Wall clock time and date at job start Mon Mar 30 2020 01:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.99999 * 2 1 4 4 C 1.54330 * 109.87982 * 121.09325 * 2 1 3 5 5 H 1.09002 * 110.71679 * 215.58797 * 4 2 1 6 6 C 1.52997 * 110.72179 * 338.85999 * 4 2 1 7 7 O 1.42895 * 109.46955 * 179.97438 * 6 4 2 8 8 C 1.55157 * 102.94049 * 97.22745 * 4 2 1 9 9 C 1.54909 * 101.58478 * 35.49909 * 8 4 2 10 10 N 1.47020 * 109.88730 * 238.90010 * 2 1 3 11 11 S 1.65606 * 125.64468 * 59.48471 * 10 2 1 12 12 O 1.42095 * 104.27728 * 26.09241 * 11 10 2 13 13 O 1.42097 * 104.27592 * 153.95022 * 11 10 2 14 14 C 1.81399 * 104.45214 * 270.01882 * 11 10 2 15 15 C 1.52995 * 109.47387 * 179.97438 * 14 11 10 16 16 C 1.50701 * 109.47407 * 180.02562 * 15 14 11 17 17 H 1.07998 * 119.99432 * 0.02562 * 16 15 14 18 18 C 1.37869 * 119.99878 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00370 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99970 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46881 * 89.99757 * 20 18 16 22 22 H 1.48492 * 109.47302 * 210.00005 * 20 18 16 23 23 H 1.48500 * 109.46925 * 330.00305 * 20 18 16 24 24 H 1.08999 * 109.47177 * 298.90492 * 1 2 3 25 25 H 1.08995 * 109.47166 * 58.91027 * 1 2 3 26 26 H 1.09005 * 109.47230 * 178.90470 * 1 2 3 27 27 H 1.09005 * 109.47261 * 299.97926 * 6 4 2 28 28 H 1.09002 * 109.46937 * 59.97944 * 6 4 2 29 29 H 0.96703 * 113.99905 * 180.02562 * 7 6 4 30 30 H 1.09000 * 111.00345 * 153.57366 * 8 4 2 31 31 H 1.08993 * 111.00161 * 277.38576 * 8 4 2 32 32 H 1.09003 * 110.36608 * 81.82782 * 9 8 4 33 33 H 1.08990 * 110.36837 * 204.04035 * 9 8 4 34 34 H 1.09004 * 109.47118 * 300.00593 * 14 11 10 35 35 H 1.09004 * 109.46877 * 60.00215 * 14 11 10 36 36 H 1.09000 * 109.47163 * 300.00489 * 15 14 11 37 37 H 1.09004 * 109.46773 * 60.00352 * 15 14 11 38 38 H 0.97008 * 120.00225 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 2.9656 -0.2831 1.6183 6 6 0.9837 -0.8049 2.3339 7 8 1.4967 -1.5037 3.4699 8 6 2.3519 -2.1695 0.6925 9 6 2.8568 -1.8499 -0.7367 10 7 2.0301 -0.7141 -1.1838 11 16 1.7158 -0.3102 -2.7588 12 8 1.4539 1.0858 -2.7170 13 8 2.8255 -0.8261 -3.4810 14 6 0.2065 -1.2290 -3.1693 15 6 -0.1916 -0.9352 -4.6170 16 6 -1.4458 -1.6980 -4.9578 17 1 -1.9125 -2.3289 -4.2158 18 6 -1.9974 -1.5905 -6.2168 19 7 -1.4288 -0.8227 -7.1204 20 14 -3.5517 -2.5366 -6.6395 21 1 -4.7397 -1.7053 -6.3189 22 1 -3.5532 -2.8645 -8.0877 23 1 -3.5978 -3.7920 -5.8476 24 1 -0.3633 0.4967 0.8996 25 1 -0.3633 0.5306 -0.8800 26 1 -0.3634 -1.0275 -0.0196 27 1 0.7086 0.2090 2.6248 28 1 0.1045 -1.3251 1.9539 29 1 0.8697 -1.5776 4.2024 30 1 3.1270 -2.6618 1.2797 31 1 1.4453 -2.7738 0.6612 32 1 3.9092 -1.5667 -0.7127 33 1 2.7106 -2.7087 -1.3916 34 1 0.3882 -2.2973 -3.0515 35 1 -0.5987 -0.9216 -2.5019 36 1 -0.3733 0.1331 -4.7342 37 1 0.6135 -1.2423 -5.2846 38 1 -1.8167 -0.7473 -8.0064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487405454.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:25 Heat of formation + Delta-G solvation = -159.946538 kcal Electronic energy + Delta-G solvation = -20571.520528 eV Core-core repulsion = 17346.577241 eV Total energy + Delta-G solvation = -3224.943287 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.36145 -38.24985 -37.26553 -37.05799 -35.92554 -33.19211 -32.85943 -32.04538 -27.65830 -27.42857 -25.58173 -23.83999 -22.82089 -20.67889 -19.81624 -19.10688 -18.47836 -18.20486 -17.30929 -17.10061 -16.54969 -16.50838 -15.56087 -15.34634 -15.12375 -14.78987 -14.46582 -14.33810 -13.78157 -13.71491 -13.65525 -13.33327 -13.23427 -13.14040 -12.94846 -12.82304 -12.77555 -12.37496 -12.18329 -12.14757 -11.83465 -11.76631 -11.68867 -11.43545 -11.18950 -10.68765 -10.65921 -9.96895 -8.26990 -6.41566 -0.78381 1.40464 1.42529 1.53666 1.69935 2.37371 2.80445 2.98369 3.06498 3.29517 3.56772 3.73831 3.95950 4.04382 4.07511 4.22961 4.37935 4.40468 4.47243 4.56663 4.67283 4.69768 4.72014 4.81659 4.95177 5.04551 5.13003 5.22451 5.22984 5.25646 5.28255 5.40749 5.52649 5.66650 6.04138 6.71787 7.01021 7.28864 8.85434 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.004745 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.208440 B = 5899.356194 C = 6458.356571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.149 3.851 3 H 0.075 0.925 4 C -0.089 4.089 5 H 0.090 0.910 6 C 0.085 3.915 7 O -0.590 6.590 8 C -0.109 4.109 9 C 0.107 3.893 10 N -1.010 6.010 11 S 2.625 3.375 12 O -0.991 6.991 13 O -0.995 6.995 14 C -0.585 4.585 15 C 0.021 3.979 16 C -0.538 4.538 17 H 0.076 0.924 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.975 3.025 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.257 1.257 24 H 0.104 0.896 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.398 0.602 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.006 0.994 37 H 0.005 0.995 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.347 -2.838 22.217 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.043 3.957 3 H 0.093 0.907 4 C -0.109 4.109 5 H 0.109 0.891 6 C 0.008 3.992 7 O -0.399 6.399 8 C -0.148 4.148 9 C -0.017 4.017 10 N -0.849 5.849 11 S 2.725 3.275 12 O -0.981 6.981 13 O -0.986 6.986 14 C -0.717 4.717 15 C -0.018 4.018 16 C -0.577 4.577 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.799 3.201 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.181 1.181 24 H 0.123 0.877 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.248 0.752 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.024 0.976 37 H 0.023 0.977 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.420 -2.186 21.055 21.625 hybrid contribution -1.457 -0.356 -0.508 1.584 sum 2.963 -2.542 20.547 20.914 Atomic orbital electron populations 1.22643 0.94503 1.03907 1.04087 1.21362 0.94638 0.95777 0.83899 0.90679 1.22155 0.99644 0.96441 0.92638 0.89140 1.22274 0.94916 0.96501 0.85554 1.86397 1.46203 1.79187 1.28120 1.22764 1.02800 0.96216 0.93013 1.22264 0.94773 0.87523 0.97162 1.58607 1.63558 1.41744 1.20950 1.04344 0.76636 0.74469 0.72086 1.93481 1.87143 1.31590 1.85931 1.93487 1.51073 1.81980 1.72038 1.30453 1.19271 1.14981 1.07038 1.18825 0.97715 0.96849 0.88397 1.21486 1.09693 1.28117 0.98392 0.90541 1.26128 1.01478 0.96374 0.96208 1.70107 1.41993 1.39923 1.05428 0.85292 0.78310 0.79064 0.77468 1.19493 1.20857 1.18096 0.87732 0.93654 0.90091 0.91971 0.91729 0.75239 0.88525 0.89738 0.91091 0.90170 0.84149 0.83993 0.97585 0.97704 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.82 7.46 71.98 0.54 -3.28 16 2 C 0.15 3.29 3.31 45.34 0.15 3.44 16 3 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 4 C -0.09 -1.47 3.16 -9.60 -0.03 -1.50 16 5 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 6 C 0.09 1.04 5.17 71.98 0.37 1.41 16 7 O -0.59 -7.48 13.50 -148.98 -2.01 -9.49 16 8 C -0.11 -1.80 6.39 31.99 0.20 -1.59 16 9 C 0.11 2.38 6.89 86.86 0.60 2.98 16 10 N -1.01 -27.85 3.34 -484.28 -1.62 -29.47 16 11 S 2.63 100.18 5.17 -56.49 -0.29 99.89 16 12 O -0.99 -43.21 17.28 -127.65 -2.21 -45.41 16 13 O -1.00 -44.09 17.61 -127.65 -2.25 -46.34 16 14 C -0.59 -22.78 6.12 71.98 0.44 -22.34 16 15 C 0.02 1.12 4.98 29.85 0.15 1.27 16 16 C -0.54 -29.90 9.11 25.60 0.23 -29.67 16 17 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 19 N -0.94 -57.19 13.29 21.44 0.28 -56.90 16 20 Si 0.98 43.13 29.54 68.60 2.03 45.16 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 24 H 0.10 1.41 6.65 -2.39 -0.02 1.40 16 25 H 0.04 1.12 6.98 -2.39 -0.02 1.11 16 26 H 0.08 1.40 7.58 -2.38 -0.02 1.38 16 27 H 0.06 0.61 7.59 -2.38 -0.02 0.59 16 28 H 0.06 0.69 6.62 -2.39 -0.02 0.67 16 29 H 0.40 1.58 9.12 -74.05 -0.68 0.90 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.28 8.02 -2.39 -0.02 1.26 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.14 4.80 8.14 -2.39 -0.02 4.78 16 35 H 0.14 4.84 6.94 -2.39 -0.02 4.82 16 36 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 38 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -77.67 319.77 -2.57 -80.24 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.38 Total: 11.33 kcal Atomic # 6 Polarization: -52.13 SS G_CDS: 3.12 Total: -49.02 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -1.33 Total: -86.37 kcal Atomic # 8 Polarization: -94.77 SS G_CDS: -6.47 Total: -101.24 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 100.18 SS G_CDS: -0.29 Total: 99.89 kcal Total: -77.67 -2.57 -80.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487405454.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.706 kcal (2) G-P(sol) polarization free energy of solvation -77.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds