Wall clock time and date at job start Mon Mar 30 2020 01:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.87656 * 2 1 4 4 C 1.54330 * 110.01057 * 121.09698 * 2 1 3 5 5 H 1.09002 * 110.72149 * 23.14089 * 4 2 1 6 6 C 1.53001 * 110.71603 * 260.04516 * 4 2 1 7 7 O 1.42902 * 109.46730 * 174.99859 * 6 4 2 8 8 C 1.55148 * 102.94182 * 141.68230 * 4 2 1 9 9 C 1.55131 * 101.48876 * 324.33111 * 8 4 2 10 10 N 1.47019 * 109.88393 * 238.97958 * 2 1 3 11 11 S 1.65599 * 125.64929 * 61.45003 * 10 2 1 12 12 O 1.42106 * 104.27393 * 333.93242 * 11 10 2 13 13 O 1.42100 * 104.28186 * 206.07243 * 11 10 2 14 14 C 1.81399 * 104.44810 * 89.99987 * 11 10 2 15 15 C 1.52998 * 109.47111 * 180.02562 * 14 11 10 16 16 C 1.50706 * 109.47348 * 180.02562 * 15 14 11 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 H 1.08998 * 109.46987 * 179.56441 * 1 2 3 25 25 H 1.08994 * 109.47133 * 299.56227 * 1 2 3 26 26 H 1.09001 * 109.46918 * 59.56917 * 1 2 3 27 27 H 1.08991 * 109.47457 * 294.99858 * 6 4 2 28 28 H 1.08999 * 109.47075 * 55.00276 * 6 4 2 29 29 H 0.96700 * 113.99804 * 180.02562 * 7 6 4 30 30 H 1.09005 * 111.00873 * 82.57121 * 8 4 2 31 31 H 1.09003 * 111.00372 * 206.38003 * 8 4 2 32 32 H 1.08994 * 110.49465 * 278.45215 * 9 8 4 33 33 H 1.08998 * 110.34006 * 156.05807 * 9 8 4 34 34 H 1.09000 * 109.47241 * 60.00442 * 14 11 10 35 35 H 1.09002 * 109.47106 * 299.99999 * 14 11 10 36 36 H 1.09001 * 109.47671 * 60.00243 * 15 14 11 37 37 H 1.09006 * 109.47297 * 299.99963 * 15 14 11 38 38 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0581 -0.7490 1.2417 5 1 1.3092 -1.4449 1.6198 6 6 2.4758 0.2391 2.3327 7 8 2.8496 -0.4806 3.5093 8 6 3.2918 -1.5107 0.6895 9 6 2.8130 -1.8795 -0.7393 10 7 2.0301 -0.7125 -1.1848 11 16 1.7535 -0.2800 -2.7592 12 8 0.5292 0.4400 -2.7149 13 8 1.8609 -1.4989 -3.4817 14 6 3.1290 0.8282 -3.1724 15 6 2.9848 1.3022 -4.6199 16 6 4.1278 2.2224 -4.9635 17 1 4.8815 2.4469 -4.2232 18 6 4.2114 2.7775 -6.2227 19 7 3.2934 2.5045 -7.1240 20 14 5.6279 3.9186 -6.6482 21 1 5.4887 4.3777 -8.0536 22 1 5.6080 5.0927 -5.7392 23 1 6.9134 3.1920 -6.4904 24 1 -0.3633 -1.0276 -0.0078 25 1 -0.3633 0.5070 0.8938 26 1 -0.3633 0.5205 -0.8861 27 1 3.3228 0.8293 1.9835 28 1 1.6411 0.9015 2.5618 29 1 3.1261 0.0836 4.2443 30 1 4.1682 -0.8634 0.6566 31 1 3.4925 -2.4070 1.2765 32 1 2.1853 -2.7701 -0.7135 33 1 3.6682 -2.0360 -1.3968 34 1 4.0726 0.2949 -3.0567 35 1 3.1144 1.6899 -2.5051 36 1 2.0413 1.8357 -4.7354 37 1 2.9991 0.4407 -5.2876 38 1 2.5577 1.9123 -6.9029 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487405453.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:24 Heat of formation + Delta-G solvation = -165.555983 kcal Electronic energy + Delta-G solvation = -20463.198548 eV Core-core repulsion = 17238.012017 eV Total energy + Delta-G solvation = -3225.186531 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23806 -38.31790 -37.35160 -37.11560 -36.32586 -33.01844 -32.65614 -32.24048 -28.03580 -27.09231 -24.86787 -24.04902 -22.90655 -21.40965 -19.92936 -19.26920 -18.43447 -18.17496 -17.63499 -17.19834 -16.53487 -15.69033 -15.66323 -15.40870 -14.97104 -14.91630 -14.78559 -14.52498 -14.16968 -14.06382 -13.71388 -13.29034 -13.18341 -12.94977 -12.88724 -12.71261 -12.51279 -12.42847 -12.32278 -12.04022 -11.90166 -11.83093 -11.63882 -11.57326 -10.83317 -10.77447 -10.64171 -10.00821 -8.77372 -6.51828 -0.86212 1.52327 1.61005 1.62395 1.80400 2.53536 2.73209 2.93364 3.07312 3.23387 3.51429 3.68474 3.83955 3.93626 4.05049 4.16850 4.35905 4.40151 4.44733 4.48678 4.53992 4.62207 4.70856 4.75896 4.96008 4.97598 4.98555 5.02408 5.11218 5.16827 5.37586 5.44063 5.46200 5.78357 6.04721 6.41819 6.96123 7.31450 8.62194 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023882 B = 0.004618 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.172020 B = 6061.353158 C = 6589.157037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.148 3.852 3 H 0.087 0.913 4 C -0.089 4.089 5 H 0.092 0.908 6 C 0.087 3.913 7 O -0.588 6.588 8 C -0.112 4.112 9 C 0.108 3.892 10 N -1.009 6.009 11 S 2.630 3.370 12 O -0.981 6.981 13 O -0.994 6.994 14 C -0.583 4.583 15 C 0.005 3.995 16 C -0.615 4.615 17 H 0.067 0.933 18 C -0.041 4.041 19 N -0.935 5.935 20 Si 1.123 2.877 21 H -0.284 1.284 22 H -0.264 1.264 23 H -0.265 1.265 24 H 0.056 0.944 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.398 0.602 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.004 0.996 37 H 0.001 0.999 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.745 -4.853 22.716 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.042 3.958 3 H 0.105 0.895 4 C -0.109 4.109 5 H 0.111 0.889 6 C 0.008 3.992 7 O -0.397 6.397 8 C -0.151 4.151 9 C -0.016 4.016 10 N -0.848 5.848 11 S 2.729 3.271 12 O -0.971 6.971 13 O -0.984 6.984 14 C -0.715 4.715 15 C -0.034 4.034 16 C -0.653 4.653 17 H 0.085 0.915 18 C -0.238 4.238 19 N -0.571 5.571 20 Si 0.942 3.058 21 H -0.210 1.210 22 H -0.188 1.188 23 H -0.190 1.190 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.248 0.752 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.023 0.977 37 H 0.020 0.980 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.456 -4.750 20.531 21.078 hybrid contribution -0.433 -0.330 1.151 1.273 sum 0.022 -5.079 21.681 22.268 Atomic orbital electron populations 1.22546 0.94820 1.02862 1.04167 1.21427 0.94307 0.96206 0.83817 0.89528 1.22210 0.98397 0.97686 0.92569 0.88930 1.22111 0.99373 0.92715 0.84953 1.86402 1.89206 1.39150 1.24923 1.22847 0.97376 1.01707 0.93142 1.22298 0.94768 0.87426 0.97117 1.58548 1.67187 1.38052 1.20991 1.04257 0.76231 0.74582 0.72050 1.93473 1.42313 1.75680 1.85636 1.93495 1.88013 1.44805 1.72088 1.30316 1.19237 1.15812 1.06133 1.18989 0.98147 0.96367 0.89921 1.22317 1.10871 1.30966 1.01160 0.91486 1.27676 1.03483 0.99763 0.92921 1.70927 1.13111 1.35940 1.37170 0.82882 0.71977 0.74544 0.76350 1.20977 1.18839 1.18954 0.92535 0.89115 0.91673 0.92342 0.92040 0.75170 0.89705 0.88445 0.91055 0.90232 0.84460 0.84197 0.97736 0.98040 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.27 9.00 71.98 0.65 -3.63 16 2 C 0.15 3.20 3.25 45.34 0.15 3.35 16 3 H 0.09 1.67 7.82 -2.39 -0.02 1.65 16 4 C -0.09 -1.46 2.74 -9.61 -0.03 -1.49 16 5 H 0.09 1.56 7.85 -2.39 -0.02 1.54 16 6 C 0.09 1.09 6.33 71.98 0.46 1.54 16 7 O -0.59 -7.56 13.60 -148.98 -2.03 -9.59 16 8 C -0.11 -1.82 6.49 32.06 0.21 -1.61 16 9 C 0.11 2.37 6.90 86.93 0.60 2.97 16 10 N -1.01 -27.07 3.33 -483.87 -1.61 -28.68 16 11 S 2.63 96.69 5.64 -56.49 -0.32 96.37 16 12 O -0.98 -40.39 14.99 -127.65 -1.91 -42.30 16 13 O -0.99 -42.73 17.60 -127.65 -2.25 -44.97 16 14 C -0.58 -22.66 6.12 71.98 0.44 -22.22 16 15 C 0.00 0.24 4.29 29.85 0.13 0.37 16 16 C -0.61 -34.66 9.11 25.60 0.23 -34.43 16 17 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 18 C -0.04 -2.36 5.46 84.65 0.46 -1.90 16 19 N -0.93 -58.81 13.65 21.45 0.29 -58.52 16 20 Si 1.12 49.08 29.90 68.60 2.05 51.14 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 24 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.93 5.64 -2.39 -0.01 1.92 16 27 H 0.06 0.65 8.00 -2.39 -0.02 0.64 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.40 1.64 9.12 -74.06 -0.68 0.97 16 30 H 0.08 1.27 7.94 -2.38 -0.02 1.25 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.14 4.78 8.14 -2.39 -0.02 4.76 16 35 H 0.14 4.79 8.14 -2.39 -0.02 4.77 16 36 H 0.00 0.25 8.01 -2.39 -0.02 0.23 16 37 H 0.00 0.08 8.01 -2.38 -0.02 0.06 16 38 H 0.25 16.32 7.22 -92.71 -0.67 15.65 16 Total: -1.00 -78.20 322.21 -2.00 -80.20 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.47 Total: 13.40 kcal Atomic # 6 Polarization: -60.34 SS G_CDS: 3.30 Total: -57.04 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -1.32 Total: -87.20 kcal Atomic # 8 Polarization: -90.68 SS G_CDS: -6.19 Total: -96.86 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.05 Total: 51.14 kcal Atomic # 16 Polarization: 96.69 SS G_CDS: -0.32 Total: 96.37 kcal Total: -78.20 -2.00 -80.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487405453.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.355 kcal (2) G-P(sol) polarization free energy of solvation -78.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds