Wall clock time and date at job start Mon Mar 30 2020 02:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35977 * 117.00187 * 2 1 4 4 C 1.39012 * 119.89457 * 0.02562 * 3 2 1 5 5 C 1.38116 * 120.38623 * 179.97438 * 4 3 2 6 6 C 1.38568 * 120.17310 * 0.02562 * 5 4 3 7 7 O 1.35767 * 120.10462 * 179.97438 * 6 5 4 8 8 C 1.42896 * 117.00243 * 0.02562 * 7 6 5 9 9 C 1.40389 * 119.78451 * 359.70757 * 6 5 4 10 10 C 1.46896 * 120.18730 * 180.29881 * 9 6 5 11 11 C 1.35157 * 119.99496 * 225.41476 * 10 9 6 12 12 C 1.41776 * 120.00566 * 9.78564 * 11 10 9 13 13 O 1.21784 * 119.99892 * 7.05945 * 12 11 10 14 14 N 1.34777 * 120.00369 * 187.06148 * 12 11 10 15 15 C 1.36749 * 120.00307 * 180.02562 * 14 12 11 16 16 H 1.07999 * 119.99560 * 0.02562 * 15 14 12 17 17 C 1.39088 * 120.00355 * 179.97438 * 15 14 12 18 18 N 1.31348 * 119.99750 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00373 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46818 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47325 * 119.99991 * 19 17 15 22 22 H 1.48497 * 109.46982 * 240.00423 * 19 17 15 23 23 C 1.38187 * 119.89838 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.46659 * 59.99520 * 1 2 3 25 25 H 1.08996 * 109.47328 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47010 * 299.99996 * 1 2 3 27 27 H 1.07999 * 119.80795 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.91726 * 180.02562 * 5 4 3 29 29 H 1.09005 * 109.47137 * 179.97438 * 8 7 6 30 30 H 1.08997 * 109.47115 * 299.99741 * 8 7 6 31 31 H 1.08997 * 109.47366 * 59.99909 * 8 7 6 32 32 H 1.07994 * 119.99785 * 45.41492 * 10 9 6 33 33 H 1.08008 * 119.99700 * 189.78783 * 11 10 9 34 34 H 0.96999 * 119.99743 * 359.97438 * 14 12 11 35 35 H 0.97001 * 119.99780 * 179.97438 * 18 17 15 36 36 H 1.08004 * 120.08247 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2115 0.0000 4 6 1.2872 2.3760 0.0005 5 6 1.9037 3.6120 0.0011 6 6 3.2866 3.7005 0.0005 7 8 3.8911 4.9161 0.0006 8 6 3.0400 6.0640 0.0017 9 6 4.0604 2.5291 0.0057 10 6 5.5269 2.6127 0.0118 11 6 6.2518 1.8294 -0.8176 12 6 5.6040 1.0825 -1.8338 13 8 4.4152 1.2433 -2.0437 14 7 6.3038 0.1946 -2.5675 15 6 5.6792 -0.5254 -3.5480 16 1 4.6251 -0.3822 -3.7346 17 6 6.4014 -1.4414 -4.3055 18 7 7.6837 -1.6144 -4.0795 19 14 5.5483 -2.4244 -5.6454 20 1 4.1133 -2.0461 -5.6993 21 1 6.1866 -2.1348 -6.9546 22 1 5.6665 -3.8743 -5.3470 23 6 3.4266 1.2814 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2090 2.3139 0.0014 28 1 1.3065 4.5118 0.0019 29 1 3.6491 6.9680 0.0020 30 1 2.4102 6.0502 -0.8878 31 1 2.4116 6.0495 0.8921 32 1 6.0258 3.2999 0.6790 33 1 7.3246 1.7725 -0.7062 34 1 7.2508 0.0668 -2.4005 35 1 8.1873 -2.2535 -4.6076 36 1 4.0145 0.3754 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491419998.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:15 Heat of formation + Delta-G solvation = -73.007232 kcal Electronic energy + Delta-G solvation = -21310.941496 eV Core-core repulsion = 17954.324228 eV Total energy + Delta-G solvation = -3356.617267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.44300 -40.20983 -39.79431 -37.34024 -36.03217 -34.31803 -33.33321 -31.21557 -30.37853 -28.15984 -27.67119 -27.24953 -24.70783 -22.89705 -22.38885 -20.43173 -19.71668 -18.97867 -18.47353 -17.75375 -17.37663 -16.70299 -16.48738 -16.34034 -15.90857 -15.64096 -15.55250 -15.15434 -14.62938 -14.51844 -14.14419 -13.62015 -13.54384 -13.40603 -13.30716 -12.95939 -12.80565 -12.43173 -12.38150 -12.34691 -12.13376 -11.65787 -11.51357 -11.31804 -10.78956 -10.25754 -10.01335 -8.96049 -8.53849 -8.51218 -5.91995 -0.15787 0.65306 0.96164 1.38930 1.40821 1.53859 2.28467 2.40670 2.55839 2.62957 2.91917 3.35942 3.46943 3.81875 3.87488 4.17284 4.32686 4.34620 4.41307 4.41990 4.47550 4.50528 4.61662 4.69162 4.72553 4.78683 4.94967 5.18850 5.19522 5.35932 5.38115 5.48041 5.51805 5.79278 6.06024 6.46707 6.60037 6.67857 7.11913 7.55594 8.17209 8.65204 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017137 B = 0.005469 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.506157 B = 5118.712100 C = 6188.553022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.349 6.349 3 C 0.057 3.943 4 C -0.160 4.160 5 C -0.185 4.185 6 C 0.098 3.902 7 O -0.330 6.330 8 C 0.019 3.981 9 C -0.068 4.068 10 C -0.032 4.032 11 C -0.202 4.202 12 C 0.450 3.550 13 O -0.615 6.615 14 N -0.559 5.559 15 C -0.323 4.323 16 H 0.079 0.921 17 C -0.013 4.013 18 N -0.914 5.914 19 Si 0.994 3.006 20 H -0.275 1.275 21 H -0.268 1.268 22 H -0.269 1.269 23 C -0.040 4.040 24 H 0.055 0.945 25 H 0.113 0.887 26 H 0.072 0.928 27 H 0.155 0.845 28 H 0.161 0.839 29 H 0.119 0.881 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.164 0.836 33 H 0.148 0.852 34 H 0.395 0.605 35 H 0.280 0.720 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.220 10.759 10.259 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.264 6.264 3 C 0.012 3.988 4 C -0.179 4.179 5 C -0.203 4.203 6 C 0.053 3.947 7 O -0.244 6.244 8 C -0.075 4.075 9 C -0.069 4.069 10 C -0.053 4.053 11 C -0.223 4.223 12 C 0.242 3.758 13 O -0.505 6.505 14 N -0.193 5.193 15 C -0.453 4.453 16 H 0.097 0.903 17 C -0.214 4.214 18 N -0.554 5.554 19 Si 0.818 3.182 20 H -0.199 1.199 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.060 4.060 24 H 0.074 0.926 25 H 0.131 0.869 26 H 0.091 0.909 27 H 0.173 0.827 28 H 0.178 0.822 29 H 0.138 0.862 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.181 0.819 33 H 0.166 0.834 34 H 0.229 0.771 35 H 0.090 0.910 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.542 10.566 9.987 17.958 hybrid contribution 0.052 -0.703 -0.880 1.128 sum -10.489 9.863 9.107 17.036 Atomic orbital electron populations 1.23263 0.76885 1.05125 1.01992 1.86058 1.23272 1.27232 1.89868 1.18848 0.91982 0.85157 1.02773 1.21254 1.00737 0.90936 1.04963 1.21108 0.92641 0.99041 1.07519 1.18996 0.91355 0.84713 0.99649 1.85972 1.36936 1.12473 1.89001 1.23330 0.96185 0.85964 1.02070 1.18063 0.93746 0.90019 1.05088 1.22264 0.91127 0.95441 0.96505 1.22191 1.01402 1.01126 0.97565 1.17603 0.87672 0.84054 0.86446 1.90707 1.16384 1.70636 1.72749 1.42066 1.11790 1.34446 1.30977 1.19718 0.95617 1.18182 1.11829 0.90311 1.26122 0.96176 0.98323 1.00766 1.69653 1.07757 1.36234 1.41747 0.84855 0.78025 0.77880 0.77482 1.19932 1.19303 1.19365 1.20056 0.91826 0.96299 0.97801 0.92603 0.86918 0.90924 0.82717 0.82178 0.86244 0.92585 0.91113 0.81915 0.83432 0.77130 0.91041 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.81 113.37 1.11 1.63 16 2 O -0.35 -12.96 10.49 -93.29 -0.98 -13.94 16 3 C 0.06 2.19 6.67 22.44 0.15 2.34 16 4 C -0.16 -4.92 9.03 22.43 0.20 -4.72 16 5 C -0.18 -5.35 9.02 22.32 0.20 -5.14 16 6 C 0.10 3.32 6.70 22.87 0.15 3.48 16 7 O -0.33 -9.59 9.95 -90.94 -0.90 -10.50 16 8 C 0.02 0.33 9.81 113.37 1.11 1.45 16 9 C -0.07 -2.69 4.48 -20.07 -0.09 -2.78 16 10 C -0.03 -1.16 9.35 23.83 0.22 -0.93 16 11 C -0.20 -8.08 9.73 22.43 0.22 -7.86 16 12 C 0.45 23.09 6.63 85.12 0.56 23.65 16 13 O -0.62 -35.10 11.53 -4.62 -0.05 -35.16 16 14 N -0.56 -30.39 5.26 -315.01 -1.66 -32.05 16 15 C -0.32 -19.05 9.68 84.13 0.81 -18.23 16 16 H 0.08 4.97 7.15 -2.91 -0.02 4.95 16 17 C -0.01 -0.73 5.50 84.97 0.47 -0.27 16 18 N -0.91 -50.44 13.05 21.69 0.28 -50.16 16 19 Si 0.99 44.03 29.55 68.60 2.03 46.06 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 23 C -0.04 -1.75 6.55 22.67 0.15 -1.61 16 24 H 0.06 1.24 7.65 -2.38 -0.02 1.22 16 25 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.07 1.34 7.65 -2.39 -0.02 1.32 16 27 H 0.16 3.54 6.27 -2.91 -0.02 3.52 16 28 H 0.16 3.29 6.29 -2.91 -0.02 3.27 16 29 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 31 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 32 H 0.16 4.48 8.06 -2.91 -0.02 4.45 16 33 H 0.15 4.85 8.06 -2.91 -0.02 4.83 16 34 H 0.39 20.47 7.85 -92.71 -0.73 19.74 16 35 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 36 H 0.10 4.66 7.09 -2.91 -0.02 4.64 16 Total: -1.00 -74.89 310.09 4.38 -70.51 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.39 Total: 34.22 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 5.28 Total: -8.99 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -1.38 Total: -82.21 kcal Atomic # 8 Polarization: -57.66 SS G_CDS: -1.94 Total: -59.60 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -74.89 4.38 -70.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491419998.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.493 kcal (2) G-P(sol) polarization free energy of solvation -74.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds