Wall clock time and date at job start Mon Mar 30 2020 02:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35733 * 116.99583 * 2 1 4 4 C 1.39183 * 119.84389 * 0.02562 * 3 2 1 5 5 C 1.36541 * 120.39563 * 179.97438 * 4 3 2 6 6 C 1.40074 * 120.05387 * 359.72841 * 5 4 3 7 7 C 1.46691 * 120.15802 * 180.29800 * 6 5 4 8 8 C 1.35317 * 120.00074 * 0.24853 * 7 6 5 9 9 C 1.41609 * 119.99892 * 180.02562 * 8 7 6 10 10 O 1.21801 * 120.00113 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00135 * 179.97438 * 9 8 7 12 12 C 1.36779 * 120.00146 * 180.02562 * 11 9 8 13 13 H 1.07998 * 120.00255 * 359.97438 * 12 11 9 14 14 C 1.39071 * 119.99848 * 180.02562 * 12 11 9 15 15 N 1.31364 * 119.99833 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99854 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46918 * 89.99882 * 16 14 12 18 18 H 1.48495 * 109.47172 * 209.99995 * 16 14 12 19 19 H 1.48506 * 109.47186 * 329.99882 * 16 14 12 20 20 C 1.40585 * 119.67894 * 0.54393 * 6 5 4 21 21 O 1.35691 * 120.19187 * 179.72612 * 20 6 5 22 22 C 1.42905 * 116.99845 * 179.72583 * 21 20 6 23 23 C 1.38392 * 119.61344 * 359.45898 * 20 6 5 24 24 H 1.09000 * 109.46612 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46878 * 299.99778 * 1 2 3 26 26 H 1.09000 * 109.46937 * 60.00324 * 1 2 3 27 27 H 1.08001 * 119.80139 * 359.95871 * 4 3 2 28 28 H 1.08002 * 119.96906 * 179.97438 * 5 4 3 29 29 H 1.08003 * 119.99616 * 180.25205 * 7 6 5 30 30 H 1.07998 * 119.99839 * 0.02562 * 8 7 6 31 31 H 0.97004 * 119.99820 * 0.02562 * 11 9 8 32 32 H 0.96998 * 119.99288 * 180.02562 * 15 14 12 33 33 H 1.09001 * 109.47103 * 179.97438 * 22 21 20 34 34 H 1.09000 * 109.47187 * 300.00278 * 22 21 20 35 35 H 1.09001 * 109.46558 * 60.00326 * 22 21 20 36 36 H 1.07997 * 120.02874 * 180.25026 * 23 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2839 2.3746 0.0005 5 6 1.8919 3.5971 0.0011 6 6 3.2899 3.6853 0.0068 7 6 3.9455 4.9976 0.0140 8 6 3.1996 6.1266 0.0202 9 6 3.8325 7.3933 0.0266 10 8 5.0483 7.4666 0.0270 11 7 3.0896 8.5178 0.0322 12 6 3.7010 9.7414 0.0378 13 1 4.7790 9.8064 0.0382 14 6 2.9343 10.9017 0.0441 15 7 1.6231 10.8225 0.0442 16 14 3.7693 12.5727 0.0526 17 1 3.9900 13.0227 -1.3452 18 1 2.9061 13.5537 0.7580 19 1 5.0754 12.4699 0.7516 20 6 4.0615 2.5102 0.0004 21 8 5.4165 2.5836 0.0003 22 6 6.1331 1.3472 -0.0003 23 6 3.4312 1.2782 -0.0001 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2057 2.3113 0.0003 28 1 1.2945 4.4969 0.0011 29 1 5.0236 5.0625 0.0143 30 1 2.1216 6.0615 0.0202 31 1 2.1213 8.4594 0.0322 32 1 1.0885 11.6319 0.0482 33 1 7.2044 1.5482 -0.0008 34 1 5.8708 0.7748 0.8895 35 1 5.8706 0.7756 -0.8905 36 1 4.0174 0.3712 -0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491364393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:46 Heat of formation + Delta-G solvation = -67.160519 kcal Electronic energy + Delta-G solvation = -20227.097209 eV Core-core repulsion = 16870.733475 eV Total energy + Delta-G solvation = -3356.363735 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.56998 -39.08052 -38.29181 -36.74382 -34.14168 -32.93917 -31.26816 -30.55014 -29.36760 -27.44887 -27.16227 -25.27829 -23.39740 -22.06114 -20.75115 -18.83896 -18.53884 -17.73984 -16.99422 -16.47551 -16.07346 -15.92615 -15.62229 -15.23766 -14.78346 -14.60348 -14.02611 -13.73655 -13.36828 -13.29182 -12.83521 -12.74294 -12.43535 -12.15915 -11.80356 -11.74815 -11.56292 -11.14357 -11.04407 -10.90547 -10.75883 -10.41576 -10.26092 -9.66284 -9.34175 -8.65339 -8.36229 -8.00924 -7.42045 -6.51607 -3.79961 0.89910 1.37328 2.44195 2.97655 3.19929 3.24144 3.27985 3.30889 3.82605 4.14815 4.52807 4.64011 4.80808 4.91048 4.91214 4.91693 4.99889 5.05875 5.20071 5.29391 5.37785 5.40131 5.43347 5.45965 5.62413 5.79013 6.14339 6.15819 6.36149 6.46756 6.60018 7.05908 7.14415 7.17408 7.39604 7.47474 8.05895 8.60236 9.14316 9.52046 10.11449 10.65414 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.003375 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.302237 B = 8293.723553 C = 9334.569041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.158 3.842 4 C -0.239 4.239 5 C -0.037 4.037 6 C -0.111 4.111 7 C -0.061 4.061 8 C -0.174 4.174 9 C 0.456 3.544 10 O -0.608 6.608 11 N -0.546 5.546 12 C -0.289 4.289 13 H 0.107 0.893 14 C 0.020 3.980 15 N -0.890 5.890 16 Si 0.934 3.066 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.267 1.267 20 C 0.175 3.825 21 O -0.300 6.300 22 C 0.025 3.975 23 C -0.244 4.244 24 H 0.098 0.902 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.129 0.871 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.110 0.890 31 H 0.393 0.607 32 H 0.275 0.725 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.218 -20.811 -0.087 21.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.112 3.888 4 C -0.258 4.258 5 C -0.056 4.056 6 C -0.112 4.112 7 C -0.083 4.083 8 C -0.196 4.196 9 C 0.248 3.752 10 O -0.497 6.497 11 N -0.179 5.179 12 C -0.419 4.419 13 H 0.125 0.875 14 C -0.183 4.183 15 N -0.530 5.530 16 Si 0.760 3.240 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.192 1.192 20 C 0.129 3.871 21 O -0.213 6.213 22 C -0.070 4.070 23 C -0.263 4.263 24 H 0.116 0.884 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.147 0.853 28 H 0.156 0.844 29 H 0.152 0.848 30 H 0.128 0.872 31 H 0.227 0.773 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.373 -20.569 -0.079 20.706 hybrid contribution -0.685 0.635 -0.009 0.933 sum -3.057 -19.935 -0.088 20.168 Atomic orbital electron populations 1.23073 0.78199 1.03794 1.01711 1.85989 1.21564 1.27192 1.88414 1.18771 0.91445 0.84070 0.94486 1.20805 1.00101 0.92073 1.12813 1.20849 0.92924 0.97637 0.94161 1.18428 0.92075 0.91644 1.09076 1.21850 1.00317 0.88961 0.97122 1.22089 0.99382 0.93931 1.04162 1.16658 0.87719 0.84488 0.86351 1.90654 1.13661 1.87589 1.57830 1.41985 1.09162 1.05312 1.61460 1.19856 0.94274 0.81994 1.45783 0.87501 1.25391 0.95387 1.00377 0.97096 1.69597 1.04273 1.30450 1.48707 0.85793 0.79109 0.80543 0.78546 1.20215 1.20785 1.19183 1.18816 0.82526 0.92359 0.93447 1.86134 1.15011 1.32403 1.87704 1.23114 0.97039 0.85495 1.01351 1.20241 0.92550 0.97301 1.16223 0.88361 0.92419 0.92428 0.85281 0.84352 0.84769 0.87186 0.77308 0.91552 0.88020 0.92552 0.92563 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.80 101.05 0.99 1.18 16 2 O -0.32 -3.50 10.48 -18.91 -0.20 -3.69 16 3 C 0.16 1.96 6.69 -39.03 -0.26 1.70 16 4 C -0.24 -2.87 8.96 -39.84 -0.36 -3.22 16 5 C -0.04 -0.52 9.35 -39.51 -0.37 -0.89 16 6 C -0.11 -1.78 5.88 -104.91 -0.62 -2.40 16 7 C -0.06 -1.16 9.17 -37.21 -0.34 -1.50 16 8 C -0.17 -3.55 9.18 -39.34 -0.36 -3.91 16 9 C 0.46 11.69 7.51 -14.97 -0.11 11.58 16 10 O -0.61 -17.77 15.68 5.10 0.08 -17.69 16 11 N -0.55 -14.44 5.26 -13.61 -0.07 -14.51 16 12 C -0.29 -8.20 9.68 -15.04 -0.15 -8.34 16 13 H 0.11 3.17 7.15 -52.49 -0.38 2.80 16 14 C 0.02 0.55 5.50 -17.44 -0.10 0.45 16 15 N -0.89 -24.09 13.05 55.50 0.72 -23.37 16 16 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 C 0.18 2.57 6.70 -38.64 -0.26 2.31 16 21 O -0.30 -4.29 9.68 -18.78 -0.18 -4.47 16 22 C 0.03 0.23 9.81 101.05 0.99 1.22 16 23 C -0.24 -3.11 8.97 -39.33 -0.35 -3.46 16 24 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.36 7.65 -51.93 -0.40 -0.03 16 26 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 27 H 0.13 1.20 6.26 -52.49 -0.33 0.88 16 28 H 0.14 1.73 6.15 -52.49 -0.32 1.40 16 29 H 0.13 2.81 7.03 -52.48 -0.37 2.45 16 30 H 0.11 1.88 6.07 -52.49 -0.32 1.56 16 31 H 0.39 9.81 7.85 -40.82 -0.32 9.49 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 35 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 36 H 0.14 1.44 6.30 -52.49 -0.33 1.11 16 LS Contribution 314.26 15.07 4.74 4.74 Total: -1.00 -33.55 314.26 -5.16 -38.71 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -3.94 Total: 9.64 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.29 Total: -5.28 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.65 Total: -37.88 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.30 Total: -25.86 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.55 -5.16 -38.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491364393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.452 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds