Wall clock time and date at job start Mon Mar 30 2020 02:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35744 * 116.99498 * 2 1 4 4 C 1.39189 * 119.83945 * 359.97438 * 3 2 1 5 5 C 1.36539 * 120.38983 * 179.97438 * 4 3 2 6 6 C 1.40068 * 120.06013 * 359.97438 * 5 4 3 7 7 C 1.46683 * 120.16333 * 180.02562 * 6 5 4 8 8 C 1.35317 * 119.99785 * 314.63815 * 7 6 5 9 9 C 1.41604 * 120.00189 * 349.36858 * 8 7 6 10 10 O 1.21807 * 120.00185 * 353.16553 * 9 8 7 11 11 N 1.34779 * 120.00387 * 173.16509 * 9 8 7 12 12 C 1.36780 * 120.00078 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00078 * 0.02562 * 12 11 9 14 14 C 1.39073 * 119.99808 * 180.02562 * 12 11 9 15 15 N 1.31362 * 119.99882 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99742 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47335 * 60.00032 * 16 14 12 18 18 H 1.48505 * 109.46851 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47259 * 299.99958 * 16 14 12 20 20 C 1.40592 * 119.67904 * 0.29388 * 6 5 4 21 21 O 1.35688 * 120.19669 * 179.70631 * 20 6 5 22 22 C 1.42894 * 117.00319 * 179.97438 * 21 20 6 23 23 C 1.38398 * 119.61152 * 359.44824 * 20 6 5 24 24 H 1.08989 * 109.47476 * 299.99888 * 1 2 3 25 25 H 1.09004 * 109.46707 * 60.00614 * 1 2 3 26 26 H 1.08999 * 109.46604 * 179.97438 * 1 2 3 27 27 H 1.07993 * 119.80082 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.96808 * 179.97438 * 5 4 3 29 29 H 1.08006 * 120.00315 * 134.63503 * 7 6 5 30 30 H 1.08004 * 119.99849 * 169.64011 * 8 7 6 31 31 H 0.96998 * 119.99767 * 0.02562 * 11 9 8 32 32 H 0.97000 * 119.99444 * 179.97438 * 15 14 12 33 33 H 1.09002 * 109.47150 * 59.99810 * 22 21 20 34 34 H 1.09000 * 109.47444 * 179.97438 * 22 21 20 35 35 H 1.08993 * 109.47205 * 299.99653 * 22 21 20 36 36 H 1.07998 * 120.03232 * 180.27263 * 23 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2837 2.3747 -0.0005 5 6 1.8918 3.5972 0.0000 6 6 3.2897 3.6855 0.0016 7 6 3.9453 4.9977 0.0027 8 6 3.5120 5.9712 -0.8314 9 6 2.5847 5.6643 -1.8566 10 8 2.2719 4.5062 -2.0683 11 7 2.0481 6.6535 -2.5983 12 6 1.1528 6.3569 -3.5889 13 1 0.8755 5.3301 -3.7765 14 6 0.5995 7.3776 -4.3545 15 7 0.9372 8.6264 -4.1266 16 14 -0.6237 6.9726 -5.7069 17 1 -1.8020 6.2859 -5.1193 18 1 -1.0612 8.2270 -6.3705 19 1 0.0201 6.0830 -6.7065 20 6 4.0615 2.5104 -0.0036 21 8 5.4164 2.5838 -0.0081 22 6 6.1330 1.3475 -0.0126 23 6 3.4312 1.2783 0.0014 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 0.2057 2.3113 -0.0014 28 1 1.2943 4.4969 -0.0009 29 1 4.7738 5.1869 0.6693 30 1 3.8768 6.9814 -0.7179 31 1 2.2974 7.5756 -2.4300 32 1 0.5516 9.3383 -4.6609 33 1 5.8676 0.7770 -0.9027 34 1 7.2043 1.5486 -0.0164 35 1 5.8738 0.7740 0.8773 36 1 4.0174 0.3713 0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491364394.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:48 Heat of formation + Delta-G solvation = -74.586159 kcal Electronic energy + Delta-G solvation = -21195.135872 eV Core-core repulsion = 17838.450137 eV Total energy + Delta-G solvation = -3356.685735 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.51619 -40.27844 -39.84257 -37.54539 -35.98224 -34.12694 -33.28771 -31.43635 -30.38835 -28.15927 -28.02412 -27.04704 -24.54057 -22.92768 -22.43155 -20.38481 -19.75365 -19.36597 -18.17414 -17.62008 -17.07359 -16.85069 -16.71694 -16.38227 -16.06636 -15.75242 -15.59950 -15.32558 -14.62654 -14.50267 -14.08332 -13.86709 -13.44805 -13.38217 -13.12074 -12.95233 -12.79712 -12.44648 -12.39471 -12.20675 -12.13077 -11.88469 -11.61661 -11.47449 -10.38018 -10.20681 -10.00983 -9.31724 -8.53316 -8.45939 -5.90878 -0.06179 0.58937 0.99822 1.39909 1.44668 1.51139 2.20584 2.29029 2.50701 2.59749 2.91291 3.37540 3.50641 3.86395 3.97420 4.12073 4.30328 4.30759 4.37539 4.43200 4.45099 4.50824 4.64793 4.70402 4.73688 4.76601 4.82160 5.11717 5.27160 5.36944 5.42619 5.53701 5.63658 5.78117 6.08261 6.31637 6.53842 6.62014 7.13172 7.57898 8.18790 8.66621 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017772 B = 0.005111 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.157336 B = 5476.955226 C = 6544.083313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.328 6.328 3 C 0.162 3.838 4 C -0.262 4.262 5 C 0.036 3.964 6 C -0.142 4.142 7 C -0.019 4.019 8 C -0.215 4.215 9 C 0.455 3.545 10 O -0.617 6.617 11 N -0.560 5.560 12 C -0.325 4.325 13 H 0.081 0.919 14 C -0.013 4.013 15 N -0.915 5.915 16 Si 0.994 3.006 17 H -0.270 1.270 18 H -0.269 1.269 19 H -0.273 1.273 20 C 0.171 3.829 21 O -0.322 6.322 22 C 0.018 3.982 23 C -0.265 4.265 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.105 0.895 29 H 0.157 0.843 30 H 0.144 0.856 31 H 0.394 0.606 32 H 0.279 0.721 33 H 0.055 0.945 34 H 0.125 0.875 35 H 0.070 0.930 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -12.080 10.473 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.241 6.241 3 C 0.117 3.883 4 C -0.281 4.281 5 C 0.017 3.983 6 C -0.143 4.143 7 C -0.040 4.040 8 C -0.236 4.236 9 C 0.248 3.752 10 O -0.507 6.507 11 N -0.194 5.194 12 C -0.455 4.455 13 H 0.099 0.901 14 C -0.214 4.214 15 N -0.555 5.555 16 Si 0.817 3.183 17 H -0.195 1.195 18 H -0.194 1.194 19 H -0.199 1.199 20 C 0.124 3.876 21 O -0.235 6.235 22 C -0.076 4.076 23 C -0.284 4.284 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.146 0.854 27 H 0.152 0.848 28 H 0.123 0.877 29 H 0.174 0.826 30 H 0.161 0.839 31 H 0.228 0.772 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.143 0.857 35 H 0.089 0.911 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.404 -12.641 10.199 16.829 hybrid contribution -0.811 0.604 -0.915 1.363 sum 3.593 -12.037 9.284 15.621 Atomic orbital electron populations 1.23332 0.76531 1.05607 1.01970 1.85941 1.23405 1.26506 1.88269 1.18860 0.91840 0.84199 0.93451 1.20823 1.00552 0.92131 1.14592 1.20375 0.92782 0.96794 0.88350 1.18259 0.92473 0.92026 1.11585 1.22196 0.95957 0.90148 0.95721 1.22112 1.02504 1.01164 0.97783 1.17517 0.85865 0.85545 0.86292 1.90686 1.66551 1.20178 1.73297 1.42074 1.38066 1.08882 1.30424 1.19667 1.19882 0.94737 1.11241 0.90060 1.26111 1.00092 0.94372 1.00809 1.69652 1.44471 0.99772 1.41607 0.84979 0.77947 0.77828 0.77544 1.19493 1.19357 1.19852 1.18730 0.82721 0.92303 0.93811 1.85993 1.14609 1.34807 1.88126 1.23373 0.97528 0.84588 1.02159 1.20316 0.92590 0.97557 1.17913 0.91524 0.93100 0.85410 0.84760 0.87664 0.82582 0.83871 0.77181 0.91105 0.92663 0.85718 0.91145 0.83067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.80 113.37 1.11 1.53 16 2 O -0.33 -9.51 10.48 -90.68 -0.95 -10.46 16 3 C 0.16 5.48 6.69 22.63 0.15 5.63 16 4 C -0.26 -9.45 8.96 22.10 0.20 -9.25 16 5 C 0.04 1.44 6.60 22.32 0.15 1.58 16 6 C -0.14 -5.48 4.45 -20.05 -0.09 -5.57 16 7 C -0.02 -0.67 9.35 23.80 0.22 -0.45 16 8 C -0.21 -8.39 9.71 22.43 0.22 -8.17 16 9 C 0.46 22.65 6.63 85.07 0.56 23.22 16 10 O -0.62 -33.99 11.63 -4.69 -0.05 -34.04 16 11 N -0.56 -29.70 5.27 -315.13 -1.66 -31.36 16 12 C -0.33 -18.64 9.68 84.12 0.81 -17.82 16 13 H 0.08 4.94 7.15 -2.91 -0.02 4.92 16 14 C -0.01 -0.72 5.50 84.96 0.47 -0.25 16 15 N -0.91 -49.77 13.05 21.69 0.28 -49.49 16 16 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 C 0.17 5.93 6.71 22.88 0.15 6.09 16 21 O -0.32 -9.63 9.95 -90.07 -0.90 -10.52 16 22 C 0.02 0.34 9.81 113.37 1.11 1.45 16 23 C -0.26 -8.58 8.97 22.43 0.20 -8.38 16 24 H 0.07 1.24 7.65 -2.39 -0.02 1.22 16 25 H 0.05 1.14 7.65 -2.38 -0.02 1.12 16 26 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.13 4.28 6.26 -2.91 -0.02 4.27 16 28 H 0.11 4.49 7.15 -2.91 -0.02 4.47 16 29 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 30 H 0.14 4.66 8.06 -2.91 -0.02 4.63 16 31 H 0.39 20.04 7.85 -92.71 -0.73 19.32 16 32 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 33 H 0.05 1.07 7.68 -2.39 -0.02 1.05 16 34 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.13 7.65 -2.39 -0.02 1.12 16 36 H 0.15 4.02 6.31 -2.91 -0.02 4.00 16 Total: -1.00 -70.43 310.15 4.41 -66.02 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: 0.39 Total: 35.17 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 5.27 Total: -10.39 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -1.38 Total: -80.85 kcal Atomic # 8 Polarization: -53.13 SS G_CDS: -1.90 Total: -55.03 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -70.43 4.41 -66.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491364394.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.564 kcal (2) G-P(sol) polarization free energy of solvation -70.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds