Wall clock time and date at job start Mon Mar 30 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46503 * 109.47133 * 2 1 4 4 C 1.36946 * 119.99694 * 275.24418 * 3 2 1 5 5 H 1.08001 * 119.99729 * 146.57714 * 4 3 2 6 6 C 1.38809 * 119.99875 * 326.58174 * 4 3 2 7 7 N 1.31619 * 120.00027 * 336.12226 * 6 4 3 8 8 Si 1.86804 * 119.99882 * 156.12455 * 6 4 3 9 9 H 1.48500 * 109.46950 * 89.99669 * 8 6 4 10 10 H 1.48500 * 109.46936 * 209.99655 * 8 6 4 11 11 H 1.48493 * 109.47189 * 329.99932 * 8 6 4 12 12 S 1.65595 * 120.00271 * 95.24316 * 3 2 1 13 13 O 1.42100 * 104.27681 * 153.93104 * 12 3 2 14 14 O 1.42100 * 104.28005 * 26.07328 * 12 3 2 15 15 C 1.81400 * 104.44940 * 270.00154 * 12 3 2 16 16 C 1.52999 * 109.47044 * 180.02562 * 15 12 3 17 17 O 1.42899 * 109.46998 * 179.97438 * 16 15 12 18 18 C 1.42910 * 113.99890 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47114 * 180.02562 * 18 17 16 20 20 C 1.52998 * 117.50288 * 243.62422 * 19 18 17 21 21 C 1.52993 * 117.50185 * 175.00048 * 19 18 17 22 22 H 1.09006 * 109.47067 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47473 * 300.00418 * 1 2 3 24 24 H 1.09005 * 109.47301 * 60.00635 * 1 2 3 25 25 H 1.08995 * 109.47630 * 239.99723 * 2 1 3 26 26 H 1.09005 * 109.47301 * 119.99365 * 2 1 3 27 27 H 0.97006 * 119.99970 * 180.02562 * 7 6 4 28 28 H 1.08992 * 109.47166 * 59.99889 * 15 12 3 29 29 H 1.09001 * 109.47256 * 299.99983 * 15 12 3 30 30 H 1.09001 * 109.47183 * 59.99902 * 16 15 12 31 31 H 1.09001 * 109.46889 * 299.99974 * 16 15 12 32 32 H 1.08998 * 109.46920 * 59.99892 * 18 17 16 33 33 H 1.08997 * 109.46913 * 299.99820 * 18 17 16 34 34 H 1.09008 * 115.55108 * 29.32804 * 19 18 17 35 35 H 1.09009 * 117.49327 * 359.97438 * 20 19 18 36 36 H 1.08995 * 117.50284 * 145.01626 * 20 19 18 37 37 H 1.09001 * 117.50472 * 214.98286 * 21 19 18 38 38 H 1.09008 * 117.49466 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1443 2.0629 -1.1811 5 1 1.9692 3.1282 -1.2110 6 6 2.4968 1.3846 -2.3397 7 7 3.1519 0.2456 -2.2620 8 14 2.0415 2.0882 -4.0091 9 1 3.1352 2.9705 -4.4893 10 1 1.8400 0.9789 -4.9756 11 1 0.7876 2.8745 -3.8896 12 16 2.4178 2.1182 1.4281 13 8 3.3743 3.1022 1.0590 14 8 2.7669 1.0446 2.2910 15 6 0.8778 2.9028 1.9789 16 6 1.1200 3.6261 3.3052 17 8 -0.0930 4.2446 3.7389 18 6 0.0244 4.9505 4.9759 19 6 -1.3269 5.5681 5.3409 20 6 -1.4116 7.0943 5.4067 21 6 -1.4400 6.2703 6.6955 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.3987 -0.2282 -3.0716 28 1 0.1104 2.1408 2.1150 29 1 0.5474 3.6212 1.2288 30 1 1.8873 4.3881 3.1687 31 1 1.4506 2.9079 4.0556 32 1 0.7695 5.7396 4.8745 33 1 0.3316 4.2595 5.7608 34 1 -2.2030 5.0303 4.9782 35 1 -0.5043 7.6584 5.1903 36 1 -2.3433 7.5610 5.0871 37 1 -2.3904 6.1949 7.2239 38 1 -0.5516 6.2919 7.3268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424208225.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:12 Heat of formation + Delta-G solvation = -87.239174 kcal Electronic energy + Delta-G solvation = -20061.566317 eV Core-core repulsion = 16839.775858 eV Total energy + Delta-G solvation = -3221.790459 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -38.58364 -36.76280 -36.08393 -35.84171 -34.82087 -31.70610 -31.47796 -29.20851 -27.01137 -24.58499 -23.25712 -22.63970 -21.47686 -20.83913 -18.40618 -17.55989 -16.85739 -16.28972 -16.25215 -15.57002 -15.38244 -14.79209 -14.64377 -14.30576 -13.65952 -13.52425 -13.35791 -12.78375 -12.31481 -12.01518 -11.85890 -11.71760 -11.65149 -11.26422 -11.22917 -11.06283 -10.97875 -10.90828 -10.81201 -10.72153 -10.43161 -10.38585 -10.16767 -10.08270 -9.74195 -9.59388 -9.02233 -7.68441 -6.22205 -3.90380 1.19915 3.22712 3.29748 3.31956 3.33913 3.65582 3.95526 4.38014 4.55185 4.63471 4.70804 4.83121 4.89898 4.99292 5.08941 5.11195 5.27924 5.32113 5.32403 5.36208 5.46210 5.61300 5.82738 5.85330 5.93620 6.04566 6.13311 6.26015 6.38248 6.61671 6.93227 7.12129 7.31226 7.45132 7.82863 8.45228 9.04595 9.41479 10.79857 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025979 B = 0.004233 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.519364 B = 6613.638528 C = 6920.496763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 N -0.842 5.842 4 C -0.288 4.288 5 H 0.091 0.909 6 C 0.038 3.962 7 N -0.858 5.858 8 Si 0.914 3.086 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.270 1.270 12 S 2.563 3.437 13 O -0.963 6.963 14 O -0.990 6.990 15 C -0.637 4.637 16 C 0.079 3.921 17 O -0.377 6.377 18 C 0.086 3.914 19 C -0.152 4.152 20 C -0.178 4.178 21 C -0.175 4.175 22 H 0.048 0.952 23 H 0.035 0.965 24 H 0.060 0.940 25 H 0.116 0.884 26 H 0.060 0.940 27 H 0.266 0.734 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.658 6.768 11.050 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.020 4.020 3 N -0.674 5.674 4 C -0.423 4.423 5 H 0.109 0.891 6 C -0.169 4.169 7 N -0.497 5.497 8 Si 0.740 3.260 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.195 1.195 12 S 2.660 3.340 13 O -0.952 6.952 14 O -0.979 6.979 15 C -0.760 4.760 16 C 0.001 3.999 17 O -0.296 6.296 18 C 0.009 3.991 19 C -0.171 4.171 20 C -0.215 4.215 21 C -0.212 4.212 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.079 0.921 25 H 0.133 0.867 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.923 6.665 11.394 15.395 hybrid contribution -0.738 0.480 -0.770 1.169 sum -8.661 7.145 10.624 15.457 Atomic orbital electron populations 1.22241 0.98885 1.00178 1.01097 1.21376 0.91364 0.84262 1.04950 1.52583 1.77038 1.20537 1.17285 1.19052 1.45079 0.93953 0.84184 0.89136 1.25290 0.95128 0.96871 0.99607 1.69984 1.33872 1.16807 1.29065 0.86163 0.79236 0.78603 0.82006 1.20335 1.20849 1.19473 1.07203 0.75934 0.75163 0.75693 1.93474 1.55997 1.63960 1.81809 1.93440 1.81694 1.52832 1.69972 1.31053 1.27198 1.12790 1.04998 1.22063 0.87654 0.96122 0.94069 1.87940 1.32942 1.69962 1.38768 1.22060 0.95498 0.95074 0.86427 1.22137 0.99038 0.94970 1.00911 1.23079 1.03569 0.93470 1.01343 1.22974 1.03422 1.04212 0.90584 0.93279 0.94632 0.92120 0.86654 0.92118 0.92341 0.85172 0.84719 0.92111 0.92203 0.92956 0.92693 0.86774 0.88593 0.88584 0.88420 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.21 37.15 0.38 -2.67 16 2 C 0.11 2.43 5.98 -4.05 -0.02 2.40 16 3 N -0.84 -20.41 2.78 -59.91 -0.17 -20.58 16 4 C -0.29 -7.44 8.78 -15.06 -0.13 -7.57 16 5 H 0.09 2.26 7.94 -52.49 -0.42 1.84 16 6 C 0.04 0.98 4.98 -17.43 -0.09 0.90 16 7 N -0.86 -23.16 11.28 55.49 0.63 -22.53 16 8 Si 0.91 19.95 29.62 -169.99 -5.03 14.92 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 12 S 2.56 57.13 5.39 -107.50 -0.58 56.55 16 13 O -0.96 -24.48 17.22 -57.54 -0.99 -25.47 16 14 O -0.99 -23.67 16.53 -57.54 -0.95 -24.62 16 15 C -0.64 -11.09 6.55 37.16 0.24 -10.85 16 16 C 0.08 1.24 5.95 37.16 0.22 1.47 16 17 O -0.38 -5.77 10.34 -35.23 -0.36 -6.13 16 18 C 0.09 1.02 6.22 37.16 0.23 1.25 16 19 C -0.15 -1.57 6.06 -90.63 -0.55 -2.12 16 20 C -0.18 -1.56 10.18 -26.73 -0.27 -1.83 16 21 C -0.17 -1.40 10.25 -26.74 -0.27 -1.67 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.03 0.59 6.98 -51.93 -0.36 0.23 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.12 2.86 5.31 -51.93 -0.28 2.58 16 26 H 0.06 1.35 6.81 -51.93 -0.35 0.99 16 27 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.13 2.10 6.98 -51.93 -0.36 1.73 16 29 H 0.13 2.27 8.14 -51.92 -0.42 1.84 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.57 7.88 -51.93 -0.41 0.16 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.11 1.23 8.14 -51.92 -0.42 0.80 16 35 H 0.10 0.81 8.03 -51.92 -0.42 0.39 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -31.59 329.27 -8.72 -40.31 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.96 Total: 3.28 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -0.26 Total: -20.69 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.46 Total: -43.11 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -2.31 Total: -56.22 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Atomic # 16 Polarization: 57.13 SS G_CDS: -0.58 Total: 56.55 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.59 -8.72 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424208225.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.928 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds