Wall clock time and date at job start Mon Mar 30 2020 01:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.49770 * 2 1 4 4 C 1.53192 * 109.49867 * 120.06960 * 2 1 3 5 5 N 1.46934 * 108.77093 * 174.61704 * 4 2 1 6 6 S 1.65600 * 120.62592 * 126.37133 * 5 4 2 7 7 O 1.42100 * 104.27676 * 333.92501 * 6 5 4 8 8 O 1.42105 * 104.27199 * 206.06731 * 6 5 4 9 9 C 1.81394 * 104.45039 * 89.99879 * 6 5 4 10 10 C 1.52997 * 109.47321 * 179.97438 * 9 6 5 11 11 C 1.50694 * 109.47460 * 179.97438 * 10 9 6 12 12 H 1.08002 * 120.00179 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00472 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99350 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47339 * 179.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 300.00306 * 15 13 11 18 18 H 1.48504 * 109.46636 * 59.99865 * 15 13 11 19 19 C 1.46921 * 118.73752 * 306.63865 * 5 4 2 20 20 C 1.52767 * 109.00802 * 53.31452 * 19 5 4 21 21 C 1.53033 * 109.38292 * 305.58562 * 20 19 5 22 22 H 1.09001 * 109.46173 * 181.26111 * 21 20 19 23 23 O 1.42901 * 109.46092 * 301.21787 * 21 20 19 24 24 H 1.09004 * 109.46861 * 299.92813 * 1 2 3 25 25 H 1.08997 * 109.47547 * 59.93038 * 1 2 3 26 26 H 1.09002 * 109.47198 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.58581 * 54.83105 * 4 2 1 28 28 H 1.08999 * 109.58667 * 294.40232 * 4 2 1 29 29 H 1.09003 * 109.47694 * 59.99442 * 9 6 5 30 30 H 1.08999 * 109.47482 * 299.99637 * 9 6 5 31 31 H 1.09005 * 109.46800 * 60.00342 * 10 9 6 32 32 H 1.08998 * 109.47382 * 300.00141 * 10 9 6 33 33 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 34 34 H 1.09006 * 109.58556 * 173.14305 * 19 5 4 35 35 H 1.08992 * 109.59246 * 293.57330 * 19 5 4 36 36 H 1.08999 * 109.56603 * 185.54430 * 20 19 5 37 37 H 1.09007 * 109.38316 * 65.51055 * 20 19 5 38 38 H 0.96698 * 113.99669 * 300.06998 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7235 1.2497 5 7 3.5048 -0.8282 1.1699 6 16 4.4583 -0.2827 2.4091 7 8 3.6750 0.7225 3.0378 8 8 5.6951 0.0352 1.7856 9 6 4.6467 -1.7188 3.5012 10 6 5.5193 -1.3379 4.6988 11 6 5.6753 -2.5307 5.6064 12 1 5.1993 -3.4669 5.3545 13 6 6.4248 -2.4268 6.7589 14 7 7.0041 -1.2867 7.0659 15 14 6.6176 -3.9052 7.8844 16 1 7.4647 -3.5354 9.0466 17 1 5.2812 -4.3401 8.3637 18 1 7.2609 -5.0156 7.1370 19 6 4.1061 -1.4204 -0.0326 20 6 3.5714 -0.6941 -1.2656 21 6 2.0414 -0.7229 -1.2483 22 1 1.6587 -0.2245 -2.1389 23 8 1.5909 -2.0789 -1.2312 24 1 -0.3633 0.5127 0.8907 25 1 -0.3634 0.5149 -0.8893 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6057 -1.7216 1.2980 28 1 1.7634 -0.1578 2.1389 29 1 5.1192 -2.5334 2.9522 30 1 3.6660 -2.0389 3.8531 31 1 5.0470 -0.5233 5.2480 32 1 6.5000 -1.0181 4.3467 33 1 7.5312 -1.2134 7.8770 34 1 5.1901 -1.3143 0.0107 35 1 3.8424 -2.4763 -0.0910 36 1 3.9344 -1.1886 -2.1666 37 1 3.9160 0.3400 -1.2542 38 1 1.8784 -2.5984 -1.9944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494325479.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:45 Heat of formation + Delta-G solvation = -138.326453 kcal Electronic energy + Delta-G solvation = -20606.601940 eV Core-core repulsion = 17382.596171 eV Total energy + Delta-G solvation = -3224.005770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.44391 -36.64662 -35.69033 -35.34189 -33.86576 -33.16967 -31.18678 -31.09233 -26.72242 -25.58382 -24.40374 -22.43693 -21.49400 -20.13633 -18.46072 -17.56943 -17.09904 -16.46517 -15.92285 -15.40520 -15.20908 -14.72228 -14.55291 -14.48423 -14.10051 -13.61326 -13.34683 -12.79549 -12.52134 -12.34654 -12.16550 -11.97707 -11.74202 -11.63863 -11.55164 -11.32907 -11.11277 -11.05135 -10.96532 -10.92682 -10.41942 -10.38112 -10.35452 -10.06352 -9.72750 -9.29165 -8.68361 -8.48655 -6.10912 -4.16475 0.78886 3.05980 3.28435 3.33045 3.35101 4.06072 4.31676 4.40276 4.47577 4.53847 4.71289 4.81172 4.95277 5.05650 5.24117 5.25891 5.31073 5.43218 5.56649 5.62360 5.66224 5.71297 5.76255 5.79419 5.91976 5.96421 6.00988 6.25251 6.29670 6.52040 6.73738 7.31528 7.37799 7.46358 7.82034 8.19439 8.86716 9.48134 11.00134 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031369 B = 0.004358 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.398693 B = 6423.115696 C = 6536.507709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.085 0.915 4 C 0.127 3.873 5 N -1.006 6.006 6 S 2.590 3.410 7 O -0.965 6.965 8 O -0.966 6.966 9 C -0.589 4.589 10 C 0.028 3.972 11 C -0.521 4.521 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.891 5.891 15 Si 0.901 3.099 16 H -0.285 1.285 17 H -0.275 1.275 18 H -0.275 1.275 19 C 0.124 3.876 20 C -0.166 4.166 21 C 0.113 3.887 22 H 0.054 0.946 23 O -0.559 6.559 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.895 -0.460 -18.030 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.103 0.897 4 C 0.002 3.998 5 N -0.842 5.842 6 S 2.689 3.311 7 O -0.955 6.955 8 O -0.956 6.956 9 C -0.722 4.722 10 C -0.011 4.011 11 C -0.560 4.560 12 H 0.079 0.921 13 C -0.145 4.145 14 N -0.529 5.529 15 Si 0.728 3.272 16 H -0.211 1.211 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.002 4.002 20 C -0.205 4.205 21 C 0.054 3.946 22 H 0.072 0.928 23 O -0.365 6.365 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.111 0.889 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -10.708 0.732 -17.277 20.339 hybrid contribution 0.330 -1.560 0.177 1.604 sum -10.378 -0.828 -17.100 20.020 Atomic orbital electron populations 1.21716 0.94016 1.02647 1.01672 1.21489 0.96493 0.99327 0.94376 0.89695 1.21383 0.78970 1.01173 0.98295 1.57906 1.15993 1.78613 1.31681 1.05668 0.73353 0.77648 0.74395 1.93522 1.69914 1.55433 1.76661 1.93519 1.44240 1.83411 1.74479 1.30487 1.10191 1.17723 1.13799 1.18960 0.93727 0.98801 0.89613 1.20974 1.32179 0.96674 1.06173 0.92102 1.25067 0.95315 0.96268 0.97803 1.69950 1.32739 1.24654 1.25577 0.86521 0.78219 0.82493 0.79989 1.21067 1.20070 1.20086 1.21172 0.98299 0.97089 0.83616 1.22506 0.96742 1.02631 0.98619 1.21734 0.92371 0.83067 0.97458 0.92840 1.86530 1.77769 1.22759 1.49393 0.92299 0.92780 0.91614 0.90763 0.88947 0.86314 0.86273 0.94894 0.94907 0.92485 0.88914 0.91191 0.90665 0.90482 0.77970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.07 37.16 0.34 -0.97 16 2 C -0.10 -1.04 2.70 -90.50 -0.24 -1.29 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.13 1.63 5.48 -3.71 -0.02 1.61 16 5 N -1.01 -14.31 3.23 -113.76 -0.37 -14.68 16 6 S 2.59 47.98 5.45 -107.50 -0.59 47.39 16 7 O -0.96 -20.31 16.59 -57.54 -0.95 -21.26 16 8 O -0.97 -20.21 16.58 -57.54 -0.95 -21.16 16 9 C -0.59 -11.63 6.12 37.16 0.23 -11.41 16 10 C 0.03 0.73 4.98 -27.89 -0.14 0.59 16 11 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 15 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C 0.12 1.47 6.17 -3.93 -0.02 1.44 16 20 C -0.17 -1.57 5.79 -26.83 -0.16 -1.72 16 21 C 0.11 1.02 3.19 -26.69 -0.09 0.94 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 O -0.56 -4.90 11.43 -35.23 -0.40 -5.30 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.62 7.72 -51.93 -0.40 0.22 16 27 H 0.07 0.89 7.81 -51.93 -0.41 0.49 16 28 H 0.09 1.25 6.86 -51.93 -0.36 0.89 16 29 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 30 H 0.12 2.15 8.14 -51.92 -0.42 1.72 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.09 1.17 6.85 -51.93 -0.36 0.81 16 35 H 0.07 0.73 7.81 -51.93 -0.41 0.32 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.37 1.82 9.08 45.56 0.41 2.23 16 LS Contribution 319.09 15.07 4.81 4.81 Total: -1.00 -34.94 319.09 -8.53 -43.47 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.28 Total: 0.53 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -0.52 Total: -24.16 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.37 Total: -40.68 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -2.31 Total: -47.72 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 47.98 SS G_CDS: -0.59 Total: 47.39 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.94 -8.53 -43.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494325479.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.852 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds