Wall clock time and date at job start Mon Mar 30 2020 01:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46956 * 2 1 4 4 C 1.50699 * 109.47066 * 120.00494 * 2 1 3 5 5 H 1.07991 * 120.00235 * 114.48773 * 4 2 1 6 6 C 1.37880 * 119.99738 * 294.48199 * 4 2 1 7 7 N 1.31508 * 119.99989 * 164.60405 * 6 4 2 8 8 Si 1.86805 * 119.99961 * 344.87406 * 6 4 2 9 9 H 1.48492 * 109.47185 * 269.72622 * 8 6 4 10 10 H 1.48497 * 109.46961 * 29.72788 * 8 6 4 11 11 H 1.48499 * 109.46895 * 149.72669 * 8 6 4 12 12 N 1.46505 * 109.46886 * 240.00460 * 2 1 3 13 13 S 1.65592 * 119.99980 * 94.99809 * 12 2 1 14 14 O 1.42099 * 104.27795 * 181.06816 * 13 12 2 15 15 O 1.42095 * 104.27925 * 308.92799 * 13 12 2 16 16 C 1.81403 * 104.45148 * 65.00019 * 13 12 2 17 17 C 1.52998 * 109.47303 * 179.97438 * 16 13 12 18 18 O 1.42901 * 109.47161 * 179.97438 * 17 16 13 19 19 C 1.42903 * 114.00237 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.46933 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.49474 * 243.62017 * 20 19 18 22 22 C 1.53003 * 117.49422 * 174.99820 * 20 19 18 23 23 H 1.09005 * 109.47075 * 173.50032 * 1 2 3 24 24 H 1.09000 * 109.46901 * 293.49794 * 1 2 3 25 25 H 1.08997 * 109.47288 * 53.49846 * 1 2 3 26 26 H 0.97007 * 120.00077 * 355.18390 * 7 6 4 27 27 H 0.97006 * 119.99601 * 274.99681 * 12 2 1 28 28 H 1.09001 * 109.47038 * 300.00044 * 16 13 12 29 29 H 1.09002 * 109.47317 * 59.99122 * 16 13 12 30 30 H 1.08999 * 109.46812 * 299.99678 * 17 16 13 31 31 H 1.08999 * 109.47014 * 59.99879 * 17 16 13 32 32 H 1.08993 * 109.46833 * 300.00088 * 19 18 17 33 33 H 1.09004 * 109.46707 * 60.00150 * 19 18 17 34 34 H 1.08994 * 115.55103 * 29.33345 * 20 19 18 35 35 H 1.08994 * 117.50572 * 0.02562 * 21 20 19 36 36 H 1.09006 * 117.49299 * 145.03018 * 21 20 19 37 37 H 1.08991 * 117.49929 * 214.97984 * 22 20 19 38 38 H 1.08999 * 117.49648 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5778 -1.6375 1.1338 6 6 1.7956 -0.1769 2.4795 7 7 1.9547 -0.9199 3.5529 8 14 1.2415 1.5992 2.6467 9 1 2.4310 2.4787 2.7761 10 1 0.4649 1.9908 1.4432 11 1 0.3882 1.7400 3.8539 12 7 2.0184 -0.6905 -1.1963 13 16 2.4121 0.1773 -2.5505 14 8 2.8122 -0.8073 -3.4937 15 8 1.2751 0.9967 -2.7845 16 6 3.8313 1.1874 -2.0441 17 6 4.2941 2.0446 -3.2239 18 8 5.4117 2.8407 -2.8248 19 6 5.9245 3.6828 -3.8592 20 6 7.1115 4.4849 -3.3222 21 6 6.9675 6.0071 -3.2652 22 6 7.8769 5.3634 -4.3139 23 1 -0.3633 -1.0211 -0.1163 24 1 -0.3633 0.4098 0.9425 25 1 -0.3634 0.6113 -0.8260 26 1 2.1704 -1.8614 3.4634 27 1 2.1110 -1.6562 -1.1950 28 1 3.5400 1.8343 -1.2166 29 1 4.6459 0.5363 -1.7268 30 1 4.5855 1.3973 -4.0510 31 1 3.4796 2.6956 -3.5415 32 1 6.2503 3.0691 -4.6990 33 1 5.1438 4.3675 -4.1907 34 1 7.6847 4.0032 -2.5301 35 1 6.0271 6.4370 -3.6098 36 1 7.4460 6.5271 -2.4352 37 1 8.9535 5.4600 -4.1739 38 1 7.5345 5.3701 -5.3487 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425152698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:17 Heat of formation + Delta-G solvation = -100.923333 kcal Electronic energy + Delta-G solvation = -19790.072967 eV Core-core repulsion = 16567.689118 eV Total energy + Delta-G solvation = -3222.383849 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.70394 -36.86727 -36.81493 -35.76121 -35.55668 -32.33646 -31.83651 -29.04164 -27.14336 -24.78234 -23.44965 -22.68055 -20.94262 -20.80847 -18.95940 -18.09663 -17.40348 -16.72640 -16.50544 -15.79956 -15.60973 -15.56506 -14.63618 -14.50803 -13.74857 -13.65130 -13.41772 -13.08977 -12.48316 -12.23331 -12.02175 -11.91943 -11.82288 -11.77842 -11.67468 -11.57097 -11.37606 -11.15592 -10.85432 -10.63106 -10.51773 -10.49589 -10.21766 -9.73101 -9.67263 -9.23389 -8.58895 -8.46646 -6.59301 -4.25690 0.57468 3.09232 3.31334 3.33800 3.37534 3.49698 3.61000 4.09859 4.38066 4.46818 4.49663 4.58235 4.62489 4.84817 4.86228 5.00652 5.04060 5.11537 5.20155 5.31292 5.34779 5.51882 5.57992 5.78953 5.79703 5.91905 5.95285 6.31234 6.59970 6.67493 6.96774 7.08114 7.25094 7.59045 7.94735 8.23632 8.74454 9.43832 10.78869 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.004771 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.936277 B = 5866.885177 C = 6918.017887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.250 3.750 3 H 0.030 0.970 4 C -0.613 4.613 5 H 0.066 0.934 6 C 0.038 3.962 7 N -0.898 5.898 8 Si 1.029 2.971 9 H -0.282 1.282 10 H -0.265 1.265 11 H -0.281 1.281 12 N -1.092 6.092 13 S 2.614 3.386 14 O -0.974 6.974 15 O -0.957 6.957 16 C -0.640 4.640 17 C 0.079 3.921 18 O -0.374 6.374 19 C 0.087 3.913 20 C -0.154 4.154 21 C -0.177 4.177 22 C -0.174 4.174 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.271 0.729 27 H 0.413 0.587 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.452 9.955 -14.042 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.144 3.856 3 H 0.048 0.952 4 C -0.652 4.652 5 H 0.084 0.916 6 C -0.169 4.169 7 N -0.531 5.531 8 Si 0.856 3.144 9 H -0.209 1.209 10 H -0.190 1.190 11 H -0.206 1.206 12 N -0.853 5.853 13 S 2.704 3.296 14 O -0.964 6.964 15 O -0.947 6.947 16 C -0.766 4.766 17 C 0.001 3.999 18 O -0.293 6.293 19 C 0.010 3.990 20 C -0.172 4.172 21 C -0.214 4.214 22 C -0.211 4.211 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.248 0.752 28 H 0.161 0.839 29 H 0.160 0.840 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.727 11.292 -13.564 18.887 hybrid contribution 0.926 -1.444 -0.615 1.823 sum 7.653 9.848 -14.179 18.884 Atomic orbital electron populations 1.22579 0.98417 1.00863 1.00439 1.18867 0.91187 0.92001 0.83504 0.95239 1.22163 1.40873 1.11503 0.90692 0.91612 1.25702 0.94016 1.05376 0.91779 1.70802 1.43093 1.08422 1.30747 0.84326 0.77686 0.75532 0.76870 1.20882 1.18998 1.20606 1.55366 1.80597 1.18696 1.30609 1.04678 0.76037 0.75072 0.73817 1.93553 1.84681 1.57484 1.60668 1.93587 1.45422 1.71356 1.84360 1.30905 1.22072 1.14567 1.09092 1.22012 0.89847 0.93405 0.94661 1.87966 1.47569 1.56699 1.37047 1.22080 0.94356 0.92470 0.90068 1.22138 0.99527 0.92558 1.02989 1.23086 1.01739 0.94963 1.01617 1.22976 0.98458 1.03802 0.95886 0.93181 0.92408 0.94017 0.91905 0.75213 0.83924 0.84028 0.91929 0.91832 0.92602 0.92860 0.86668 0.88585 0.88503 0.88368 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 8.79 37.16 0.33 -3.23 16 2 C 0.25 5.58 2.21 -69.08 -0.15 5.43 16 3 H 0.03 0.64 5.78 -51.93 -0.30 0.34 16 4 C -0.61 -15.94 9.04 -34.44 -0.31 -16.25 16 5 H 0.07 1.81 8.05 -52.49 -0.42 1.39 16 6 C 0.04 1.04 5.33 -17.82 -0.09 0.94 16 7 N -0.90 -26.21 13.70 55.43 0.76 -25.45 16 8 Si 1.03 23.54 26.17 -169.99 -4.45 19.10 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.26 -5.53 5.53 56.52 0.31 -5.22 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -1.09 -20.88 5.35 -5.88 -0.03 -20.91 16 13 S 2.61 44.46 5.38 -107.50 -0.58 43.88 16 14 O -0.97 -17.94 18.08 -57.54 -1.04 -18.98 16 15 O -0.96 -18.49 17.24 -57.54 -0.99 -19.48 16 16 C -0.64 -9.41 6.33 37.16 0.24 -9.18 16 17 C 0.08 1.04 5.95 37.16 0.22 1.26 16 18 O -0.37 -5.17 10.34 -35.23 -0.36 -5.54 16 19 C 0.09 0.92 6.22 37.16 0.23 1.15 16 20 C -0.15 -1.49 6.06 -90.62 -0.55 -2.04 16 21 C -0.18 -1.47 10.18 -26.73 -0.27 -1.74 16 22 C -0.17 -1.29 10.25 -26.73 -0.27 -1.56 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.06 1.26 5.06 -51.93 -0.26 0.99 16 25 H 0.04 0.85 7.56 -51.93 -0.39 0.46 16 26 H 0.27 7.86 8.73 -40.82 -0.36 7.50 16 27 H 0.41 7.47 8.79 -34.47 -0.30 7.16 16 28 H 0.14 2.12 7.44 -51.92 -0.39 1.73 16 29 H 0.14 1.96 8.14 -51.92 -0.42 1.53 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.50 7.87 -51.93 -0.41 0.09 16 34 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.10 0.75 8.03 -51.93 -0.42 0.33 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -32.06 326.95 -8.35 -40.41 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -5.94 Total: 7.25 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -0.64 Total: -25.21 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.73 Total: -46.36 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -2.40 Total: -44.00 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -4.45 Total: 19.10 kcal Atomic # 16 Polarization: 44.46 SS G_CDS: -0.58 Total: 43.88 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.06 -8.35 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425152698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.513 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds