Wall clock time and date at job start Mon Mar 30 2020 01:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 116.99872 * 2 1 4 4 O 1.20832 * 119.99974 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00072 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.47805 * 300.00264 * 5 3 2 7 7 C 1.52998 * 109.46983 * 60.00401 * 5 3 2 8 8 C 1.50699 * 109.47410 * 180.02562 * 5 3 2 9 9 C 1.38356 * 119.95756 * 300.02948 * 8 5 3 10 10 C 1.38308 * 120.16633 * 179.97438 * 9 8 5 11 11 C 1.38080 * 120.08639 * 359.97438 * 10 9 8 12 12 C 1.39016 * 119.91378 * 359.72076 * 11 10 9 13 13 N 1.39525 * 120.08339 * 180.29766 * 12 11 10 14 14 C 1.34775 * 119.99747 * 145.12034 * 13 12 11 15 15 O 1.21742 * 120.00466 * 4.60712 * 14 13 12 16 16 C 1.46174 * 120.00112 * 184.60446 * 14 13 12 17 17 H 1.08003 * 120.00070 * 5.03377 * 16 14 13 18 18 C 1.40124 * 120.00351 * 185.03027 * 16 14 13 19 19 N 1.30636 * 119.99905 * 354.96936 * 18 16 14 20 20 Si 1.86800 * 119.99996 * 174.96707 * 18 16 14 21 21 H 1.48492 * 109.47364 * 95.00351 * 20 18 16 22 22 H 1.48505 * 109.46660 * 215.00175 * 20 18 16 23 23 H 1.48502 * 109.47329 * 334.99801 * 20 18 16 24 24 C 1.38040 * 119.96283 * 119.99794 * 8 5 3 25 25 H 1.08998 * 109.47113 * 299.99677 * 1 2 3 26 26 H 1.09000 * 109.47238 * 59.99522 * 1 2 3 27 27 H 1.08999 * 109.46719 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47110 * 60.00184 * 7 5 3 29 29 H 1.09003 * 109.47155 * 179.97438 * 7 5 3 30 30 H 1.08998 * 109.47424 * 299.99670 * 7 5 3 31 31 H 1.07999 * 119.91631 * 359.96910 * 9 8 5 32 32 H 1.08002 * 119.95866 * 180.02562 * 10 9 8 33 33 H 1.08001 * 120.04477 * 180.02562 * 11 10 9 34 34 H 0.97004 * 120.00561 * 325.12383 * 13 12 11 35 35 H 0.96999 * 120.00133 * 179.97438 * 19 18 16 36 36 H 1.08006 * 120.03782 * 359.97438 * 24 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9558 0.7811 0.8907 7 6 4.1138 0.5812 -1.2483 8 6 3.9936 2.7201 0.0011 9 6 3.6146 3.5530 -1.0367 10 6 4.0039 4.8801 -1.0403 11 6 4.7723 5.3789 -0.0071 12 6 5.1497 4.5467 1.0405 13 7 5.9209 5.0486 2.0894 14 6 5.7309 4.5929 3.3434 15 8 4.9465 3.6848 3.5489 16 6 6.4668 5.1889 4.4570 17 1 7.1007 6.0467 4.2878 18 6 6.3497 4.6473 5.7440 19 7 5.5090 3.6729 5.9687 20 14 7.3958 5.3185 7.1385 21 1 6.6256 6.3453 7.8851 22 1 7.7651 4.2116 8.0572 23 1 8.6284 5.9318 6.5818 24 6 4.7620 3.2114 1.0372 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.7244 1.0753 -2.1386 29 1 5.2023 0.6387 -1.2482 30 1 3.8048 -0.4640 -1.2483 31 1 3.0133 3.1658 -1.8459 32 1 3.7058 5.5274 -1.8518 33 1 5.0756 6.4155 -0.0104 34 1 6.5937 5.7255 1.9161 35 1 5.4282 3.2978 6.8595 36 1 5.0567 2.5609 1.8474 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424063708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:32 Heat of formation + Delta-G solvation = -126.151368 kcal Electronic energy + Delta-G solvation = -21088.426533 eV Core-core repulsion = 17729.504763 eV Total energy + Delta-G solvation = -3358.921770 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.82329 -40.72268 -38.95538 -37.51703 -35.89528 -34.80682 -34.22627 -31.13231 -30.20362 -28.62713 -28.14913 -25.72355 -23.96593 -23.32050 -21.95543 -20.93404 -19.38594 -18.57252 -18.09158 -17.69711 -17.47697 -17.08550 -16.79415 -16.13919 -15.83059 -15.25482 -14.86761 -14.62594 -14.43930 -14.32800 -14.13384 -13.69076 -13.32218 -13.21728 -13.07011 -12.93332 -12.84778 -12.74410 -12.59977 -12.27865 -12.03686 -11.93979 -11.80978 -11.39427 -11.04257 -10.75668 -9.94140 -9.60589 -8.75593 -8.37829 -6.95142 0.40791 0.61815 1.12188 1.38934 1.40034 1.56710 1.74511 2.20669 2.37626 2.90255 3.00531 3.47422 3.56792 3.79220 4.08736 4.10547 4.26311 4.29721 4.31203 4.34833 4.49453 4.66865 4.72426 4.83346 4.86430 4.96898 5.12173 5.19501 5.24872 5.32913 5.54336 5.56164 5.69008 5.80637 5.96059 6.16604 6.43919 6.68335 6.77254 7.34930 8.35241 8.56187 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.021162 B = 0.004563 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.825682 B = 6134.198664 C = 6968.230576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.528 6.528 5 C -0.043 4.043 6 H 0.106 0.894 7 C -0.128 4.128 8 C -0.068 4.068 9 C -0.126 4.126 10 C -0.096 4.096 11 C -0.163 4.163 12 C 0.150 3.850 13 N -0.693 5.693 14 C 0.528 3.472 15 O -0.607 6.607 16 C -0.567 4.567 17 H 0.093 0.907 18 C 0.030 3.970 19 N -0.815 5.815 20 Si 1.002 2.998 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.246 1.246 24 C -0.145 4.145 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.137 0.863 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.142 0.858 34 H 0.407 0.593 35 H 0.277 0.723 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 -4.187 -14.244 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.312 3.688 4 O -0.417 6.417 5 C -0.062 4.062 6 H 0.124 0.876 7 C -0.185 4.185 8 C -0.069 4.069 9 C -0.145 4.145 10 C -0.114 4.114 11 C -0.184 4.184 12 C 0.053 3.947 13 N -0.338 5.338 14 C 0.335 3.665 15 O -0.493 6.493 16 C -0.603 4.603 17 H 0.111 0.889 18 C -0.186 4.186 19 N -0.444 5.444 20 Si 0.820 3.180 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.169 1.169 24 C -0.166 4.166 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.155 0.845 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.150 0.850 32 H 0.175 0.825 33 H 0.160 0.840 34 H 0.243 0.757 35 H 0.087 0.913 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.554 -4.646 -13.902 15.082 hybrid contribution 0.268 0.580 1.092 1.265 sum -3.286 -4.066 -12.810 13.835 Atomic orbital electron populations 1.23565 0.74859 1.05824 1.02340 1.86486 1.24936 1.32261 1.83798 1.23869 0.92167 0.81382 0.71383 1.90669 1.67630 1.37376 1.45979 1.19995 0.86997 0.94709 1.04470 0.87553 1.21766 1.02438 1.00908 0.93353 1.19272 0.98258 0.94562 0.94800 1.20933 1.00875 0.94206 0.98482 1.21184 0.96514 0.95406 0.98328 1.21196 1.02115 0.99564 0.95541 1.18213 0.94781 0.92296 0.89379 1.43630 1.39511 1.44424 1.06205 1.18770 0.82610 0.82998 0.82112 1.90579 1.40791 1.33649 1.84300 1.21409 1.29496 1.16996 0.92369 0.88876 1.27016 0.95331 0.93666 1.02575 1.70157 1.29973 1.21119 1.23139 0.84947 0.78671 0.78399 0.75951 1.18778 1.19616 1.16885 1.21122 1.02469 0.95044 0.97979 0.93080 0.91360 0.84523 0.90873 0.90113 0.89319 0.85021 0.82499 0.83989 0.75703 0.91272 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -9.55 10.47 -51.44 -0.54 -10.09 16 3 C 0.47 15.16 7.12 71.23 0.51 15.67 16 4 O -0.53 -20.36 14.86 21.95 0.33 -20.04 16 5 C -0.04 -1.32 3.00 -12.29 -0.04 -1.35 16 6 H 0.11 3.47 7.87 -2.39 -0.02 3.45 16 7 C -0.13 -2.71 8.94 71.98 0.64 -2.07 16 8 C -0.07 -2.52 4.39 -19.88 -0.09 -2.60 16 9 C -0.13 -4.02 7.93 22.31 0.18 -3.84 16 10 C -0.10 -2.87 10.04 22.25 0.22 -2.65 16 11 C -0.16 -5.64 9.97 22.42 0.22 -5.42 16 12 C 0.15 6.59 6.29 38.30 0.24 6.84 16 13 N -0.69 -32.58 5.32 -307.53 -1.63 -34.21 16 14 C 0.53 30.89 7.58 86.30 0.65 31.54 16 15 O -0.61 -40.51 12.46 -4.48 -0.06 -40.57 16 16 C -0.57 -31.78 9.53 24.79 0.24 -31.55 16 17 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 18 C 0.03 1.66 5.50 85.33 0.47 2.13 16 19 N -0.81 -49.39 11.84 21.85 0.26 -49.13 16 20 Si 1.00 40.17 29.56 68.60 2.03 42.20 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 22 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 23 H -0.25 -9.08 7.11 99.48 0.71 -8.38 16 24 C -0.15 -6.62 8.31 22.42 0.19 -6.43 16 25 H 0.05 1.15 8.13 -2.39 -0.02 1.13 16 26 H 0.07 1.27 8.13 -2.39 -0.02 1.25 16 27 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 1.38 7.39 -2.39 -0.02 1.37 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.55 8.11 -2.39 -0.02 1.53 16 31 H 0.13 3.56 7.51 -2.91 -0.02 3.54 16 32 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 34 H 0.41 16.01 8.80 -92.71 -0.82 15.19 16 35 H 0.28 15.17 8.29 -92.71 -0.77 14.40 16 36 H 0.10 5.42 6.11 -2.91 -0.02 5.41 16 Total: -1.00 -80.23 315.60 5.31 -74.92 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.29 Total: 34.92 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 4.63 Total: 2.01 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -1.38 Total: -83.35 kcal Atomic # 8 Polarization: -70.43 SS G_CDS: -0.27 Total: -70.70 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -80.23 5.31 -74.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424063708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.232 kcal (2) G-P(sol) polarization free energy of solvation -80.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds