Wall clock time and date at job start Mon Mar 30 2020 01:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.49770 * 2 1 4 4 C 1.53192 * 109.49867 * 120.06960 * 2 1 3 5 5 N 1.46934 * 108.77093 * 174.61704 * 4 2 1 6 6 S 1.65600 * 120.62592 * 126.37133 * 5 4 2 7 7 O 1.42100 * 104.27676 * 333.92501 * 6 5 4 8 8 O 1.42105 * 104.27199 * 206.06731 * 6 5 4 9 9 C 1.81394 * 104.45039 * 89.99879 * 6 5 4 10 10 C 1.52997 * 109.47321 * 179.97438 * 9 6 5 11 11 C 1.50694 * 109.47460 * 179.97438 * 10 9 6 12 12 H 1.08002 * 120.00179 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00472 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99350 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47339 * 179.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 300.00306 * 15 13 11 18 18 H 1.48504 * 109.46636 * 59.99865 * 15 13 11 19 19 C 1.46921 * 118.73752 * 306.63865 * 5 4 2 20 20 C 1.52767 * 109.00802 * 53.31452 * 19 5 4 21 21 C 1.53033 * 109.38292 * 305.58562 * 20 19 5 22 22 H 1.09001 * 109.46173 * 181.26111 * 21 20 19 23 23 O 1.42901 * 109.46092 * 301.21787 * 21 20 19 24 24 H 1.09004 * 109.46861 * 299.92813 * 1 2 3 25 25 H 1.08997 * 109.47547 * 59.93038 * 1 2 3 26 26 H 1.09002 * 109.47198 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.58581 * 54.83105 * 4 2 1 28 28 H 1.08999 * 109.58667 * 294.40232 * 4 2 1 29 29 H 1.09003 * 109.47694 * 59.99442 * 9 6 5 30 30 H 1.08999 * 109.47482 * 299.99637 * 9 6 5 31 31 H 1.09005 * 109.46800 * 60.00342 * 10 9 6 32 32 H 1.08998 * 109.47382 * 300.00141 * 10 9 6 33 33 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 34 34 H 1.09006 * 109.58556 * 173.14305 * 19 5 4 35 35 H 1.08992 * 109.59246 * 293.57330 * 19 5 4 36 36 H 1.08999 * 109.56603 * 185.54430 * 20 19 5 37 37 H 1.09007 * 109.38316 * 65.51055 * 20 19 5 38 38 H 0.96698 * 113.99669 * 300.06998 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7235 1.2497 5 7 3.5048 -0.8282 1.1699 6 16 4.4583 -0.2827 2.4091 7 8 3.6750 0.7225 3.0378 8 8 5.6951 0.0352 1.7856 9 6 4.6467 -1.7188 3.5012 10 6 5.5193 -1.3379 4.6988 11 6 5.6753 -2.5307 5.6064 12 1 5.1993 -3.4669 5.3545 13 6 6.4248 -2.4268 6.7589 14 7 7.0041 -1.2867 7.0659 15 14 6.6176 -3.9052 7.8844 16 1 7.4647 -3.5354 9.0466 17 1 5.2812 -4.3401 8.3637 18 1 7.2609 -5.0156 7.1370 19 6 4.1061 -1.4204 -0.0326 20 6 3.5714 -0.6941 -1.2656 21 6 2.0414 -0.7229 -1.2483 22 1 1.6587 -0.2245 -2.1389 23 8 1.5909 -2.0789 -1.2312 24 1 -0.3633 0.5127 0.8907 25 1 -0.3634 0.5149 -0.8893 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6057 -1.7216 1.2980 28 1 1.7634 -0.1578 2.1389 29 1 5.1192 -2.5334 2.9522 30 1 3.6660 -2.0389 3.8531 31 1 5.0470 -0.5233 5.2480 32 1 6.5000 -1.0181 4.3467 33 1 7.5312 -1.2134 7.8770 34 1 5.1901 -1.3143 0.0107 35 1 3.8424 -2.4763 -0.0910 36 1 3.9344 -1.1886 -2.1666 37 1 3.9160 0.3400 -1.2542 38 1 1.8784 -2.5984 -1.9944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494325479.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:44 Heat of formation + Delta-G solvation = -165.939051 kcal Electronic energy + Delta-G solvation = -20607.799313 eV Core-core repulsion = 17382.596171 eV Total energy + Delta-G solvation = -3225.203142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.26432 -38.25535 -37.05838 -36.42641 -35.90796 -34.02024 -33.14187 -32.00190 -27.65188 -27.50373 -25.40065 -23.57449 -23.15428 -21.01362 -19.80642 -19.09783 -18.38717 -17.76394 -17.28437 -16.99913 -16.54922 -16.01954 -15.83816 -15.49642 -15.11775 -14.97335 -14.49156 -14.40649 -13.75691 -13.60263 -13.48430 -13.32207 -13.21196 -12.91937 -12.84650 -12.80470 -12.71828 -12.34121 -12.25630 -12.18500 -12.01642 -11.85015 -11.71945 -11.21805 -11.14262 -10.76237 -10.65316 -9.83086 -8.27155 -6.41841 -0.72785 1.40056 1.43871 1.52165 1.73046 2.37471 2.82780 3.05872 3.15159 3.44019 3.60419 3.87459 3.95639 4.00754 4.09972 4.15085 4.21583 4.43142 4.53756 4.65138 4.72530 4.77719 4.85202 4.89343 4.92372 5.11606 5.17309 5.22501 5.24429 5.25243 5.32256 5.51467 5.66388 5.68988 6.04615 6.71242 7.04554 7.28461 8.85010 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031369 B = 0.004358 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.398693 B = 6423.115696 C = 6536.507709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 H 0.076 0.924 4 C 0.120 3.880 5 N -0.995 5.995 6 S 2.613 3.387 7 O -0.994 6.994 8 O -0.993 6.993 9 C -0.588 4.588 10 C 0.021 3.979 11 C -0.542 4.542 12 H 0.074 0.926 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.976 3.024 16 H -0.283 1.283 17 H -0.263 1.263 18 H -0.263 1.263 19 C 0.112 3.888 20 C -0.163 4.163 21 C 0.119 3.881 22 H 0.075 0.925 23 O -0.570 6.570 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.005 0.995 32 H 0.006 0.994 33 H 0.268 0.732 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.169 -2.399 -19.688 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 H 0.094 0.906 4 C -0.004 4.004 5 N -0.834 5.834 6 S 2.711 3.289 7 O -0.984 6.984 8 O -0.983 6.983 9 C -0.720 4.720 10 C -0.018 4.018 11 C -0.581 4.581 12 H 0.093 0.907 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.799 3.201 16 H -0.208 1.208 17 H -0.188 1.188 18 H -0.187 1.187 19 C -0.012 4.012 20 C -0.203 4.203 21 C 0.060 3.940 22 H 0.093 0.907 23 O -0.378 6.378 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.023 0.977 32 H 0.024 0.976 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -11.981 -1.228 -18.947 22.450 hybrid contribution 0.685 -0.945 0.603 1.314 sum -11.296 -2.173 -18.344 21.652 Atomic orbital electron populations 1.21672 0.92741 1.02747 1.02328 1.21549 0.97559 0.98911 0.94264 0.90553 1.21595 0.77677 1.02027 0.99146 1.57554 1.16355 1.78584 1.30924 1.04683 0.72882 0.76886 0.74427 1.93477 1.70474 1.56647 1.77851 1.93477 1.46093 1.83767 1.74957 1.30402 1.10001 1.19439 1.12169 1.18816 0.93433 0.97759 0.91764 1.21481 1.32193 0.97645 1.06770 0.90737 1.26134 0.94796 0.99524 0.99695 1.70101 1.33693 1.27233 1.26353 0.85340 0.78694 0.78485 0.77589 1.20805 1.18783 1.18716 1.21503 0.97822 0.98534 0.83388 1.22539 0.97237 1.01987 0.98500 1.21634 0.91748 0.83498 0.97106 0.90692 1.86489 1.77879 1.22618 1.50851 0.92598 0.91252 0.91699 0.89581 0.90298 0.84257 0.84451 0.97655 0.97556 0.92325 0.89979 0.89096 0.87435 0.91631 0.75807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.07 71.98 0.65 -1.57 16 2 C -0.10 -2.02 2.70 -10.71 -0.03 -2.05 16 3 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 4 C 0.12 2.93 5.48 86.36 0.47 3.40 16 5 N -1.00 -27.35 3.23 -513.82 -1.66 -29.01 16 6 S 2.61 98.37 5.45 -56.49 -0.31 98.06 16 7 O -0.99 -43.10 16.59 -127.65 -2.12 -45.22 16 8 O -0.99 -42.46 16.58 -127.65 -2.12 -44.58 16 9 C -0.59 -23.37 6.12 71.98 0.44 -22.93 16 10 C 0.02 1.14 4.98 29.85 0.15 1.29 16 11 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 12 H 0.07 3.90 7.74 -2.91 -0.02 3.87 16 13 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 14 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 15 Si 0.98 43.71 29.54 68.60 2.03 45.73 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 19 C 0.11 2.43 6.17 86.22 0.53 2.97 16 20 C -0.16 -2.64 5.79 30.53 0.18 -2.46 16 21 C 0.12 1.78 3.19 30.62 0.10 1.88 16 22 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 23 O -0.57 -7.86 11.43 -148.98 -1.70 -9.56 16 24 H 0.05 0.92 8.14 -2.38 -0.02 0.91 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 1.08 7.72 -2.39 -0.02 1.06 16 27 H 0.09 1.90 7.81 -2.39 -0.02 1.88 16 28 H 0.08 2.12 6.86 -2.39 -0.02 2.11 16 29 H 0.14 4.88 8.14 -2.39 -0.02 4.86 16 30 H 0.14 4.88 8.14 -2.39 -0.02 4.86 16 31 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 34 H 0.08 1.98 6.85 -2.38 -0.02 1.96 16 35 H 0.09 1.61 7.81 -2.39 -0.02 1.59 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.39 2.16 9.08 -74.06 -0.67 1.49 16 Total: -1.00 -76.70 319.09 -2.03 -78.74 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.37 Total: 12.79 kcal Atomic # 6 Polarization: -52.84 SS G_CDS: 3.19 Total: -49.66 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -1.37 Total: -86.31 kcal Atomic # 8 Polarization: -93.42 SS G_CDS: -5.94 Total: -99.36 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 98.37 SS G_CDS: -0.31 Total: 98.06 kcal Total: -76.70 -2.03 -78.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494325479.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.202 kcal (2) G-P(sol) polarization free energy of solvation -76.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds