Wall clock time and date at job start Mon Mar 30 2020 01:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45194 * 109.47027 * 2 1 4 4 C 1.34230 * 116.99877 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99796 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00236 * 179.97438 * 4 3 2 7 7 C 1.50695 * 109.47356 * 180.02562 * 6 4 3 8 8 O 1.21290 * 119.99981 * 0.02562 * 7 6 4 9 9 N 1.34772 * 120.00190 * 180.02562 * 7 6 4 10 10 C 1.39943 * 120.00270 * 174.89330 * 9 7 6 11 11 C 1.39288 * 119.94924 * 145.78163 * 10 9 7 12 12 C 1.38486 * 120.42930 * 179.97438 * 11 10 9 13 13 C 1.37688 * 120.32041 * 359.97438 * 12 11 10 14 14 C 1.40741 * 119.88462 * 0.02562 * 13 12 11 15 15 C 1.41416 * 120.20909 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00059 * 205.17667 * 15 14 13 17 17 C 1.39927 * 119.99759 * 25.18092 * 15 14 13 18 18 N 1.30837 * 120.00511 * 16.79779 * 17 15 14 19 19 Si 1.86801 * 119.99944 * 196.79970 * 17 15 14 20 20 H 1.48498 * 109.47031 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47222 * 119.99926 * 19 17 15 22 22 H 1.48503 * 109.47098 * 239.99627 * 19 17 15 23 23 C 1.38242 * 119.94355 * 325.50551 * 10 9 7 24 24 H 1.08992 * 109.47085 * 59.99713 * 1 2 3 25 25 H 1.08998 * 109.47162 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46526 * 300.00222 * 1 2 3 27 27 H 1.09003 * 109.46526 * 239.99778 * 2 1 3 28 28 H 1.09000 * 109.46860 * 120.00054 * 2 1 3 29 29 H 1.08999 * 109.47078 * 300.00276 * 6 4 3 30 30 H 1.08998 * 109.47009 * 59.99930 * 6 4 3 31 31 H 0.96993 * 120.00087 * 354.89263 * 9 7 6 32 32 H 1.07998 * 119.78564 * 359.97438 * 11 10 9 33 33 H 1.07994 * 119.84033 * 179.97438 * 12 11 10 34 34 H 1.08003 * 120.06080 * 179.97438 * 13 12 11 35 35 H 0.96990 * 120.00342 * 180.02562 * 18 17 15 36 36 H 1.07999 * 120.16072 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9208 2.9373 -0.0012 7 6 5.4257 2.8585 -0.0023 8 8 5.9763 1.7778 -0.0031 9 7 6.1598 3.9887 -0.0025 10 6 7.5533 3.9181 0.1043 11 6 8.3498 4.8458 -0.5628 12 6 9.7298 4.7855 -0.4636 13 6 10.3299 3.8070 0.2968 14 6 9.5379 2.8628 0.9765 15 6 10.1471 1.8545 1.7589 16 1 9.6287 0.9247 1.9403 17 6 11.4215 2.0618 2.2982 18 7 11.9134 3.2722 2.3684 19 14 12.4208 0.6104 2.9180 20 1 11.6459 -0.6418 2.7268 21 1 13.6938 0.5251 2.1579 22 1 12.7176 0.7940 4.3615 23 6 8.1370 2.9310 0.8764 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5845 3.4692 -0.8911 30 1 3.5852 3.4697 0.8888 31 1 5.7222 4.8512 -0.0767 32 1 7.8881 5.6172 -1.1613 33 1 10.3382 5.5094 -0.9852 34 1 11.4065 3.7636 0.3709 35 1 12.7969 3.4158 2.7418 36 1 7.5202 2.2137 1.3973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456728454.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:35 Heat of formation + Delta-G solvation = -124.108468 kcal Electronic energy + Delta-G solvation = -20532.228675 eV Core-core repulsion = 17173.395492 eV Total energy + Delta-G solvation = -3358.833183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.88022 -40.80083 -38.97867 -37.55915 -36.15636 -34.84881 -33.04449 -31.84610 -31.75371 -29.51887 -27.26680 -24.78838 -23.49814 -22.80278 -22.21392 -21.03266 -19.56784 -18.90129 -17.89128 -17.87248 -17.36914 -17.16986 -16.56319 -16.48827 -16.26984 -15.27583 -15.11529 -14.80698 -14.58885 -14.20595 -14.00432 -13.58014 -13.52505 -13.31112 -12.97793 -12.90508 -12.79762 -12.77964 -12.50010 -12.19125 -11.97893 -11.61692 -11.52325 -11.49576 -11.14147 -10.85306 -10.57647 -9.39909 -8.75767 -8.61533 -6.38618 0.85540 0.98926 1.19402 1.33963 1.40298 1.45396 1.49666 1.79566 2.19856 2.39100 2.72090 3.40378 3.72169 3.93559 3.99570 4.10594 4.28620 4.31173 4.37107 4.47580 4.64645 4.85907 4.94041 5.04826 5.09690 5.12151 5.15171 5.23576 5.32653 5.45505 5.76360 5.86181 6.07606 6.10799 6.34318 6.64243 6.68178 6.77402 6.92880 7.00461 7.37543 8.31819 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.003849 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.311716 B = 7272.654237 C = 8370.444471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.354 6.354 4 C 0.456 3.544 5 O -0.517 6.517 6 C -0.115 4.115 7 C 0.492 3.508 8 O -0.542 6.542 9 N -0.652 5.652 10 C 0.160 3.840 11 C -0.246 4.246 12 C -0.092 4.092 13 C -0.199 4.199 14 C 0.087 3.913 15 C -0.506 4.506 16 H 0.057 0.943 17 C 0.039 3.961 18 N -0.821 5.821 19 Si 0.980 3.020 20 H -0.269 1.269 21 H -0.257 1.257 22 H -0.259 1.259 23 C -0.239 4.239 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.184 0.816 30 H 0.178 0.822 31 H 0.427 0.573 32 H 0.138 0.862 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.290 0.710 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.044 3.144 -4.166 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.271 6.271 4 C 0.298 3.702 5 O -0.404 6.404 6 C -0.155 4.155 7 C 0.279 3.721 8 O -0.416 6.416 9 N -0.300 5.300 10 C 0.067 3.933 11 C -0.267 4.267 12 C -0.111 4.111 13 C -0.219 4.219 14 C 0.085 3.915 15 C -0.535 4.535 16 H 0.076 0.924 17 C -0.176 4.176 18 N -0.447 5.447 19 Si 0.801 3.199 20 H -0.193 1.193 21 H -0.181 1.181 22 H -0.184 1.184 23 C -0.261 4.261 24 H 0.093 0.907 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.201 0.799 30 H 0.195 0.805 31 H 0.266 0.734 32 H 0.156 0.844 33 H 0.143 0.857 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.331 2.174 -4.066 18.902 hybrid contribution 0.651 -0.687 0.466 1.055 sum -17.680 1.487 -3.600 18.104 Atomic orbital electron populations 1.21805 0.89669 1.04338 1.04067 1.23265 0.97410 0.79423 1.02085 1.86458 1.23093 1.33374 1.84167 1.23537 0.81020 0.92781 0.72896 1.90868 1.60926 1.44215 1.44371 1.21263 0.89106 0.92771 1.12325 1.20944 0.90595 0.83913 0.76673 1.90927 1.73834 1.29623 1.47254 1.43196 1.04301 1.09901 1.72633 1.17470 0.82560 0.97074 0.96238 1.20511 0.93076 1.04604 1.08536 1.20869 0.94671 0.97568 0.97949 1.21312 0.99342 0.99444 1.01764 1.17835 0.91183 0.92331 0.90188 1.19745 1.01965 1.01826 1.29991 0.92448 1.26662 0.97797 0.99395 0.93739 1.69851 1.17624 1.22898 1.34315 0.85205 0.78032 0.77900 0.78799 1.19349 1.18114 1.18375 1.20934 0.94420 1.03436 1.07286 0.90721 0.88528 0.90901 0.91921 0.92187 0.79927 0.80521 0.73390 0.84399 0.85713 0.87836 0.89955 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 10.29 71.98 0.74 -0.84 16 2 C 0.05 1.00 6.19 71.98 0.45 1.45 16 3 O -0.35 -7.66 10.22 -51.41 -0.53 -8.18 16 4 C 0.46 12.55 7.95 71.24 0.57 13.12 16 5 O -0.52 -20.69 13.93 29.71 0.41 -20.27 16 6 C -0.12 -2.21 6.30 29.10 0.18 -2.02 16 7 C 0.49 16.75 7.55 87.66 0.66 17.41 16 8 O -0.54 -26.48 11.94 20.38 0.24 -26.24 16 9 N -0.65 -20.83 5.34 -303.65 -1.62 -22.45 16 10 C 0.16 7.13 6.25 38.10 0.24 7.36 16 11 C -0.25 -10.13 9.97 22.58 0.23 -9.90 16 12 C -0.09 -4.19 10.02 22.20 0.22 -3.97 16 13 C -0.20 -10.88 8.69 22.75 0.20 -10.69 16 14 C 0.09 5.18 5.57 -21.31 -0.12 5.06 16 15 C -0.51 -30.47 9.05 23.46 0.21 -30.26 16 16 H 0.06 3.54 7.90 -2.91 -0.02 3.51 16 17 C 0.04 2.11 5.16 85.25 0.44 2.55 16 18 N -0.82 -44.62 10.94 21.82 0.24 -44.38 16 19 Si 0.98 41.42 29.59 68.60 2.03 43.45 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 C -0.24 -13.25 8.39 22.85 0.19 -13.05 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 27 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 28 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 29 H 0.18 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.18 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.43 8.58 8.82 -92.71 -0.82 7.76 16 32 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 33 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 34 H 0.10 5.87 6.17 -2.91 -0.02 5.86 16 35 H 0.29 14.03 8.30 -92.72 -0.77 13.26 16 36 H 0.08 4.67 6.48 -2.91 -0.02 4.65 16 Total: -1.00 -84.72 315.41 5.28 -79.44 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.29 Total: 22.43 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 4.21 Total: -23.79 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -1.38 Total: -66.83 kcal Atomic # 8 Polarization: -54.83 SS G_CDS: 0.13 Total: -54.70 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -84.72 5.28 -79.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456728454.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.669 kcal (2) G-P(sol) polarization free energy of solvation -84.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds