Wall clock time and date at job start Mon Mar 30 2020 01:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46956 * 2 1 4 4 C 1.50699 * 109.47066 * 120.00494 * 2 1 3 5 5 H 1.07991 * 120.00235 * 114.48773 * 4 2 1 6 6 C 1.37880 * 119.99738 * 294.48199 * 4 2 1 7 7 N 1.31508 * 119.99989 * 164.60405 * 6 4 2 8 8 Si 1.86805 * 119.99961 * 344.87406 * 6 4 2 9 9 H 1.48492 * 109.47185 * 269.72622 * 8 6 4 10 10 H 1.48497 * 109.46961 * 29.72788 * 8 6 4 11 11 H 1.48499 * 109.46895 * 149.72669 * 8 6 4 12 12 N 1.46505 * 109.46886 * 240.00460 * 2 1 3 13 13 S 1.65592 * 119.99980 * 94.99809 * 12 2 1 14 14 O 1.42099 * 104.27795 * 181.06816 * 13 12 2 15 15 O 1.42095 * 104.27925 * 308.92799 * 13 12 2 16 16 C 1.81403 * 104.45148 * 65.00019 * 13 12 2 17 17 C 1.52998 * 109.47303 * 179.97438 * 16 13 12 18 18 O 1.42901 * 109.47161 * 179.97438 * 17 16 13 19 19 C 1.42903 * 114.00237 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.46933 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.49474 * 243.62017 * 20 19 18 22 22 C 1.53003 * 117.49422 * 174.99820 * 20 19 18 23 23 H 1.09005 * 109.47075 * 173.50032 * 1 2 3 24 24 H 1.09000 * 109.46901 * 293.49794 * 1 2 3 25 25 H 1.08997 * 109.47288 * 53.49846 * 1 2 3 26 26 H 0.97007 * 120.00077 * 355.18390 * 7 6 4 27 27 H 0.97006 * 119.99601 * 274.99681 * 12 2 1 28 28 H 1.09001 * 109.47038 * 300.00044 * 16 13 12 29 29 H 1.09002 * 109.47317 * 59.99122 * 16 13 12 30 30 H 1.08999 * 109.46812 * 299.99678 * 17 16 13 31 31 H 1.08999 * 109.47014 * 59.99879 * 17 16 13 32 32 H 1.08993 * 109.46833 * 300.00088 * 19 18 17 33 33 H 1.09004 * 109.46707 * 60.00150 * 19 18 17 34 34 H 1.08994 * 115.55103 * 29.33345 * 20 19 18 35 35 H 1.08994 * 117.50572 * 0.02562 * 21 20 19 36 36 H 1.09006 * 117.49299 * 145.03018 * 21 20 19 37 37 H 1.08991 * 117.49929 * 214.97984 * 22 20 19 38 38 H 1.08999 * 117.49648 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5778 -1.6375 1.1338 6 6 1.7956 -0.1769 2.4795 7 7 1.9547 -0.9199 3.5529 8 14 1.2415 1.5992 2.6467 9 1 2.4310 2.4787 2.7761 10 1 0.4649 1.9908 1.4432 11 1 0.3882 1.7400 3.8539 12 7 2.0184 -0.6905 -1.1963 13 16 2.4121 0.1773 -2.5505 14 8 2.8122 -0.8073 -3.4937 15 8 1.2751 0.9967 -2.7845 16 6 3.8313 1.1874 -2.0441 17 6 4.2941 2.0446 -3.2239 18 8 5.4117 2.8407 -2.8248 19 6 5.9245 3.6828 -3.8592 20 6 7.1115 4.4849 -3.3222 21 6 6.9675 6.0071 -3.2652 22 6 7.8769 5.3634 -4.3139 23 1 -0.3633 -1.0211 -0.1163 24 1 -0.3633 0.4098 0.9425 25 1 -0.3634 0.6113 -0.8260 26 1 2.1704 -1.8614 3.4634 27 1 2.1110 -1.6562 -1.1950 28 1 3.5400 1.8343 -1.2166 29 1 4.6459 0.5363 -1.7268 30 1 4.5855 1.3973 -4.0510 31 1 3.4796 2.6956 -3.5415 32 1 6.2503 3.0691 -4.6990 33 1 5.1438 4.3675 -4.1907 34 1 7.6847 4.0032 -2.5301 35 1 6.0271 6.4370 -3.6098 36 1 7.4460 6.5271 -2.4352 37 1 8.9535 5.4600 -4.1739 38 1 7.5345 5.3701 -5.3487 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425152698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:17 Heat of formation + Delta-G solvation = -125.251170 kcal Electronic energy + Delta-G solvation = -19791.127902 eV Core-core repulsion = 16567.689118 eV Total energy + Delta-G solvation = -3223.438783 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.54611 -38.28553 -37.62471 -37.43517 -37.05060 -34.32280 -32.91413 -30.75671 -27.94807 -26.75063 -24.51406 -23.26136 -22.61287 -21.66268 -20.45922 -19.79360 -18.74292 -18.00290 -17.59720 -17.01982 -16.95098 -16.48168 -16.12443 -15.39067 -15.21625 -14.90109 -14.70035 -14.46999 -14.31042 -13.94188 -13.40717 -13.28146 -13.14556 -12.95805 -12.90720 -12.76335 -12.39559 -12.35713 -12.24658 -12.03215 -11.94237 -11.40637 -11.36057 -11.26000 -11.11778 -10.55204 -10.51472 -10.27898 -8.73071 -6.39627 -0.78837 1.52904 1.55183 1.69940 1.77051 2.36163 2.50661 2.78288 2.98044 3.05946 3.20064 3.48573 3.72924 3.89381 3.94620 4.07257 4.13924 4.23488 4.30471 4.41931 4.45051 4.56835 4.65787 4.73469 4.76875 4.82023 4.96337 5.00155 5.20292 5.23279 5.33936 5.51876 5.81989 6.04908 6.07857 6.22675 6.61124 7.37881 8.64189 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.004771 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.936277 B = 5866.885177 C = 6918.017887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.248 3.752 3 H 0.047 0.953 4 C -0.608 4.608 5 H 0.037 0.963 6 C -0.011 4.011 7 N -0.934 5.934 8 Si 1.060 2.940 9 H -0.268 1.268 10 H -0.231 1.231 11 H -0.284 1.284 12 N -1.100 6.100 13 S 2.633 3.367 14 O -0.987 6.987 15 O -0.978 6.978 16 C -0.629 4.629 17 C 0.069 3.931 18 O -0.396 6.396 19 C 0.080 3.920 20 C -0.176 4.176 21 C -0.180 4.180 22 C -0.158 4.158 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.256 0.744 27 H 0.415 0.585 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.730 12.035 -15.770 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.141 3.859 3 H 0.065 0.935 4 C -0.647 4.647 5 H 0.055 0.945 6 C -0.211 4.211 7 N -0.569 5.569 8 Si 0.880 3.120 9 H -0.194 1.194 10 H -0.155 1.155 11 H -0.210 1.210 12 N -0.859 5.859 13 S 2.726 3.274 14 O -0.978 6.978 15 O -0.968 6.968 16 C -0.758 4.758 17 C -0.009 4.009 18 O -0.316 6.316 19 C 0.004 3.996 20 C -0.194 4.194 21 C -0.217 4.217 22 C -0.195 4.195 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.250 0.750 28 H 0.163 0.837 29 H 0.168 0.832 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.989 13.343 -15.329 21.491 hybrid contribution 0.935 -2.133 -0.153 2.334 sum 7.924 11.210 -15.483 20.692 Atomic orbital electron populations 1.22581 0.97813 1.01249 1.00952 1.18740 0.91675 0.92482 0.82990 0.93539 1.22348 1.39530 1.10409 0.92460 0.94498 1.27000 0.93785 1.08557 0.91729 1.70928 1.46118 1.07921 1.31957 0.83980 0.78325 0.71571 0.78105 1.19374 1.15451 1.21026 1.55317 1.81305 1.19127 1.30114 1.04053 0.76050 0.74523 0.72769 1.93536 1.84950 1.58450 1.60837 1.93554 1.47304 1.71471 1.84493 1.30714 1.20657 1.14512 1.09962 1.22169 0.90589 0.93980 0.94168 1.87924 1.47700 1.57282 1.38676 1.22314 0.94918 0.92604 0.89801 1.22144 0.99997 0.93238 1.04068 1.23178 1.02380 0.93919 1.02238 1.23078 0.98863 1.01446 0.96071 0.93289 0.92555 0.92541 0.93464 0.75025 0.83682 0.83191 0.90233 0.90320 0.91320 0.91682 0.88047 0.88087 0.88241 0.87400 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.92 8.79 71.98 0.63 -6.28 16 2 C 0.25 10.67 2.21 44.25 0.10 10.77 16 3 H 0.05 1.87 5.78 -2.39 -0.01 1.86 16 4 C -0.61 -31.67 9.04 25.60 0.23 -31.44 16 5 H 0.04 2.08 8.05 -2.92 -0.02 2.06 16 6 C -0.01 -0.58 5.33 84.66 0.45 -0.13 16 7 N -0.93 -55.69 13.70 21.45 0.29 -55.39 16 8 Si 1.06 45.96 26.17 68.60 1.80 47.76 16 9 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.23 -8.72 5.53 99.48 0.55 -8.17 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 N -1.10 -40.76 5.35 -172.51 -0.92 -41.69 16 13 S 2.63 84.60 5.38 -56.49 -0.30 84.30 16 14 O -0.99 -34.78 18.08 -127.65 -2.31 -37.09 16 15 O -0.98 -35.55 17.24 -127.65 -2.20 -37.75 16 16 C -0.63 -17.07 6.33 71.98 0.46 -16.61 16 17 C 0.07 1.64 5.95 71.98 0.43 2.07 16 18 O -0.40 -10.15 10.34 -148.98 -1.54 -11.69 16 19 C 0.08 1.51 6.22 71.98 0.45 1.96 16 20 C -0.18 -3.12 6.06 -10.79 -0.07 -3.18 16 21 C -0.18 -2.63 10.18 30.60 0.31 -2.32 16 22 C -0.16 -1.95 10.25 30.60 0.31 -1.64 16 23 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 24 H 0.06 2.32 5.06 -2.39 -0.01 2.31 16 25 H 0.06 2.16 7.56 -2.39 -0.02 2.15 16 26 H 0.26 15.47 8.73 -92.70 -0.81 14.66 16 27 H 0.42 14.86 8.79 -96.74 -0.85 14.01 16 28 H 0.14 3.94 7.44 -2.39 -0.02 3.92 16 29 H 0.15 3.85 8.14 -2.39 -0.02 3.83 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.06 7.87 -2.38 -0.02 1.04 16 34 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.10 1.35 8.03 -2.39 -0.02 1.33 16 36 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -67.83 326.95 -1.88 -69.70 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.01 Total: 28.65 kcal Atomic # 6 Polarization: -50.11 SS G_CDS: 3.30 Total: -46.80 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -0.63 Total: -97.08 kcal Atomic # 8 Polarization: -80.48 SS G_CDS: -6.05 Total: -86.53 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.80 Total: 47.76 kcal Atomic # 16 Polarization: 84.60 SS G_CDS: -0.30 Total: 84.30 kcal Total: -67.83 -1.88 -69.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425152698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.550 kcal (2) G-P(sol) polarization free energy of solvation -67.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds