Wall clock time and date at job start Mon Mar 30 2020 02:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35744 * 116.99498 * 2 1 4 4 C 1.39189 * 119.83945 * 359.97438 * 3 2 1 5 5 C 1.36539 * 120.38983 * 179.97438 * 4 3 2 6 6 C 1.40068 * 120.06013 * 359.97438 * 5 4 3 7 7 C 1.46683 * 120.16333 * 180.02562 * 6 5 4 8 8 C 1.35317 * 119.99785 * 314.63815 * 7 6 5 9 9 C 1.41604 * 120.00189 * 349.36858 * 8 7 6 10 10 O 1.21807 * 120.00185 * 353.16553 * 9 8 7 11 11 N 1.34779 * 120.00387 * 173.16509 * 9 8 7 12 12 C 1.36780 * 120.00078 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00078 * 0.02562 * 12 11 9 14 14 C 1.39073 * 119.99808 * 180.02562 * 12 11 9 15 15 N 1.31362 * 119.99882 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99742 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47335 * 60.00032 * 16 14 12 18 18 H 1.48505 * 109.46851 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47259 * 299.99958 * 16 14 12 20 20 C 1.40592 * 119.67904 * 0.29388 * 6 5 4 21 21 O 1.35688 * 120.19669 * 179.70631 * 20 6 5 22 22 C 1.42894 * 117.00319 * 179.97438 * 21 20 6 23 23 C 1.38398 * 119.61152 * 359.44824 * 20 6 5 24 24 H 1.08989 * 109.47476 * 299.99888 * 1 2 3 25 25 H 1.09004 * 109.46707 * 60.00614 * 1 2 3 26 26 H 1.08999 * 109.46604 * 179.97438 * 1 2 3 27 27 H 1.07993 * 119.80082 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.96808 * 179.97438 * 5 4 3 29 29 H 1.08006 * 120.00315 * 134.63503 * 7 6 5 30 30 H 1.08004 * 119.99849 * 169.64011 * 8 7 6 31 31 H 0.96998 * 119.99767 * 0.02562 * 11 9 8 32 32 H 0.97000 * 119.99444 * 179.97438 * 15 14 12 33 33 H 1.09002 * 109.47150 * 59.99810 * 22 21 20 34 34 H 1.09000 * 109.47444 * 179.97438 * 22 21 20 35 35 H 1.08993 * 109.47205 * 299.99653 * 22 21 20 36 36 H 1.07998 * 120.03232 * 180.27263 * 23 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2837 2.3747 -0.0005 5 6 1.8918 3.5972 0.0000 6 6 3.2897 3.6855 0.0016 7 6 3.9453 4.9977 0.0027 8 6 3.5120 5.9712 -0.8314 9 6 2.5847 5.6643 -1.8566 10 8 2.2719 4.5062 -2.0683 11 7 2.0481 6.6535 -2.5983 12 6 1.1528 6.3569 -3.5889 13 1 0.8755 5.3301 -3.7765 14 6 0.5995 7.3776 -4.3545 15 7 0.9372 8.6264 -4.1266 16 14 -0.6237 6.9726 -5.7069 17 1 -1.8020 6.2859 -5.1193 18 1 -1.0612 8.2270 -6.3705 19 1 0.0201 6.0830 -6.7065 20 6 4.0615 2.5104 -0.0036 21 8 5.4164 2.5838 -0.0081 22 6 6.1330 1.3475 -0.0126 23 6 3.4312 1.2783 0.0014 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 0.2057 2.3113 -0.0014 28 1 1.2943 4.4969 -0.0009 29 1 4.7738 5.1869 0.6693 30 1 3.8768 6.9814 -0.7179 31 1 2.2974 7.5756 -2.4300 32 1 0.5516 9.3383 -4.6609 33 1 5.8676 0.7770 -0.9027 34 1 7.2043 1.5486 -0.0164 35 1 5.8738 0.7740 0.8773 36 1 4.0174 0.3713 0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491364394.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:48 Heat of formation + Delta-G solvation = -52.932279 kcal Electronic energy + Delta-G solvation = -21194.196889 eV Core-core repulsion = 17838.450137 eV Total energy + Delta-G solvation = -3355.746752 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.16660 -38.72440 -38.40617 -36.14348 -34.11836 -32.53032 -31.32743 -30.08095 -29.04544 -27.09411 -26.85054 -25.23826 -22.97538 -21.58022 -20.88147 -18.59794 -18.36727 -17.60002 -16.69171 -16.24664 -15.75903 -15.66991 -15.29198 -14.94807 -14.60765 -14.29919 -13.93720 -13.64396 -13.05275 -12.90943 -12.76575 -12.33909 -12.13951 -12.03554 -11.65154 -11.56742 -11.34073 -11.13632 -10.88697 -10.62493 -10.49651 -10.28352 -10.27464 -9.59473 -8.89970 -8.40486 -8.09954 -7.79917 -7.00004 -6.53935 -3.82680 1.41960 1.99278 2.48665 3.19447 3.20611 3.25181 3.37497 3.64340 4.12024 4.32432 4.46578 5.11830 5.17939 5.25271 5.26938 5.28226 5.28547 5.35121 5.43953 5.45559 5.53973 5.59306 5.82177 5.89073 5.97039 6.20987 6.30790 6.58421 6.72924 6.89633 6.99212 7.06851 7.28042 7.44451 7.55726 7.82783 8.04004 8.58556 9.12522 9.50805 10.11333 10.62646 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017772 B = 0.005111 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.157336 B = 5476.955226 C = 6544.083313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.161 3.839 4 C -0.250 4.250 5 C 0.051 3.949 6 C -0.104 4.104 7 C -0.055 4.055 8 C -0.186 4.186 9 C 0.448 3.552 10 O -0.590 6.590 11 N -0.544 5.544 12 C -0.289 4.289 13 H 0.106 0.894 14 C 0.022 3.978 15 N -0.889 5.889 16 Si 0.933 3.067 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.167 3.833 21 O -0.310 6.310 22 C 0.028 3.972 23 C -0.258 4.258 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.094 0.906 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.393 0.607 32 H 0.275 0.725 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.670 -10.577 9.695 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.116 3.884 4 C -0.269 4.269 5 C 0.032 3.968 6 C -0.105 4.105 7 C -0.077 4.077 8 C -0.207 4.207 9 C 0.240 3.760 10 O -0.478 6.478 11 N -0.176 5.176 12 C -0.419 4.419 13 H 0.124 0.876 14 C -0.181 4.181 15 N -0.529 5.529 16 Si 0.759 3.241 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.197 1.197 20 C 0.122 3.878 21 O -0.223 6.223 22 C -0.067 4.067 23 C -0.278 4.278 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.112 0.888 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.226 0.774 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.576 -11.125 9.397 14.995 hybrid contribution -0.673 0.428 -0.873 1.182 sum 2.903 -10.697 8.525 13.983 Atomic orbital electron populations 1.23002 0.78645 1.03226 1.01702 1.85938 1.21255 1.27688 1.88767 1.18698 0.91391 0.83739 0.94595 1.20634 0.99576 0.92230 1.14466 1.20411 0.92323 0.96768 0.87253 1.17980 0.92170 0.90727 1.09609 1.21722 0.97086 0.91383 0.97540 1.22140 1.01934 0.99031 0.97604 1.16789 0.86602 0.86246 0.86395 1.90708 1.65792 1.18953 1.72383 1.42096 1.37146 1.08621 1.29768 1.19775 1.17608 0.95418 1.09132 0.87611 1.25383 0.98881 0.94664 0.99220 1.69590 1.43446 0.99258 1.40613 0.85880 0.80199 0.77674 0.80320 1.19751 1.20824 1.19750 1.18675 0.81660 0.92537 0.94954 1.86018 1.15704 1.32002 1.88582 1.22996 0.96482 0.85955 1.01262 1.19996 0.92366 0.96845 1.18588 0.92741 0.92417 0.88782 0.86082 0.85809 0.86262 0.86815 0.77399 0.91485 0.92779 0.88650 0.92910 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.80 101.05 0.99 1.33 16 2 O -0.32 -5.00 10.48 -18.94 -0.20 -5.19 16 3 C 0.16 2.81 6.69 -39.03 -0.26 2.55 16 4 C -0.25 -4.51 8.96 -39.84 -0.36 -4.86 16 5 C 0.05 1.01 6.60 -39.51 -0.26 0.75 16 6 C -0.10 -2.03 4.45 -104.91 -0.47 -2.49 16 7 C -0.06 -1.01 9.35 -37.22 -0.35 -1.36 16 8 C -0.19 -3.66 9.71 -39.34 -0.38 -4.05 16 9 C 0.45 10.87 6.63 -14.98 -0.10 10.77 16 10 O -0.59 -15.74 11.63 5.09 0.06 -15.68 16 11 N -0.54 -13.90 5.27 -13.60 -0.07 -13.97 16 12 C -0.29 -7.96 9.68 -15.03 -0.15 -8.11 16 13 H 0.11 3.05 7.15 -52.49 -0.38 2.67 16 14 C 0.02 0.57 5.50 -17.44 -0.10 0.48 16 15 N -0.89 -23.81 13.05 55.50 0.72 -23.09 16 16 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 C 0.17 3.04 6.71 -38.64 -0.26 2.78 16 21 O -0.31 -5.02 9.95 -18.77 -0.19 -5.21 16 22 C 0.03 0.32 9.81 101.05 0.99 1.31 16 23 C -0.26 -4.42 8.97 -39.33 -0.35 -4.78 16 24 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 25 H 0.06 0.68 7.65 -51.93 -0.40 0.28 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.12 1.92 6.26 -52.49 -0.33 1.59 16 28 H 0.12 2.51 7.15 -52.48 -0.38 2.13 16 29 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 30 H 0.11 1.91 8.06 -52.48 -0.42 1.49 16 31 H 0.39 9.63 7.85 -40.82 -0.32 9.31 16 32 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.05 0.60 7.68 -51.93 -0.40 0.20 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 36 H 0.13 1.86 6.31 -52.49 -0.33 1.53 16 LS Contribution 310.15 15.07 4.67 4.67 Total: -1.00 -31.89 310.15 -5.22 -37.11 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -4.15 Total: 11.36 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.05 Total: -5.68 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.65 Total: -37.06 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.33 Total: -26.08 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.89 -5.22 -37.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491364394.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.827 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds