Wall clock time and date at job start Mon Mar 30 2020 01:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45194 * 109.47027 * 2 1 4 4 C 1.34230 * 116.99877 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99796 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00236 * 179.97438 * 4 3 2 7 7 C 1.50695 * 109.47356 * 180.02562 * 6 4 3 8 8 O 1.21290 * 119.99981 * 0.02562 * 7 6 4 9 9 N 1.34772 * 120.00190 * 180.02562 * 7 6 4 10 10 C 1.39943 * 120.00270 * 174.89330 * 9 7 6 11 11 C 1.39288 * 119.94924 * 145.78163 * 10 9 7 12 12 C 1.38486 * 120.42930 * 179.97438 * 11 10 9 13 13 C 1.37688 * 120.32041 * 359.97438 * 12 11 10 14 14 C 1.40741 * 119.88462 * 0.02562 * 13 12 11 15 15 C 1.41416 * 120.20909 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00059 * 205.17667 * 15 14 13 17 17 C 1.39927 * 119.99759 * 25.18092 * 15 14 13 18 18 N 1.30837 * 120.00511 * 16.79779 * 17 15 14 19 19 Si 1.86801 * 119.99944 * 196.79970 * 17 15 14 20 20 H 1.48498 * 109.47031 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47222 * 119.99926 * 19 17 15 22 22 H 1.48503 * 109.47098 * 239.99627 * 19 17 15 23 23 C 1.38242 * 119.94355 * 325.50551 * 10 9 7 24 24 H 1.08992 * 109.47085 * 59.99713 * 1 2 3 25 25 H 1.08998 * 109.47162 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46526 * 300.00222 * 1 2 3 27 27 H 1.09003 * 109.46526 * 239.99778 * 2 1 3 28 28 H 1.09000 * 109.46860 * 120.00054 * 2 1 3 29 29 H 1.08999 * 109.47078 * 300.00276 * 6 4 3 30 30 H 1.08998 * 109.47009 * 59.99930 * 6 4 3 31 31 H 0.96993 * 120.00087 * 354.89263 * 9 7 6 32 32 H 1.07998 * 119.78564 * 359.97438 * 11 10 9 33 33 H 1.07994 * 119.84033 * 179.97438 * 12 11 10 34 34 H 1.08003 * 120.06080 * 179.97438 * 13 12 11 35 35 H 0.96990 * 120.00342 * 180.02562 * 18 17 15 36 36 H 1.07999 * 120.16072 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9208 2.9373 -0.0012 7 6 5.4257 2.8585 -0.0023 8 8 5.9763 1.7778 -0.0031 9 7 6.1598 3.9887 -0.0025 10 6 7.5533 3.9181 0.1043 11 6 8.3498 4.8458 -0.5628 12 6 9.7298 4.7855 -0.4636 13 6 10.3299 3.8070 0.2968 14 6 9.5379 2.8628 0.9765 15 6 10.1471 1.8545 1.7589 16 1 9.6287 0.9247 1.9403 17 6 11.4215 2.0618 2.2982 18 7 11.9134 3.2722 2.3684 19 14 12.4208 0.6104 2.9180 20 1 11.6459 -0.6418 2.7268 21 1 13.6938 0.5251 2.1579 22 1 12.7176 0.7940 4.3615 23 6 8.1370 2.9310 0.8764 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5845 3.4692 -0.8911 30 1 3.5852 3.4697 0.8888 31 1 5.7222 4.8512 -0.0767 32 1 7.8881 5.6172 -1.1613 33 1 10.3382 5.5094 -0.9852 34 1 11.4065 3.7636 0.3709 35 1 12.7969 3.4158 2.7418 36 1 7.5202 2.2137 1.3973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456728454.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:35 Heat of formation + Delta-G solvation = -101.252294 kcal Electronic energy + Delta-G solvation = -20531.237557 eV Core-core repulsion = 17173.395492 eV Total energy + Delta-G solvation = -3357.842065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.66534 -39.37818 -37.25195 -36.35221 -34.39039 -33.05276 -32.15878 -30.77247 -29.79767 -27.82156 -25.27698 -23.81243 -22.17825 -21.09701 -20.69797 -19.50209 -17.88294 -17.66425 -16.85748 -16.33154 -16.17539 -15.45241 -15.19088 -14.90333 -14.54576 -13.99398 -13.70493 -13.24614 -13.06531 -13.00086 -12.78860 -12.45690 -12.07452 -11.85127 -11.76916 -11.62593 -11.15450 -11.09149 -10.89211 -10.62273 -10.46221 -10.42451 -10.06168 -9.62714 -9.33930 -9.04240 -8.91102 -7.42677 -6.90312 -6.68930 -4.30871 2.26916 2.39466 2.61168 2.84969 3.12292 3.19620 3.21586 3.36840 3.67252 3.99898 4.47675 4.66989 4.72352 4.78239 4.93939 5.06509 5.08082 5.13778 5.50529 5.54076 5.71266 5.74895 6.26011 6.39013 6.40691 6.76467 7.03303 7.06387 7.09993 7.28075 7.57624 7.74475 7.82393 7.98736 8.12887 8.17896 8.28391 8.64860 8.75132 8.97036 9.01147 10.24252 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.003849 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.311716 B = 7272.654237 C = 8370.444471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.366 6.366 4 C 0.457 3.543 5 O -0.456 6.456 6 C -0.135 4.135 7 C 0.499 3.501 8 O -0.475 6.475 9 N -0.668 5.668 10 C 0.152 3.848 11 C -0.261 4.261 12 C -0.093 4.093 13 C -0.172 4.172 14 C 0.120 3.880 15 C -0.457 4.457 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.796 5.796 19 Si 0.908 3.092 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.210 4.210 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.279 0.721 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.106 1.003 -3.323 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.284 6.284 4 C 0.296 3.704 5 O -0.338 6.338 6 C -0.175 4.175 7 C 0.282 3.718 8 O -0.346 6.346 9 N -0.313 5.313 10 C 0.061 3.939 11 C -0.283 4.283 12 C -0.112 4.112 13 C -0.191 4.191 14 C 0.117 3.883 15 C -0.487 4.487 16 H 0.097 0.903 17 C -0.142 4.142 18 N -0.421 5.421 19 Si 0.732 3.268 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.231 4.231 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.232 0.768 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.137 0.863 35 H 0.090 0.910 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.319 -0.048 -3.213 16.633 hybrid contribution 0.224 -0.103 0.284 0.376 sum -16.095 -0.151 -2.929 16.360 Atomic orbital electron populations 1.21799 0.92719 1.02894 1.03396 1.22994 0.95103 0.80272 1.02814 1.86449 1.24609 1.32428 1.84935 1.22896 0.80676 0.92176 0.74683 1.90865 1.59488 1.42085 1.41367 1.21206 0.94725 0.93817 1.07783 1.19828 0.87934 0.85150 0.78873 1.90925 1.71934 1.27071 1.44650 1.43339 1.06468 1.08181 1.73329 1.17392 0.79622 0.98730 0.98175 1.20024 0.93691 1.04637 1.09905 1.20460 0.93291 0.98265 0.99155 1.21353 1.00019 0.97909 0.99851 1.17496 0.90061 0.91431 0.89349 1.19633 0.99891 1.01886 1.27283 0.90293 1.25903 0.97653 0.96484 0.94125 1.69834 1.16885 1.21385 1.34042 0.86270 0.79699 0.82251 0.78577 1.18330 1.19717 1.20032 1.20986 0.94911 1.02048 1.05171 0.91547 0.90312 0.91518 0.91215 0.91164 0.85198 0.85035 0.76779 0.89256 0.89031 0.86310 0.91020 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.29 37.16 0.38 -0.62 16 2 C 0.06 0.62 6.19 37.16 0.23 0.85 16 3 O -0.37 -4.31 10.22 -39.26 -0.40 -4.71 16 4 C 0.46 6.56 7.95 36.01 0.29 6.85 16 5 O -0.46 -8.80 13.93 -26.86 -0.37 -9.18 16 6 C -0.13 -1.53 6.30 -29.04 -0.18 -1.72 16 7 C 0.50 8.80 7.55 -10.99 -0.08 8.72 16 8 O -0.48 -11.19 11.94 -18.96 -0.23 -11.42 16 9 N -0.67 -11.51 5.34 -9.91 -0.05 -11.56 16 10 C 0.15 3.46 6.25 -83.76 -0.52 2.93 16 11 C -0.26 -5.75 9.97 -39.10 -0.39 -6.14 16 12 C -0.09 -2.18 10.02 -39.69 -0.40 -2.58 16 13 C -0.17 -4.57 8.69 -38.84 -0.34 -4.91 16 14 C 0.12 3.36 5.57 -106.85 -0.59 2.76 16 15 C -0.46 -12.86 9.05 -37.74 -0.34 -13.20 16 16 H 0.08 2.21 7.90 -52.49 -0.41 1.80 16 17 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 18 N -0.80 -20.99 10.94 55.55 0.61 -20.39 16 19 Si 0.91 19.50 29.59 -169.99 -5.03 14.47 16 20 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 C -0.21 -5.55 8.39 -38.69 -0.32 -5.87 16 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.40 4.95 8.82 -40.82 -0.36 4.59 16 32 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 34 H 0.12 3.24 6.17 -52.48 -0.32 2.92 16 35 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 36 H 0.11 2.90 6.48 -52.49 -0.34 2.56 16 LS Contribution 315.41 15.07 4.75 4.75 Total: -1.00 -34.80 315.41 -7.47 -42.27 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.38 Total: 6.80 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -2.37 Total: -11.04 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.55 Total: -31.95 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -1.00 Total: -25.30 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.80 -7.47 -42.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456728454.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.984 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds