Wall clock time and date at job start Mon Mar 30 2020 01:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21343 * 119.99866 * 2 1 4 4 C 1.46399 * 119.99964 * 180.02562 * 2 1 3 5 5 C 1.37978 * 125.93820 * 179.97438 * 4 2 1 6 6 C 1.39955 * 106.72926 * 180.02562 * 5 4 2 7 7 C 1.36593 * 107.03129 * 359.97438 * 6 5 4 8 8 C 1.47416 * 125.65503 * 180.02562 * 7 6 5 9 9 O 1.21592 * 120.00255 * 5.73474 * 8 7 6 10 10 N 1.34781 * 119.99677 * 186.01269 * 8 7 6 11 11 C 1.46503 * 119.99847 * 174.53123 * 10 8 7 12 12 C 1.52999 * 109.46978 * 183.64643 * 11 10 8 13 13 C 1.50703 * 115.54877 * 65.41461 * 12 11 10 14 14 H 1.07997 * 119.99790 * 265.59545 * 13 12 11 15 15 C 1.37881 * 119.99993 * 85.59466 * 13 12 11 16 16 N 1.31515 * 120.00055 * 355.36603 * 15 13 12 17 17 Si 1.86797 * 119.99705 * 175.36353 * 15 13 12 18 18 H 1.48501 * 109.47521 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46983 * 120.00192 * 17 15 13 20 20 H 1.48494 * 109.47031 * 239.99835 * 17 15 13 21 21 C 1.53001 * 117.50253 * 279.74405 * 12 11 10 22 22 C 1.52994 * 117.49890 * 211.08234 * 12 11 10 23 23 O 1.34454 * 108.68479 * 0.26546 * 7 6 5 24 24 H 1.08994 * 109.47305 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47209 * 299.99449 * 1 2 3 26 26 H 1.08998 * 109.47392 * 59.99320 * 1 2 3 27 27 H 1.08007 * 126.63500 * 0.02562 * 5 4 2 28 28 H 1.07996 * 126.48425 * 180.02562 * 6 5 4 29 29 H 0.96997 * 120.00268 * 354.52767 * 10 8 7 30 30 H 1.08999 * 109.47212 * 303.64724 * 11 10 8 31 31 H 1.08996 * 109.47036 * 63.64964 * 11 10 8 32 32 H 0.96992 * 120.00068 * 185.03386 * 16 15 13 33 33 H 1.09004 * 117.49528 * 359.97438 * 21 12 11 34 34 H 1.08994 * 117.49994 * 145.02155 * 21 12 11 35 35 H 1.08996 * 117.50246 * 214.98272 * 22 12 11 36 36 H 1.09001 * 117.49815 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0509 0.0000 4 6 2.2390 -1.2679 -0.0006 5 6 3.6113 -1.4106 -0.0011 6 6 3.8734 -2.7854 -0.0021 7 6 2.6653 -3.4229 -0.0016 8 6 2.4644 -4.8833 -0.0017 9 8 3.4196 -5.6285 0.1028 10 7 1.2225 -5.3927 -0.1234 11 6 1.0331 -6.8404 -0.2441 12 6 -0.4509 -7.1444 -0.4590 13 6 -1.0372 -6.6393 -1.7522 14 1 -1.5360 -5.6819 -1.7813 15 6 -0.9368 -7.3996 -2.8980 16 7 -0.2513 -8.5219 -2.8846 17 14 -1.7745 -6.8355 -4.4695 18 1 -2.4762 -5.5503 -4.2226 19 1 -0.7555 -6.6463 -5.5331 20 1 -2.7571 -7.8613 -4.9023 21 6 -1.3571 -7.1478 0.7738 22 6 -0.9879 -8.4672 0.0911 23 8 1.6899 -2.4975 -0.0062 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 4.3420 -0.6152 -0.0008 28 1 4.8465 -3.2536 -0.0024 29 1 0.4541 -4.8007 -0.1310 30 1 1.6068 -7.2123 -1.0930 31 1 1.3757 -7.3289 0.6680 32 1 -0.1191 -9.0193 -3.7067 33 1 -0.8959 -6.9339 1.7380 34 1 -2.3774 -6.7852 0.6494 35 1 -1.7655 -8.9720 -0.4820 36 1 -0.2838 -9.1211 0.6057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431152781.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:05 Heat of formation + Delta-G solvation = -54.887959 kcal Electronic energy + Delta-G solvation = -20864.312950 eV Core-core repulsion = 17508.481394 eV Total energy + Delta-G solvation = -3355.831557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.87263 -40.68114 -40.20377 -38.50585 -35.25991 -34.24807 -33.96232 -32.33397 -30.47835 -28.28372 -27.27236 -25.00123 -23.06326 -22.89549 -21.85390 -21.28180 -21.01636 -19.47574 -18.12399 -17.76801 -17.75143 -16.84581 -16.66200 -16.20203 -16.04125 -15.77824 -15.54672 -15.12422 -14.54100 -14.51219 -14.21130 -14.19992 -13.74245 -13.46452 -13.15749 -13.09547 -12.91979 -12.85796 -12.35043 -12.03473 -11.70244 -11.39012 -11.25989 -11.20938 -10.90471 -10.45875 -10.23767 -10.02807 -9.80567 -8.10320 -6.23187 -0.71014 0.60599 1.23887 1.40808 1.45348 1.53632 1.63672 1.94382 2.17176 2.42638 2.88399 3.18444 3.46518 3.64309 3.71467 4.02627 4.22870 4.33452 4.37026 4.53056 4.53786 4.61865 4.64458 4.69322 4.71953 4.94919 5.02724 5.08225 5.13605 5.28936 5.35835 5.51250 5.59175 5.67138 5.77991 6.21147 6.36145 6.50503 6.84203 7.00873 7.46779 8.97377 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.004849 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.937146 B = 5772.754508 C = 6413.366395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.448 3.552 3 O -0.466 6.466 4 C -0.092 4.092 5 C -0.128 4.128 6 C -0.140 4.140 7 C -0.040 4.040 8 C 0.589 3.411 9 O -0.559 6.559 10 N -0.681 5.681 11 C 0.175 3.825 12 C -0.001 4.001 13 C -0.502 4.502 14 H 0.063 0.937 15 C 0.026 3.974 16 N -0.907 5.907 17 Si 0.945 3.055 18 H -0.261 1.261 19 H -0.289 1.289 20 H -0.285 1.285 21 C -0.176 4.176 22 C -0.155 4.155 23 O -0.139 6.139 24 H 0.091 0.909 25 H 0.120 0.880 26 H 0.116 0.884 27 H 0.188 0.812 28 H 0.178 0.822 29 H 0.414 0.586 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.259 0.741 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.337 14.219 6.543 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.327 3.673 3 O -0.343 6.343 4 C -0.145 4.145 5 C -0.147 4.147 6 C -0.160 4.160 7 C -0.094 4.094 8 C 0.374 3.626 9 O -0.441 6.441 10 N -0.329 5.329 11 C 0.052 3.948 12 C -0.001 4.001 13 C -0.540 4.540 14 H 0.081 0.919 15 C -0.174 4.174 16 N -0.544 5.544 17 Si 0.772 3.228 18 H -0.185 1.185 19 H -0.215 1.215 20 H -0.211 1.211 21 C -0.213 4.213 22 C -0.193 4.193 23 O -0.034 6.034 24 H 0.110 0.890 25 H 0.138 0.862 26 H 0.134 0.866 27 H 0.206 0.794 28 H 0.196 0.804 29 H 0.250 0.750 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.942 13.959 6.490 15.516 hybrid contribution -0.326 -0.238 -1.172 1.240 sum 1.616 13.721 5.318 14.804 Atomic orbital electron populations 1.22275 0.89287 1.06555 1.06901 1.21678 0.92893 0.83032 0.69694 1.90631 1.72986 1.32055 1.38585 1.23768 0.93874 0.85472 1.11346 1.22723 0.94982 0.96974 1.00047 1.22176 0.98782 0.93354 1.01681 1.22416 0.88086 0.89000 1.09946 1.16999 0.83804 0.84255 0.77537 1.90814 1.41812 1.58457 1.52984 1.45823 1.07377 1.09718 1.69987 1.20774 0.97362 0.78300 0.98390 1.19076 0.89276 0.98958 0.92827 1.20687 1.36362 1.04125 0.92819 0.91868 1.25660 0.95542 0.94636 1.01612 1.70088 1.40584 1.15970 1.27808 0.85705 0.78415 0.78647 0.80082 1.18503 1.21517 1.21080 1.23039 1.00576 1.01564 0.96159 1.22423 1.02832 0.90868 1.03157 1.84055 1.35480 1.14277 1.69605 0.89002 0.86179 0.86602 0.79425 0.80410 0.74993 0.94188 0.93332 0.93202 0.89028 0.89518 0.91827 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.53 10.32 71.24 0.74 -1.79 16 2 C 0.45 8.91 7.23 27.81 0.20 9.11 16 3 O -0.47 -11.36 17.62 -3.22 -0.06 -11.42 16 4 C -0.09 -2.13 7.09 24.33 0.17 -1.96 16 5 C -0.13 -2.81 10.66 22.62 0.24 -2.57 16 6 C -0.14 -3.54 10.58 22.30 0.24 -3.31 16 7 C -0.04 -1.19 7.13 24.30 0.17 -1.02 16 8 C 0.59 21.58 7.80 86.66 0.68 22.26 16 9 O -0.56 -23.85 16.87 -4.01 -0.07 -23.92 16 10 N -0.68 -25.33 5.46 -466.39 -2.55 -27.88 16 11 C 0.18 7.59 5.51 86.38 0.48 8.07 16 12 C 0.00 -0.03 1.38 -52.93 -0.07 -0.10 16 13 C -0.50 -24.75 8.71 25.60 0.22 -24.53 16 14 H 0.06 3.02 7.82 -2.91 -0.02 3.00 16 15 C 0.03 1.36 5.40 84.66 0.46 1.81 16 16 N -0.91 -49.93 12.85 21.45 0.28 -49.66 16 17 Si 0.94 41.28 29.54 68.60 2.03 43.31 16 18 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 C -0.18 -6.59 9.96 30.62 0.30 -6.28 16 22 C -0.15 -6.70 9.35 30.62 0.29 -6.42 16 23 O -0.14 -3.65 9.84 -7.57 -0.07 -3.72 16 24 H 0.09 1.22 7.52 -2.39 -0.02 1.20 16 25 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 28 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 29 H 0.41 13.92 8.21 -92.71 -0.76 13.16 16 30 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 2.02 8.09 -2.39 -0.02 2.00 16 32 H 0.26 13.79 8.32 -92.71 -0.77 13.02 16 33 H 0.09 2.98 8.14 -2.38 -0.02 2.96 16 34 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -61.93 327.68 4.01 -57.92 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.35 Total: 22.10 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 4.11 Total: -6.73 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -2.27 Total: -77.53 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.20 Total: -39.06 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -61.93 4.01 -57.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431152781.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.028 kcal (2) G-P(sol) polarization free energy of solvation -61.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds