 174.96707 * 18 16 14 21 21 H 1.48492 * 109.47364 * 95.00351 * 20 18 16 22 22 H 1.48505 * 109.46660 * 215.00175 * 20 18 16 23 23 H 1.48502 * 109.47329 * 334.99801 * 20 18 16 24 24 C 1.38040 * 119.96283 * 119.99794 * 8 5 3 25 25 H 1.08998 * 109.47113 * 299.99677 * 1 2 3 26 26 H 1.09000 * 109.47238 * 59.99522 * 1 2 3 27 27 H 1.08999 * 109.46719 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47110 * 60.00184 * 7 5 3 29 29 H 1.09003 * 109.47155 * 179.97438 * 7 5 3 30 30 H 1.08998 * 109.47424 * 299.99670 * 7 5 3 31 31 H 1.07999 * 119.91631 * 359.96910 * 9 8 5 32 32 H 1.08002 * 119.95866 * 180.02562 * 10 9 8 33 33 H 1.08001 * 120.04477 * 180.02562 * 11 10 9 34 34 H 0.97004 * 120.00561 * 325.12383 * 13 12 11 35 35 H 0.96999 * 120.00133 * 179.97438 * 19 18 16 36 36 H 1.08006 * 120.03782 * 359.97438 * 24 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9558 0.7811 0.8907 7 6 4.1138 0.5812 -1.2483 8 6 3.9936 2.7201 0.0011 9 6 3.6146 3.5530 -1.0367 10 6 4.0039 4.8801 -1.0403 11 6 4.7723 5.3789 -0.0071 12 6 5.1497 4.5467 1.0405 13 7 5.9209 5.0486 2.0894 14 6 5.7309 4.5929 3.3434 15 8 4.9465 3.6848 3.5489 16 6 6.4668 5.1889 4.4570 17 1 7.1007 6.0467 4.2878 18 6 6.3497 4.6473 5.7440 19 7 5.5090 3.6729 5.9687 20 14 7.3958 5.3185 7.1385 21 1 6.6256 6.3453 7.8851 22 1 7.7651 4.2116 8.0572 23 1 8.6284 5.9318 6.5818 24 6 4.7620 3.2114 1.0372 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.7244 1.0753 -2.1386 29 1 5.2023 0.6387 -1.2482 30 1 3.8048 -0.4640 -1.2483 31 1 3.0133 3.1658 -1.8459 32 1 3.7058 5.5274 -1.8518 33 1 5.0756 6.4155 -0.0104 34 1 6.5937 5.7255 1.9161 35 1 5.4282 3.2978 6.8595 36 1 5.0567 2.5609 1.8474 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424063708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:32 Heat of formation + Delta-G solvation = -103.073078 kcal Electronic energy + Delta-G solvation = -21087.425783 eV Core-core repulsion = 17729.504763 eV Total energy + Delta-G solvation = -3357.921020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53945 -39.13434 -37.22121 -36.20322 -34.36697 -33.01490 -32.32823 -29.67239 -28.65519 -27.65513 -26.18613 -24.60006 -22.31097 -21.96555 -20.32912 -19.37876 -17.52869 -17.25394 -16.69072 -16.37123 -15.85839 -15.50238 -15.26803 -14.59209 -14.18960 -13.73243 -13.68690 -13.29104 -12.99176 -12.68338 -12.53427 -12.36687 -12.12349 -11.95326 -11.65153 -11.47169 -11.32535 -11.13256 -10.91098 -10.71385 -10.62860 -10.54330 -10.34145 -10.11442 -9.22016 -8.86429 -8.28007 -7.70006 -7.06058 -6.34843 -4.81352 1.83424 2.12718 2.40460 2.89001 3.06809 3.14309 3.18066 3.99439 4.27455 4.52120 4.62336 4.75281 4.98507 5.09339 5.17024 5.20916 5.30016 5.48586 5.53609 5.65031 5.68727 5.72198 5.87590 5.94039 6.10316 6.25262 6.39000 6.49045 6.62170 6.97026 7.12303 7.15188 7.28614 7.44521 7.74825 7.92593 8.08103 8.20301 8.85538 9.23685 10.39185 10.57109 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.021162 B = 0.004563 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.825682 B = 6134.198664 C = 6968.230576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.465 3.535 4 O -0.492 6.492 5 C -0.037 4.037 6 H 0.117 0.883 7 C -0.137 4.137 8 C -0.068 4.068 9 C -0.131 4.131 10 C -0.105 4.105 11 C -0.169 4.169 12 C 0.187 3.813 13 N -0.701 5.701 14 C 0.544 3.456 15 O -0.560 6.560 16 C -0.540 4.540 17 H 0.072 0.928 18 C 0.087 3.913 19 N -0.760 5.760 20 Si 0.912 3.088 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.115 4.115 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.393 0.607 35 H 0.271 0.729 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.924 -4.924 -12.604 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.306 3.694 4 O -0.377 6.377 5 C -0.056 4.056 6 H 0.135 0.865 7 C -0.194 4.194 8 C -0.069 4.069 9 C -0.150 4.150 10 C -0.123 4.123 11 C -0.190 4.190 12 C 0.088 3.912 13 N -0.344 5.344 14 C 0.350 3.650 15 O -0.442 6.442 16 C -0.576 4.576 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.388 5.388 20 Si 0.736 3.264 21 H -0.197 1.197 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.136 4.136 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.226 0.774 35 H 0.082 0.918 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.782 -5.386 -12.196 13.858 hybrid contribution 0.453 0.879 0.724 1.226 sum -3.329 -4.507 -11.472 12.767 Atomic orbital electron populations 1.23217 0.76840 1.03306 1.02499 1.86499 1.23042 1.33789 1.84526 1.23773 0.91985 0.81215 0.72384 1.90694 1.66861 1.36180 1.43983 1.19908 0.87063 0.95915 1.02752 0.86494 1.21771 1.02214 1.00179 0.95274 1.19041 0.99472 0.92782 0.95572 1.20565 1.01741 0.93997 0.98691 1.20673 0.98374 0.95144 0.98137 1.20920 1.02681 0.98792 0.96653 1.17883 0.93218 0.91660 0.88394 1.44085 1.38889 1.44377 1.07071 1.18387 0.82974 0.83334 0.80277 1.90614 1.38863 1.31758 1.82992 1.20852 1.28969 1.16070 0.91667 0.90986 1.25736 0.94320 0.93875 0.99451 1.69992 1.27692 1.19146 1.21951 0.86283 0.80545 0.79102 0.80476 1.19687 1.20232 1.18694 1.21314 0.99887 0.94839 0.97515 0.91900 0.92155 0.88355 0.92078 0.90690 0.91270 0.87507 0.86772 0.86598 0.77362 0.91769 0.83894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.01 10.47 -39.27 -0.41 -5.42 16 3 C 0.46 7.58 7.12 36.00 0.26 7.84 16 4 O -0.49 -9.51 14.86 -18.75 -0.28 -9.78 16 5 C -0.04 -0.57 3.00 -92.93 -0.28 -0.85 16 6 H 0.12 1.78 7.87 -51.93 -0.41 1.37 16 7 C -0.14 -1.57 8.94 37.16 0.33 -1.24 16 8 C -0.07 -1.24 4.39 -104.65 -0.46 -1.70 16 9 C -0.13 -2.21 7.93 -39.51 -0.31 -2.52 16 10 C -0.10 -1.72 10.04 -39.61 -0.40 -2.11 16 11 C -0.17 -3.04 9.97 -39.35 -0.39 -3.43 16 12 C 0.19 4.00 6.29 -83.77 -0.53 3.47 16 13 N -0.70 -15.89 5.32 -11.20 -0.06 -15.95 16 14 C 0.54 15.13 7.58 -13.08 -0.10 15.03 16 15 O -0.56 -17.48 12.46 5.15 0.06 -17.41 16 16 C -0.54 -14.76 9.53 -35.69 -0.34 -15.10 16 17 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 18 C 0.09 2.36 5.50 -17.35 -0.10 2.26 16 19 N -0.76 -22.09 11.84 55.55 0.66 -21.43 16 20 Si 0.91 19.49 29.56 -169.99 -5.03 14.47 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 24 C -0.11 -2.47 8.31 -39.36 -0.33 -2.80 16 25 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.66 7.39 -51.93 -0.38 0.28 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 31 H 0.11 1.62 7.51 -52.49 -0.39 1.22 16 32 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.39 7.59 8.80 -40.82 -0.36 7.23 16 35 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 36 H 0.14 3.47 6.11 -52.48 -0.32 3.15 16 LS Contribution 315.60 15.07 4.76 4.76 Total: -1.00 -34.62 315.60 -6.24 -40.87 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -4.37 Total: 9.62 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.58 Total: 0.29 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.60 Total: -37.38 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.63 Total: -32.62 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.62 -6.24 -40.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424063708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.208 kcal (2) G-P(sol) polarization free energy of solvation -34.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds