Wall clock time and date at job start Mon Mar 30 2020 01:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46503 * 109.47133 * 2 1 4 4 C 1.36946 * 119.99694 * 275.24418 * 3 2 1 5 5 H 1.08001 * 119.99729 * 146.57714 * 4 3 2 6 6 C 1.38809 * 119.99875 * 326.58174 * 4 3 2 7 7 N 1.31619 * 120.00027 * 336.12226 * 6 4 3 8 8 Si 1.86804 * 119.99882 * 156.12455 * 6 4 3 9 9 H 1.48500 * 109.46950 * 89.99669 * 8 6 4 10 10 H 1.48500 * 109.46936 * 209.99655 * 8 6 4 11 11 H 1.48493 * 109.47189 * 329.99932 * 8 6 4 12 12 S 1.65595 * 120.00271 * 95.24316 * 3 2 1 13 13 O 1.42100 * 104.27681 * 153.93104 * 12 3 2 14 14 O 1.42100 * 104.28005 * 26.07328 * 12 3 2 15 15 C 1.81400 * 104.44940 * 270.00154 * 12 3 2 16 16 C 1.52999 * 109.47044 * 180.02562 * 15 12 3 17 17 O 1.42899 * 109.46998 * 179.97438 * 16 15 12 18 18 C 1.42910 * 113.99890 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47114 * 180.02562 * 18 17 16 20 20 C 1.52998 * 117.50288 * 243.62422 * 19 18 17 21 21 C 1.52993 * 117.50185 * 175.00048 * 19 18 17 22 22 H 1.09006 * 109.47067 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47473 * 300.00418 * 1 2 3 24 24 H 1.09005 * 109.47301 * 60.00635 * 1 2 3 25 25 H 1.08995 * 109.47630 * 239.99723 * 2 1 3 26 26 H 1.09005 * 109.47301 * 119.99365 * 2 1 3 27 27 H 0.97006 * 119.99970 * 180.02562 * 7 6 4 28 28 H 1.08992 * 109.47166 * 59.99889 * 15 12 3 29 29 H 1.09001 * 109.47256 * 299.99983 * 15 12 3 30 30 H 1.09001 * 109.47183 * 59.99902 * 16 15 12 31 31 H 1.09001 * 109.46889 * 299.99974 * 16 15 12 32 32 H 1.08998 * 109.46920 * 59.99892 * 18 17 16 33 33 H 1.08997 * 109.46913 * 299.99820 * 18 17 16 34 34 H 1.09008 * 115.55108 * 29.32804 * 19 18 17 35 35 H 1.09009 * 117.49327 * 359.97438 * 20 19 18 36 36 H 1.08995 * 117.50284 * 145.01626 * 20 19 18 37 37 H 1.09001 * 117.50472 * 214.98286 * 21 19 18 38 38 H 1.09008 * 117.49466 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1443 2.0629 -1.1811 5 1 1.9692 3.1282 -1.2110 6 6 2.4968 1.3846 -2.3397 7 7 3.1519 0.2456 -2.2620 8 14 2.0415 2.0882 -4.0091 9 1 3.1352 2.9705 -4.4893 10 1 1.8400 0.9789 -4.9756 11 1 0.7876 2.8745 -3.8896 12 16 2.4178 2.1182 1.4281 13 8 3.3743 3.1022 1.0590 14 8 2.7669 1.0446 2.2910 15 6 0.8778 2.9028 1.9789 16 6 1.1200 3.6261 3.3052 17 8 -0.0930 4.2446 3.7389 18 6 0.0244 4.9505 4.9759 19 6 -1.3269 5.5681 5.3409 20 6 -1.4116 7.0943 5.4067 21 6 -1.4400 6.2703 6.6955 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.3987 -0.2282 -3.0716 28 1 0.1104 2.1408 2.1150 29 1 0.5474 3.6212 1.2288 30 1 1.8873 4.3881 3.1687 31 1 1.4506 2.9079 4.0556 32 1 0.7695 5.7396 4.8745 33 1 0.3316 4.2595 5.7608 34 1 -2.2030 5.0303 4.9782 35 1 -0.5043 7.6584 5.1903 36 1 -2.3433 7.5610 5.0871 37 1 -2.3904 6.1949 7.2239 38 1 -0.5516 6.2919 7.3268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424208225.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:11 Heat of formation + Delta-G solvation = -108.663830 kcal Electronic energy + Delta-G solvation = -20062.495360 eV Core-core repulsion = 16839.775858 eV Total energy + Delta-G solvation = -3222.719502 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.55151 -37.95530 -37.67866 -37.62286 -36.71379 -33.54764 -32.84570 -30.91920 -27.94427 -26.47527 -24.60317 -23.26980 -23.13667 -21.64036 -20.24232 -19.17135 -18.35060 -17.92858 -17.47183 -16.99391 -16.60652 -16.40054 -16.28274 -15.41409 -15.26517 -14.68708 -14.51997 -14.39725 -14.06151 -13.67142 -13.13312 -13.04267 -12.89908 -12.85504 -12.81481 -12.60633 -12.57880 -12.39485 -12.20365 -12.10039 -11.94079 -11.78476 -11.50378 -11.34191 -11.26105 -10.87336 -10.56675 -9.57329 -8.14141 -5.88773 -0.53294 1.50157 1.51837 1.63033 2.05380 2.42402 2.60457 2.89638 2.99612 3.26802 3.38094 3.55725 3.81426 3.89613 3.94309 4.06845 4.13140 4.29107 4.38445 4.45826 4.49453 4.64348 4.67229 4.76484 4.76712 4.77142 4.99765 5.02443 5.19797 5.23103 5.32376 5.52811 5.65569 5.99073 6.04980 6.52985 7.13031 7.48016 8.88041 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025979 B = 0.004233 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.519364 B = 6613.638528 C = 6920.496763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.100 3.900 3 N -0.858 5.858 4 C -0.311 4.311 5 H 0.093 0.907 6 C -0.007 4.007 7 N -0.895 5.895 8 Si 0.975 3.025 9 H -0.281 1.281 10 H -0.280 1.280 11 H -0.257 1.257 12 S 2.572 3.428 13 O -1.002 7.002 14 O -1.012 7.012 15 C -0.608 4.608 16 C 0.071 3.929 17 O -0.391 6.391 18 C 0.077 3.923 19 C -0.173 4.173 20 C -0.180 4.180 21 C -0.158 4.158 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.267 0.733 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.539 7.929 12.101 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.027 4.027 3 N -0.690 5.690 4 C -0.445 4.445 5 H 0.111 0.889 6 C -0.211 4.211 7 N -0.536 5.536 8 Si 0.798 3.202 9 H -0.207 1.207 10 H -0.205 1.205 11 H -0.181 1.181 12 S 2.673 3.327 13 O -0.992 6.992 14 O -1.002 7.002 15 C -0.738 4.738 16 C -0.007 4.007 17 O -0.310 6.310 18 C 0.001 3.999 19 C -0.192 4.192 20 C -0.216 4.216 21 C -0.195 4.195 22 H 0.092 0.908 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.169 0.831 29 H 0.164 0.836 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.772 7.799 12.408 17.615 hybrid contribution -0.195 0.169 -0.916 0.951 sum -9.967 7.968 11.492 17.173 Atomic orbital electron populations 1.22139 0.95581 1.02067 1.01735 1.21405 0.94147 0.83597 1.03530 1.52674 1.77726 1.21069 1.17534 1.19297 1.45656 0.94229 0.85288 0.88933 1.26096 0.94907 0.97222 1.02832 1.70099 1.35290 1.18331 1.29862 0.85234 0.79146 0.77928 0.77842 1.20712 1.20522 1.18057 1.06306 0.77055 0.74483 0.74831 1.93431 1.58961 1.64392 1.82401 1.93414 1.83090 1.53903 1.69754 1.30620 1.23313 1.13368 1.06470 1.22109 0.88378 0.96808 0.93375 1.87897 1.32321 1.70358 1.40466 1.22328 0.96823 0.95405 0.85317 1.22122 0.97908 0.95869 1.03274 1.23178 1.04085 0.92478 1.01905 1.23085 1.04567 1.01991 0.89881 0.90824 0.92619 0.92750 0.89102 0.92551 0.92359 0.83149 0.83617 0.91418 0.90898 0.92120 0.91563 0.87586 0.88393 0.87877 0.87102 0.87666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.52 10.21 71.98 0.73 -4.79 16 2 C 0.10 4.52 5.98 86.38 0.52 5.04 16 3 N -0.86 -41.72 2.78 -343.46 -0.95 -42.68 16 4 C -0.31 -16.20 8.78 84.03 0.74 -15.47 16 5 H 0.09 4.64 7.94 -2.91 -0.02 4.61 16 6 C -0.01 -0.38 4.98 84.86 0.42 0.04 16 7 N -0.90 -49.55 11.28 21.65 0.24 -49.30 16 8 Si 0.97 41.04 29.62 68.60 2.03 43.07 16 9 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 12 S 2.57 113.83 5.39 -56.49 -0.30 113.53 16 13 O -1.00 -51.41 17.22 -127.65 -2.20 -53.61 16 14 O -1.01 -48.27 16.53 -127.65 -2.11 -50.38 16 15 C -0.61 -19.86 6.55 71.98 0.47 -19.39 16 16 C 0.07 2.10 5.95 71.98 0.43 2.52 16 17 O -0.39 -11.03 10.34 -148.98 -1.54 -12.57 16 18 C 0.08 1.66 6.22 71.98 0.45 2.11 16 19 C -0.17 -3.21 6.06 -10.80 -0.07 -3.28 16 20 C -0.18 -2.73 10.18 30.59 0.31 -2.42 16 21 C -0.16 -2.09 10.25 30.59 0.31 -1.78 16 22 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 23 H 0.05 1.71 6.98 -2.38 -0.02 1.69 16 24 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.09 4.62 5.31 -2.39 -0.01 4.61 16 26 H 0.06 2.53 6.81 -2.38 -0.02 2.51 16 27 H 0.27 13.89 8.31 -92.70 -0.77 13.12 16 28 H 0.15 4.37 6.98 -2.39 -0.02 4.35 16 29 H 0.15 4.55 8.14 -2.39 -0.02 4.53 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 1.18 7.88 -2.39 -0.02 1.17 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.10 1.44 8.03 -2.38 -0.02 1.42 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -68.28 329.27 0.52 -67.76 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 1.03 Total: 21.57 kcal Atomic # 6 Polarization: -41.71 SS G_CDS: 4.32 Total: -37.39 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -0.71 Total: -91.98 kcal Atomic # 8 Polarization: -110.71 SS G_CDS: -5.85 Total: -116.56 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: 113.83 SS G_CDS: -0.30 Total: 113.53 kcal Total: -68.28 0.52 -67.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424208225.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.907 kcal (2) G-P(sol) polarization free energy of solvation -68.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds