Wall clock time and date at job start Mon Mar 30 2020 01:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21343 * 119.99866 * 2 1 4 4 C 1.46399 * 119.99964 * 180.02562 * 2 1 3 5 5 C 1.37978 * 125.93820 * 179.97438 * 4 2 1 6 6 C 1.39955 * 106.72926 * 180.02562 * 5 4 2 7 7 C 1.36593 * 107.03129 * 359.97438 * 6 5 4 8 8 C 1.47416 * 125.65503 * 180.02562 * 7 6 5 9 9 O 1.21592 * 120.00255 * 5.73474 * 8 7 6 10 10 N 1.34781 * 119.99677 * 186.01269 * 8 7 6 11 11 C 1.46503 * 119.99847 * 174.53123 * 10 8 7 12 12 C 1.52999 * 109.46978 * 183.64643 * 11 10 8 13 13 C 1.50703 * 115.54877 * 65.41461 * 12 11 10 14 14 H 1.07997 * 119.99790 * 265.59545 * 13 12 11 15 15 C 1.37881 * 119.99993 * 85.59466 * 13 12 11 16 16 N 1.31515 * 120.00055 * 355.36603 * 15 13 12 17 17 Si 1.86797 * 119.99705 * 175.36353 * 15 13 12 18 18 H 1.48501 * 109.47521 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46983 * 120.00192 * 17 15 13 20 20 H 1.48494 * 109.47031 * 239.99835 * 17 15 13 21 21 C 1.53001 * 117.50253 * 279.74405 * 12 11 10 22 22 C 1.52994 * 117.49890 * 211.08234 * 12 11 10 23 23 O 1.34454 * 108.68479 * 0.26546 * 7 6 5 24 24 H 1.08994 * 109.47305 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47209 * 299.99449 * 1 2 3 26 26 H 1.08998 * 109.47392 * 59.99320 * 1 2 3 27 27 H 1.08007 * 126.63500 * 0.02562 * 5 4 2 28 28 H 1.07996 * 126.48425 * 180.02562 * 6 5 4 29 29 H 0.96997 * 120.00268 * 354.52767 * 10 8 7 30 30 H 1.08999 * 109.47212 * 303.64724 * 11 10 8 31 31 H 1.08996 * 109.47036 * 63.64964 * 11 10 8 32 32 H 0.96992 * 120.00068 * 185.03386 * 16 15 13 33 33 H 1.09004 * 117.49528 * 359.97438 * 21 12 11 34 34 H 1.08994 * 117.49994 * 145.02155 * 21 12 11 35 35 H 1.08996 * 117.50246 * 214.98272 * 22 12 11 36 36 H 1.09001 * 117.49815 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0509 0.0000 4 6 2.2390 -1.2679 -0.0006 5 6 3.6113 -1.4106 -0.0011 6 6 3.8734 -2.7854 -0.0021 7 6 2.6653 -3.4229 -0.0016 8 6 2.4644 -4.8833 -0.0017 9 8 3.4196 -5.6285 0.1028 10 7 1.2225 -5.3927 -0.1234 11 6 1.0331 -6.8404 -0.2441 12 6 -0.4509 -7.1444 -0.4590 13 6 -1.0372 -6.6393 -1.7522 14 1 -1.5360 -5.6819 -1.7813 15 6 -0.9368 -7.3996 -2.8980 16 7 -0.2513 -8.5219 -2.8846 17 14 -1.7745 -6.8355 -4.4695 18 1 -2.4762 -5.5503 -4.2226 19 1 -0.7555 -6.6463 -5.5331 20 1 -2.7571 -7.8613 -4.9023 21 6 -1.3571 -7.1478 0.7738 22 6 -0.9879 -8.4672 0.0911 23 8 1.6899 -2.4975 -0.0062 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 4.3420 -0.6152 -0.0008 28 1 4.8465 -3.2536 -0.0024 29 1 0.4541 -4.8007 -0.1310 30 1 1.6068 -7.2123 -1.0930 31 1 1.3757 -7.3289 0.6680 32 1 -0.1191 -9.0193 -3.7067 33 1 -0.8959 -6.9339 1.7380 34 1 -2.3774 -6.7852 0.6494 35 1 -1.7655 -8.9720 -0.4820 36 1 -0.2838 -9.1211 0.6057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431152781.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:05 Heat of formation + Delta-G solvation = -37.445897 kcal Electronic energy + Delta-G solvation = -20863.556606 eV Core-core repulsion = 17508.481394 eV Total energy + Delta-G solvation = -3355.075212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.80082 -39.43203 -38.99530 -36.80873 -33.78019 -33.09128 -32.04363 -31.39671 -29.50259 -26.71205 -25.44398 -23.80874 -21.94785 -21.29878 -20.57649 -19.95759 -19.54630 -18.10730 -16.84814 -16.66446 -16.20269 -15.36737 -15.08884 -15.03816 -14.76877 -14.38162 -14.14980 -13.59440 -13.54314 -13.21241 -13.00052 -12.76849 -12.49132 -12.43163 -11.96814 -11.66940 -11.06431 -10.99636 -10.59465 -10.43300 -10.33987 -10.22669 -10.04354 -9.62445 -9.11214 -8.90651 -8.57605 -8.45053 -8.23692 -6.15134 -4.24437 0.34345 1.69144 2.35691 2.58349 3.20646 3.30104 3.30917 3.32089 3.50566 3.84350 4.29787 4.66834 4.73112 4.93569 5.13219 5.17317 5.20818 5.25471 5.33879 5.48519 5.62903 5.79177 5.91511 6.08278 6.22846 6.34857 6.40175 6.53118 6.60304 6.69134 7.00625 7.01575 7.12068 7.30449 7.39823 7.74674 7.97027 8.24614 8.45541 8.77262 9.43392 10.92800 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.004849 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.937146 B = 5772.754508 C = 6413.366395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.443 3.557 3 O -0.445 6.445 4 C -0.096 4.096 5 C -0.127 4.127 6 C -0.154 4.154 7 C -0.011 4.011 8 C 0.585 3.415 9 O -0.525 6.525 10 N -0.683 5.683 11 C 0.160 3.840 12 C 0.023 3.977 13 C -0.501 4.501 14 H 0.061 0.939 15 C 0.074 3.926 16 N -0.875 5.875 17 Si 0.890 3.110 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.210 4.210 22 C -0.144 4.144 23 O -0.139 6.139 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.165 0.835 28 H 0.168 0.832 29 H 0.406 0.594 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.052 11.996 5.922 13.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.321 3.679 3 O -0.320 6.320 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.175 4.175 7 C -0.066 4.066 8 C 0.368 3.632 9 O -0.405 6.405 10 N -0.331 5.331 11 C 0.037 3.963 12 C 0.022 3.978 13 C -0.538 4.538 14 H 0.079 0.921 15 C -0.130 4.130 16 N -0.510 5.510 17 Si 0.717 3.283 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.248 4.248 22 C -0.182 4.182 23 O -0.034 6.034 24 H 0.109 0.891 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.183 0.817 28 H 0.185 0.815 29 H 0.241 0.759 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.684 11.713 5.860 13.369 hybrid contribution -0.566 0.353 -1.015 1.215 sum 2.118 12.066 4.845 13.174 Atomic orbital electron populations 1.22217 0.92051 1.05944 1.05256 1.21250 0.91649 0.84180 0.70848 1.90626 1.72297 1.31650 1.37459 1.23227 0.93250 0.85394 1.12913 1.22423 0.94580 0.97123 1.00496 1.21928 0.98953 0.92745 1.03843 1.23008 0.87087 0.90184 1.06312 1.16767 0.84618 0.83014 0.78794 1.90843 1.41022 1.57004 1.51582 1.45976 1.06687 1.10759 1.69629 1.21189 0.98523 0.76676 0.99875 1.19041 0.88491 0.98100 0.92125 1.20380 1.37254 1.04342 0.91834 0.92061 1.24988 0.94843 0.94370 0.98824 1.69973 1.38885 1.14750 1.27433 0.86577 0.79557 0.78789 0.83349 1.19664 1.20987 1.20880 1.23048 1.00874 1.04434 0.96424 1.22488 1.02958 0.90278 1.02454 1.84085 1.35812 1.14087 1.69368 0.89067 0.88208 0.88123 0.81731 0.81459 0.75893 0.90247 0.93837 0.92804 0.91555 0.90202 0.89644 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.60 10.32 36.00 0.37 -1.22 16 2 C 0.44 4.97 7.23 -31.03 -0.22 4.74 16 3 O -0.44 -5.95 17.62 5.50 0.10 -5.85 16 4 C -0.10 -1.21 7.09 -36.39 -0.26 -1.47 16 5 C -0.13 -1.53 10.66 -39.03 -0.42 -1.95 16 6 C -0.15 -2.07 10.58 -39.53 -0.42 -2.49 16 7 C -0.01 -0.16 7.13 -36.44 -0.26 -0.42 16 8 C 0.58 10.72 7.80 -12.52 -0.10 10.62 16 9 O -0.53 -11.04 16.87 5.28 0.09 -10.95 16 10 N -0.68 -12.76 5.46 -61.39 -0.34 -13.09 16 11 C 0.16 3.42 5.51 -4.04 -0.02 3.40 16 12 C 0.02 0.52 1.38 -155.66 -0.21 0.30 16 13 C -0.50 -12.41 8.71 -34.44 -0.30 -12.71 16 14 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 15 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 16 N -0.87 -23.55 12.85 55.43 0.71 -22.84 16 17 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.21 -4.14 9.96 -26.69 -0.27 -4.40 16 22 C -0.14 -3.13 9.35 -26.70 -0.25 -3.38 16 23 O -0.14 -1.93 9.84 4.29 0.04 -1.89 16 24 H 0.09 0.74 7.52 -51.93 -0.39 0.35 16 25 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.17 1.63 8.06 -52.48 -0.42 1.21 16 28 H 0.17 2.02 8.06 -52.49 -0.42 1.60 16 29 H 0.41 7.00 8.21 -40.82 -0.34 6.67 16 30 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 31 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 32 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.09 2.00 8.14 -51.93 -0.42 1.57 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -28.81 327.68 -6.43 -35.24 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -4.50 Total: 6.56 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.45 Total: -7.17 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.38 Total: -35.93 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.23 Total: -18.69 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.81 -6.43 -35.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431152781.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.209 kcal (2) G-P(sol) polarization free energy of solvation -28.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds