Wall clock time and date at job start Mon Mar 30 2020 02:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35733 * 116.99583 * 2 1 4 4 C 1.39183 * 119.84389 * 0.02562 * 3 2 1 5 5 C 1.36541 * 120.39563 * 179.97438 * 4 3 2 6 6 C 1.40074 * 120.05387 * 359.72841 * 5 4 3 7 7 C 1.46691 * 120.15802 * 180.29800 * 6 5 4 8 8 C 1.35317 * 120.00074 * 0.24853 * 7 6 5 9 9 C 1.41609 * 119.99892 * 180.02562 * 8 7 6 10 10 O 1.21801 * 120.00113 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00135 * 179.97438 * 9 8 7 12 12 C 1.36779 * 120.00146 * 180.02562 * 11 9 8 13 13 H 1.07998 * 120.00255 * 359.97438 * 12 11 9 14 14 C 1.39071 * 119.99848 * 180.02562 * 12 11 9 15 15 N 1.31364 * 119.99833 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99854 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46918 * 89.99882 * 16 14 12 18 18 H 1.48495 * 109.47172 * 209.99995 * 16 14 12 19 19 H 1.48506 * 109.47186 * 329.99882 * 16 14 12 20 20 C 1.40585 * 119.67894 * 0.54393 * 6 5 4 21 21 O 1.35691 * 120.19187 * 179.72612 * 20 6 5 22 22 C 1.42905 * 116.99845 * 179.72583 * 21 20 6 23 23 C 1.38392 * 119.61344 * 359.45898 * 20 6 5 24 24 H 1.09000 * 109.46612 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46878 * 299.99778 * 1 2 3 26 26 H 1.09000 * 109.46937 * 60.00324 * 1 2 3 27 27 H 1.08001 * 119.80139 * 359.95871 * 4 3 2 28 28 H 1.08002 * 119.96906 * 179.97438 * 5 4 3 29 29 H 1.08003 * 119.99616 * 180.25205 * 7 6 5 30 30 H 1.07998 * 119.99839 * 0.02562 * 8 7 6 31 31 H 0.97004 * 119.99820 * 0.02562 * 11 9 8 32 32 H 0.96998 * 119.99288 * 180.02562 * 15 14 12 33 33 H 1.09001 * 109.47103 * 179.97438 * 22 21 20 34 34 H 1.09000 * 109.47187 * 300.00278 * 22 21 20 35 35 H 1.09001 * 109.46558 * 60.00326 * 22 21 20 36 36 H 1.07997 * 120.02874 * 180.25026 * 23 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2839 2.3746 0.0005 5 6 1.8919 3.5971 0.0011 6 6 3.2899 3.6853 0.0068 7 6 3.9455 4.9976 0.0140 8 6 3.1996 6.1266 0.0202 9 6 3.8325 7.3933 0.0266 10 8 5.0483 7.4666 0.0270 11 7 3.0896 8.5178 0.0322 12 6 3.7010 9.7414 0.0378 13 1 4.7790 9.8064 0.0382 14 6 2.9343 10.9017 0.0441 15 7 1.6231 10.8225 0.0442 16 14 3.7693 12.5727 0.0526 17 1 3.9900 13.0227 -1.3452 18 1 2.9061 13.5537 0.7580 19 1 5.0754 12.4699 0.7516 20 6 4.0615 2.5102 0.0004 21 8 5.4165 2.5836 0.0003 22 6 6.1331 1.3472 -0.0003 23 6 3.4312 1.2782 -0.0001 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2057 2.3113 0.0003 28 1 1.2945 4.4969 0.0011 29 1 5.0236 5.0625 0.0143 30 1 2.1216 6.0615 0.0202 31 1 2.1213 8.4594 0.0322 32 1 1.0885 11.6319 0.0482 33 1 7.2044 1.5482 -0.0008 34 1 5.8708 0.7748 0.8895 35 1 5.8706 0.7756 -0.8905 36 1 4.0174 0.3712 -0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491364393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:46 Heat of formation + Delta-G solvation = -90.795606 kcal Electronic energy + Delta-G solvation = -20228.122104 eV Core-core repulsion = 16870.733475 eV Total energy + Delta-G solvation = -3357.388629 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.57344 -40.28684 -39.97071 -37.82200 -36.12966 -34.40764 -33.32151 -31.55450 -30.55173 -28.21985 -28.12415 -27.04944 -24.76935 -23.14163 -22.16118 -20.44483 -19.77233 -19.55986 -18.34606 -17.61617 -17.14820 -16.92582 -16.57161 -16.43458 -16.40211 -15.78427 -15.66706 -15.39564 -15.03556 -14.69108 -14.01153 -13.74242 -13.59999 -13.41469 -13.04961 -12.97026 -12.82237 -12.48871 -12.46371 -12.20975 -12.11327 -11.89390 -11.81682 -11.57473 -10.72187 -10.46975 -10.07600 -9.65734 -8.67179 -8.53713 -5.95178 -0.36206 0.36558 1.02746 1.41058 1.45151 1.55035 2.13045 2.29224 2.41868 2.47532 2.83143 3.33157 3.33230 3.68757 3.91823 4.00498 4.19134 4.21316 4.28659 4.39018 4.43023 4.44296 4.48308 4.56899 4.73562 4.77135 4.79677 5.01873 5.08159 5.29059 5.35345 5.46864 5.53971 5.68920 6.01477 6.25123 6.42083 6.56661 7.07368 7.50235 8.09837 8.63660 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.003375 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.302237 B = 8293.723553 C = 9334.569041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.172 3.828 4 C -0.239 4.239 5 C -0.028 4.028 6 C -0.157 4.157 7 C -0.018 4.018 8 C -0.210 4.210 9 C 0.458 3.542 10 O -0.655 6.655 11 N -0.555 5.555 12 C -0.335 4.335 13 H 0.080 0.920 14 C -0.011 4.011 15 N -0.911 5.911 16 Si 0.998 3.002 17 H -0.268 1.268 18 H -0.266 1.266 19 H -0.273 1.273 20 C 0.178 3.822 21 O -0.329 6.329 22 C 0.015 3.985 23 C -0.251 4.251 24 H 0.122 0.878 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.161 0.839 28 H 0.150 0.850 29 H 0.107 0.893 30 H 0.145 0.855 31 H 0.398 0.602 32 H 0.282 0.718 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 -23.096 -0.113 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.126 3.874 4 C -0.258 4.258 5 C -0.046 4.046 6 C -0.158 4.158 7 C -0.040 4.040 8 C -0.230 4.230 9 C 0.251 3.749 10 O -0.547 6.547 11 N -0.189 5.189 12 C -0.465 4.465 13 H 0.098 0.902 14 C -0.212 4.212 15 N -0.551 5.551 16 Si 0.821 3.179 17 H -0.193 1.193 18 H -0.190 1.190 19 H -0.197 1.197 20 C 0.131 3.869 21 O -0.242 6.242 22 C -0.079 4.079 23 C -0.271 4.271 24 H 0.141 0.859 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.178 0.822 28 H 0.167 0.833 29 H 0.125 0.875 30 H 0.162 0.838 31 H 0.233 0.767 32 H 0.092 0.908 33 H 0.135 0.865 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.081 -22.891 -0.106 23.253 hybrid contribution -0.174 0.869 -0.004 0.887 sum -4.255 -22.022 -0.110 22.430 Atomic orbital electron populations 1.23448 0.75867 1.05904 1.02722 1.86006 1.23928 1.26266 1.87628 1.18981 0.91548 0.84890 0.92006 1.21100 1.01725 0.91066 1.11878 1.21030 0.91925 0.99020 0.92616 1.18384 0.93413 0.90345 1.13635 1.21887 0.99090 0.90606 0.92405 1.21857 1.00994 0.91467 1.08719 1.17448 0.87212 0.85985 0.84287 1.90601 1.15882 1.88559 1.59648 1.41926 1.09285 1.05100 1.62575 1.19768 0.93481 0.83691 1.49573 0.90191 1.26180 0.96034 1.03242 0.95755 1.69647 1.05043 1.31727 1.48651 0.84858 0.77979 0.76206 0.78875 1.19339 1.19030 1.19732 1.18948 0.82836 0.92654 0.92498 1.86105 1.15185 1.35379 1.87514 1.23445 0.97439 0.84191 1.02793 1.20432 0.93211 0.97227 1.16185 0.85938 0.91363 0.91366 0.82173 0.83255 0.87461 0.83784 0.76718 0.90842 0.86520 0.91046 0.91047 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.80 113.37 1.11 1.25 16 2 O -0.33 -5.85 10.48 -90.57 -0.95 -6.80 16 3 C 0.17 3.70 6.69 22.62 0.15 3.85 16 4 C -0.24 -4.90 8.96 22.10 0.20 -4.70 16 5 C -0.03 -0.71 9.35 22.32 0.21 -0.50 16 6 C -0.16 -4.92 5.88 -20.05 -0.12 -5.04 16 7 C -0.02 -0.71 9.17 23.80 0.22 -0.49 16 8 C -0.21 -8.77 9.18 22.43 0.21 -8.56 16 9 C 0.46 24.62 7.51 85.07 0.64 25.26 16 10 O -0.65 -40.56 15.68 -4.67 -0.07 -40.63 16 11 N -0.56 -30.71 5.26 -315.14 -1.66 -32.37 16 12 C -0.34 -19.94 9.68 84.12 0.81 -19.12 16 13 H 0.08 5.07 7.15 -2.91 -0.02 5.05 16 14 C -0.01 -0.61 5.50 84.96 0.47 -0.14 16 15 N -0.91 -49.71 13.05 21.69 0.28 -49.43 16 16 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 20 C 0.18 5.01 6.70 22.88 0.15 5.17 16 21 O -0.33 -9.26 9.68 -90.10 -0.87 -10.13 16 22 C 0.02 0.25 9.81 113.37 1.11 1.37 16 23 C -0.25 -5.76 8.97 22.43 0.20 -5.56 16 24 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.07 0.55 7.65 -2.39 -0.02 0.54 16 26 H 0.07 0.55 7.65 -2.39 -0.02 0.53 16 27 H 0.16 2.25 6.26 -2.91 -0.02 2.23 16 28 H 0.15 3.38 6.15 -2.91 -0.02 3.36 16 29 H 0.11 4.75 7.03 -2.91 -0.02 4.73 16 30 H 0.14 4.90 6.07 -2.91 -0.02 4.88 16 31 H 0.40 20.61 7.85 -92.71 -0.73 19.88 16 32 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 33 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 35 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 36 H 0.16 2.83 6.30 -2.91 -0.02 2.81 16 Total: -1.00 -76.02 314.26 4.52 -71.50 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.40 Total: 29.57 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 5.36 Total: -7.22 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -1.38 Total: -81.80 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -1.89 Total: -57.56 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -76.02 4.52 -71.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491364393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.295 kcal (2) G-P(sol) polarization free energy of solvation -76.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds