Wall clock time and date at job start Mon Mar 30 2020 02:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35977 * 117.00187 * 2 1 4 4 C 1.39012 * 119.89457 * 0.02562 * 3 2 1 5 5 C 1.38116 * 120.38623 * 179.97438 * 4 3 2 6 6 C 1.38568 * 120.17310 * 0.02562 * 5 4 3 7 7 O 1.35767 * 120.10462 * 179.97438 * 6 5 4 8 8 C 1.42896 * 117.00243 * 0.02562 * 7 6 5 9 9 C 1.40389 * 119.78451 * 359.70757 * 6 5 4 10 10 C 1.46896 * 120.18730 * 180.29881 * 9 6 5 11 11 C 1.35157 * 119.99496 * 225.41476 * 10 9 6 12 12 C 1.41776 * 120.00566 * 9.78564 * 11 10 9 13 13 O 1.21784 * 119.99892 * 7.05945 * 12 11 10 14 14 N 1.34777 * 120.00369 * 187.06148 * 12 11 10 15 15 C 1.36749 * 120.00307 * 180.02562 * 14 12 11 16 16 H 1.07999 * 119.99560 * 0.02562 * 15 14 12 17 17 C 1.39088 * 120.00355 * 179.97438 * 15 14 12 18 18 N 1.31348 * 119.99750 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00373 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46818 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47325 * 119.99991 * 19 17 15 22 22 H 1.48497 * 109.46982 * 240.00423 * 19 17 15 23 23 C 1.38187 * 119.89838 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.46659 * 59.99520 * 1 2 3 25 25 H 1.08996 * 109.47328 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47010 * 299.99996 * 1 2 3 27 27 H 1.07999 * 119.80795 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.91726 * 180.02562 * 5 4 3 29 29 H 1.09005 * 109.47137 * 179.97438 * 8 7 6 30 30 H 1.08997 * 109.47115 * 299.99741 * 8 7 6 31 31 H 1.08997 * 109.47366 * 59.99909 * 8 7 6 32 32 H 1.07994 * 119.99785 * 45.41492 * 10 9 6 33 33 H 1.08008 * 119.99700 * 189.78783 * 11 10 9 34 34 H 0.96999 * 119.99743 * 359.97438 * 14 12 11 35 35 H 0.97001 * 119.99780 * 179.97438 * 18 17 15 36 36 H 1.08004 * 120.08247 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2115 0.0000 4 6 1.2872 2.3760 0.0005 5 6 1.9037 3.6120 0.0011 6 6 3.2866 3.7005 0.0005 7 8 3.8911 4.9161 0.0006 8 6 3.0400 6.0640 0.0017 9 6 4.0604 2.5291 0.0057 10 6 5.5269 2.6127 0.0118 11 6 6.2518 1.8294 -0.8176 12 6 5.6040 1.0825 -1.8338 13 8 4.4152 1.2433 -2.0437 14 7 6.3038 0.1946 -2.5675 15 6 5.6792 -0.5254 -3.5480 16 1 4.6251 -0.3822 -3.7346 17 6 6.4014 -1.4414 -4.3055 18 7 7.6837 -1.6144 -4.0795 19 14 5.5483 -2.4244 -5.6454 20 1 4.1133 -2.0461 -5.6993 21 1 6.1866 -2.1348 -6.9546 22 1 5.6665 -3.8743 -5.3470 23 6 3.4266 1.2814 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2090 2.3139 0.0014 28 1 1.3065 4.5118 0.0019 29 1 3.6491 6.9680 0.0020 30 1 2.4102 6.0502 -0.8878 31 1 2.4116 6.0495 0.8921 32 1 6.0258 3.2999 0.6790 33 1 7.3246 1.7725 -0.7062 34 1 7.2508 0.0668 -2.4005 35 1 8.1873 -2.2535 -4.6076 36 1 4.0145 0.3754 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491419998.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:15 Heat of formation + Delta-G solvation = -50.122661 kcal Electronic energy + Delta-G solvation = -21309.949146 eV Core-core repulsion = 17954.324228 eV Total energy + Delta-G solvation = -3355.624918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.06266 -38.56104 -38.38976 -35.93886 -34.17705 -32.69416 -31.34764 -29.81158 -29.06154 -27.07039 -26.57252 -25.37631 -23.11595 -21.51550 -20.84127 -18.65065 -18.01327 -17.46448 -17.06902 -16.40987 -15.76341 -15.50962 -15.21003 -14.62400 -14.43681 -14.22702 -13.96040 -13.54158 -13.00707 -12.86149 -12.74752 -12.47628 -12.12921 -11.97505 -11.63199 -11.56289 -11.31858 -11.17895 -11.12006 -10.40471 -10.34796 -10.27459 -10.08801 -9.60273 -9.29645 -8.42172 -8.02777 -7.31782 -7.17395 -6.53754 -3.80625 1.32112 2.04646 2.45247 3.17641 3.23420 3.31524 3.56974 3.78479 4.13772 4.32197 4.47199 5.04067 5.14378 5.21073 5.26281 5.28332 5.31241 5.36396 5.37116 5.52355 5.55856 5.64028 5.76301 5.95674 5.98234 6.25358 6.36557 6.59652 6.65331 6.80613 6.95326 6.99730 7.27651 7.45916 7.69128 7.96255 8.05498 8.59094 9.13798 9.51168 10.12327 10.62895 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017137 B = 0.005469 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.506157 B = 5118.712100 C = 6188.553022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.317 6.317 3 C 0.076 3.924 4 C -0.169 4.169 5 C -0.191 4.191 6 C 0.099 3.901 7 O -0.315 6.315 8 C 0.031 3.969 9 C -0.032 4.032 10 C -0.069 4.069 11 C -0.172 4.172 12 C 0.443 3.557 13 O -0.587 6.587 14 N -0.541 5.541 15 C -0.285 4.285 16 H 0.108 0.892 17 C 0.021 3.979 18 N -0.888 5.888 19 Si 0.932 3.068 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.012 4.012 24 H 0.049 0.951 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.392 0.608 35 H 0.274 0.726 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.679 8.692 9.423 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.231 6.231 3 C 0.031 3.969 4 C -0.188 4.188 5 C -0.210 4.210 6 C 0.055 3.945 7 O -0.228 6.228 8 C -0.065 4.065 9 C -0.033 4.033 10 C -0.091 4.091 11 C -0.193 4.193 12 C 0.235 3.765 13 O -0.475 6.475 14 N -0.173 5.173 15 C -0.415 4.415 16 H 0.126 0.874 17 C -0.182 4.182 18 N -0.527 5.527 19 Si 0.758 3.242 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.031 4.031 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.066 0.934 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.134 0.866 34 H 0.226 0.774 35 H 0.084 0.916 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.998 8.473 9.127 15.364 hybrid contribution -0.201 -0.310 -0.845 0.923 sum -9.199 8.163 8.281 14.827 Atomic orbital electron populations 1.22906 0.79704 1.03149 1.00577 1.86100 1.20206 1.27053 1.89774 1.18631 0.92143 0.83788 1.02292 1.20842 0.99047 0.91837 1.07052 1.20625 0.92961 0.97724 1.09643 1.18907 0.90675 0.84389 1.00554 1.85999 1.35302 1.12185 1.89364 1.22935 0.95566 0.87128 1.00842 1.17794 0.92792 0.89367 1.03346 1.21727 0.91341 0.97591 0.98441 1.22201 0.99752 1.00052 0.97326 1.16824 0.88035 0.85098 0.86590 1.90730 1.14865 1.70064 1.71869 1.42111 1.11725 1.33281 1.30230 1.19903 0.96453 1.15676 1.09479 0.87404 1.25401 0.95530 0.98049 0.99247 1.69600 1.06991 1.35448 1.40704 0.85755 0.79655 0.78979 0.79777 1.19010 1.20600 1.20547 1.20161 0.90717 0.96855 0.95386 0.93194 0.88891 0.93435 0.86255 0.86143 0.88827 0.93097 0.93245 0.85811 0.86580 0.77403 0.91556 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.32 -5.81 10.49 -19.67 -0.21 -6.01 16 3 C 0.08 1.45 6.67 -39.31 -0.26 1.19 16 4 C -0.17 -2.79 9.03 -39.34 -0.36 -3.14 16 5 C -0.19 -3.07 9.02 -39.50 -0.36 -3.42 16 6 C 0.10 1.79 6.70 -38.65 -0.26 1.53 16 7 O -0.31 -5.06 9.95 -19.01 -0.19 -5.25 16 8 C 0.03 0.34 9.81 101.05 0.99 1.33 16 9 C -0.03 -0.63 4.48 -104.94 -0.47 -1.10 16 10 C -0.07 -1.27 9.35 -37.18 -0.35 -1.61 16 11 C -0.17 -3.41 9.73 -39.33 -0.38 -3.79 16 12 C 0.44 10.89 6.63 -14.91 -0.10 10.79 16 13 O -0.59 -15.97 11.53 5.11 0.06 -15.91 16 14 N -0.54 -13.98 5.26 -13.57 -0.07 -14.06 16 15 C -0.28 -7.95 9.68 -15.04 -0.15 -8.09 16 16 H 0.11 3.18 7.15 -52.49 -0.38 2.80 16 17 C 0.02 0.56 5.50 -17.44 -0.10 0.46 16 18 N -0.89 -23.92 13.05 55.50 0.72 -23.20 16 19 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 C -0.01 -0.25 6.55 -38.96 -0.25 -0.51 16 24 H 0.05 0.60 7.65 -51.93 -0.40 0.21 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.50 7.65 -51.93 -0.40 0.11 16 27 H 0.12 1.60 6.27 -52.49 -0.33 1.27 16 28 H 0.12 1.55 6.29 -52.49 -0.33 1.22 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 31 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 32 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.12 1.94 8.06 -52.48 -0.42 1.52 16 34 H 0.39 9.69 7.85 -40.82 -0.32 9.37 16 35 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.13 2.90 7.09 -52.48 -0.37 2.53 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -32.54 310.09 -5.22 -37.76 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -4.14 Total: 11.05 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.05 Total: -4.97 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.65 Total: -37.26 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.34 Total: -27.17 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.54 -5.22 -37.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491419998.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.359 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds