Wall clock time and date at job start Mon Mar 30 2020 01:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.99999 * 2 1 4 4 C 1.54330 * 109.87982 * 121.09325 * 2 1 3 5 5 H 1.09002 * 110.71679 * 215.58797 * 4 2 1 6 6 C 1.52997 * 110.72179 * 338.85999 * 4 2 1 7 7 O 1.42895 * 109.46955 * 179.97438 * 6 4 2 8 8 C 1.55157 * 102.94049 * 97.22745 * 4 2 1 9 9 C 1.54909 * 101.58478 * 35.49909 * 8 4 2 10 10 N 1.47020 * 109.88730 * 238.90010 * 2 1 3 11 11 S 1.65606 * 125.64468 * 59.48471 * 10 2 1 12 12 O 1.42095 * 104.27728 * 26.09241 * 11 10 2 13 13 O 1.42097 * 104.27592 * 153.95022 * 11 10 2 14 14 C 1.81399 * 104.45214 * 270.01882 * 11 10 2 15 15 C 1.52995 * 109.47387 * 179.97438 * 14 11 10 16 16 C 1.50701 * 109.47407 * 180.02562 * 15 14 11 17 17 H 1.07998 * 119.99432 * 0.02562 * 16 15 14 18 18 C 1.37869 * 119.99878 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00370 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99970 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46881 * 89.99757 * 20 18 16 22 22 H 1.48492 * 109.47302 * 210.00005 * 20 18 16 23 23 H 1.48500 * 109.46925 * 330.00305 * 20 18 16 24 24 H 1.08999 * 109.47177 * 298.90492 * 1 2 3 25 25 H 1.08995 * 109.47166 * 58.91027 * 1 2 3 26 26 H 1.09005 * 109.47230 * 178.90470 * 1 2 3 27 27 H 1.09005 * 109.47261 * 299.97926 * 6 4 2 28 28 H 1.09002 * 109.46937 * 59.97944 * 6 4 2 29 29 H 0.96703 * 113.99905 * 180.02562 * 7 6 4 30 30 H 1.09000 * 111.00345 * 153.57366 * 8 4 2 31 31 H 1.08993 * 111.00161 * 277.38576 * 8 4 2 32 32 H 1.09003 * 110.36608 * 81.82782 * 9 8 4 33 33 H 1.08990 * 110.36837 * 204.04035 * 9 8 4 34 34 H 1.09004 * 109.47118 * 300.00593 * 14 11 10 35 35 H 1.09004 * 109.46877 * 60.00215 * 14 11 10 36 36 H 1.09000 * 109.47163 * 300.00489 * 15 14 11 37 37 H 1.09004 * 109.46773 * 60.00352 * 15 14 11 38 38 H 0.97008 * 120.00225 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 2.9656 -0.2831 1.6183 6 6 0.9837 -0.8049 2.3339 7 8 1.4967 -1.5037 3.4699 8 6 2.3519 -2.1695 0.6925 9 6 2.8568 -1.8499 -0.7367 10 7 2.0301 -0.7141 -1.1838 11 16 1.7158 -0.3102 -2.7588 12 8 1.4539 1.0858 -2.7170 13 8 2.8255 -0.8261 -3.4810 14 6 0.2065 -1.2290 -3.1693 15 6 -0.1916 -0.9352 -4.6170 16 6 -1.4458 -1.6980 -4.9578 17 1 -1.9125 -2.3289 -4.2158 18 6 -1.9974 -1.5905 -6.2168 19 7 -1.4288 -0.8227 -7.1204 20 14 -3.5517 -2.5366 -6.6395 21 1 -4.7397 -1.7053 -6.3189 22 1 -3.5532 -2.8645 -8.0877 23 1 -3.5978 -3.7920 -5.8476 24 1 -0.3633 0.4967 0.8996 25 1 -0.3633 0.5306 -0.8800 26 1 -0.3634 -1.0275 -0.0196 27 1 0.7086 0.2090 2.6248 28 1 0.1045 -1.3251 1.9539 29 1 0.8697 -1.5776 4.2024 30 1 3.1270 -2.6618 1.2797 31 1 1.4453 -2.7738 0.6612 32 1 3.9092 -1.5667 -0.7127 33 1 2.7106 -2.7087 -1.3916 34 1 0.3882 -2.2973 -3.0515 35 1 -0.5987 -0.9216 -2.5019 36 1 -0.3733 0.1331 -4.7342 37 1 0.6135 -1.2423 -5.2846 38 1 -1.8167 -0.7473 -8.0064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487405454.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:26 Heat of formation + Delta-G solvation = -131.323202 kcal Electronic energy + Delta-G solvation = -20570.279327 eV Core-core repulsion = 17346.577241 eV Total energy + Delta-G solvation = -3223.702086 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.49659 -36.63732 -36.61131 -35.42838 -33.90743 -31.97995 -31.27830 -31.05420 -26.63234 -25.65581 -24.75246 -22.42588 -21.33295 -19.74636 -18.51572 -17.86679 -17.47411 -16.48428 -16.18744 -15.54335 -15.32887 -14.76253 -14.56279 -14.18690 -13.92602 -13.51005 -13.42213 -12.84109 -12.73069 -12.53435 -12.43866 -11.92062 -11.74387 -11.60053 -11.51626 -11.19003 -11.09859 -11.07337 -10.96950 -10.84451 -10.72525 -10.42032 -10.36971 -10.12528 -9.77746 -9.33328 -8.75910 -8.51258 -6.13187 -4.18902 0.73730 3.03437 3.25081 3.31378 3.34087 3.82458 4.27844 4.33486 4.36722 4.46585 4.65952 4.81031 5.03510 5.12311 5.13440 5.21907 5.24446 5.31041 5.41094 5.50294 5.52837 5.67215 5.70184 5.75451 5.85946 5.94892 6.07592 6.19393 6.25465 6.49058 6.53844 7.29049 7.34133 7.35118 7.79594 8.16665 8.84396 9.45879 10.97865 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.004745 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.208440 B = 5899.356194 C = 6458.356571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.094 4.094 5 H 0.090 0.910 6 C 0.083 3.917 7 O -0.574 6.574 8 C -0.118 4.118 9 C 0.120 3.880 10 N -1.015 6.015 11 S 2.604 3.396 12 O -0.961 6.961 13 O -0.962 6.962 14 C -0.590 4.590 15 C 0.028 3.972 16 C -0.519 4.519 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.379 0.621 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 -1.371 19.718 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.051 3.949 3 H 0.101 0.899 4 C -0.114 4.114 5 H 0.108 0.892 6 C 0.005 3.995 7 O -0.380 6.380 8 C -0.157 4.157 9 C -0.006 4.006 10 N -0.851 5.851 11 S 2.704 3.296 12 O -0.952 6.952 13 O -0.953 6.953 14 C -0.723 4.723 15 C -0.011 4.011 16 C -0.559 4.559 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.225 0.775 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.611 -0.715 18.536 19.380 hybrid contribution -1.901 -0.835 0.174 2.083 sum 3.710 -1.550 18.710 19.137 Atomic orbital electron populations 1.22571 0.95362 1.03099 1.03722 1.21108 0.93791 0.95959 0.84001 0.89949 1.22191 0.98972 0.97039 0.93175 0.89194 1.22325 0.95680 0.95508 0.85980 1.86455 1.44930 1.79177 1.27423 1.22780 1.02108 0.96018 0.94832 1.21953 0.94821 0.88311 0.95465 1.59014 1.63411 1.40624 1.22026 1.05357 0.77563 0.75457 0.71263 1.93528 1.86948 1.29768 1.84960 1.93537 1.49997 1.81650 1.70096 1.30572 1.17775 1.13265 1.10735 1.18968 0.98680 0.98663 0.84802 1.20988 1.09121 1.28006 0.97784 0.92071 1.25064 0.97695 0.95424 0.96273 1.69955 1.39940 1.38093 1.04855 0.86470 0.82974 0.80119 0.77720 1.20465 1.20981 1.19776 0.90690 0.91225 0.91268 0.93269 0.92622 0.77454 0.89892 0.90569 0.91386 0.90539 0.86299 0.86187 0.94872 0.94884 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.07 7.46 37.16 0.28 -1.80 16 2 C 0.16 1.88 3.31 -66.95 -0.22 1.65 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.09 -0.91 3.16 -88.78 -0.28 -1.19 16 5 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 6 C 0.08 0.65 5.17 37.16 0.19 0.85 16 7 O -0.57 -4.64 13.50 -35.23 -0.48 -5.11 16 8 C -0.12 -1.15 6.39 -24.58 -0.16 -1.30 16 9 C 0.12 1.43 6.89 -2.53 -0.02 1.41 16 10 N -1.01 -14.47 3.34 -104.42 -0.35 -14.82 16 11 S 2.60 48.94 5.17 -107.50 -0.56 48.38 16 12 O -0.96 -20.38 17.28 -57.54 -0.99 -21.37 16 13 O -0.96 -20.79 17.61 -57.54 -1.01 -21.80 16 14 C -0.59 -11.51 6.12 37.16 0.23 -11.28 16 15 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 16 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 20 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H 0.07 0.62 6.65 -51.93 -0.35 0.28 16 25 H 0.07 0.90 6.98 -51.93 -0.36 0.54 16 26 H 0.07 0.70 7.58 -51.93 -0.39 0.31 16 27 H 0.05 0.33 7.59 -51.93 -0.39 -0.06 16 28 H 0.06 0.41 6.62 -51.93 -0.34 0.07 16 29 H 0.38 1.41 9.12 45.56 0.42 1.82 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.71 8.02 -51.93 -0.42 0.30 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.12 2.10 8.14 -51.92 -0.42 1.67 16 35 H 0.12 2.10 6.94 -51.92 -0.36 1.74 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -35.39 319.77 -8.51 -43.90 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.12 Total: -0.11 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -0.53 Total: -24.23 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.39 Total: -40.62 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -2.48 Total: -48.29 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 48.94 SS G_CDS: -0.56 Total: 48.38 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.39 -8.51 -43.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487405454.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.424 kcal (2) G-P(sol) polarization free energy of solvation -35.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds