Wall clock time and date at job start Mon Mar 30 2020 02:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00069 * 2 1 4 4 C 1.53175 * 109.53763 * 300.44344 * 3 2 1 5 5 C 1.53092 * 109.16179 * 176.85076 * 4 3 2 6 6 O 1.42910 * 109.41107 * 302.39040 * 5 4 3 7 7 C 1.42900 * 114.09727 * 61.16189 * 6 5 4 8 8 C 1.53090 * 109.41229 * 298.83586 * 7 6 5 9 9 S 1.65604 * 119.99791 * 179.97438 * 2 1 3 10 10 O 1.42098 * 104.27785 * 26.07063 * 9 2 1 11 11 O 1.42101 * 104.27565 * 153.92708 * 9 2 1 12 12 C 1.81400 * 104.45210 * 269.99880 * 9 2 1 13 13 C 1.53000 * 109.47217 * 180.02562 * 12 9 2 14 14 C 1.50691 * 109.47005 * 180.02562 * 13 12 9 15 15 H 1.08000 * 120.00324 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00075 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99953 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99752 * 359.97438 * 16 14 13 19 19 H 1.48491 * 109.46966 * 90.00005 * 18 16 14 20 20 H 1.48504 * 109.47049 * 210.00296 * 18 16 14 21 21 H 1.48502 * 109.47224 * 329.99977 * 18 16 14 22 22 H 1.08994 * 109.47320 * 90.00208 * 1 2 3 23 23 H 1.09006 * 109.47037 * 210.00734 * 1 2 3 24 24 H 1.08996 * 109.47116 * 329.99747 * 1 2 3 25 25 H 1.08997 * 109.61242 * 180.22724 * 3 2 1 26 26 H 1.09006 * 109.52647 * 296.75376 * 4 3 2 27 27 H 1.08998 * 109.52537 * 56.94268 * 4 3 2 28 28 H 1.08998 * 109.48147 * 182.40843 * 5 4 3 29 29 H 1.08997 * 109.48550 * 62.37144 * 5 4 3 30 30 H 1.09003 * 109.47953 * 178.86010 * 7 6 5 31 31 H 1.08995 * 109.49265 * 58.82602 * 7 6 5 32 32 H 1.09001 * 109.52724 * 297.70937 * 8 7 6 33 33 H 1.09000 * 109.52338 * 177.51272 * 8 7 6 34 34 H 1.08998 * 109.47028 * 300.00238 * 12 9 2 35 35 H 1.09000 * 109.46854 * 60.00043 * 12 9 2 36 36 H 1.09005 * 109.46249 * 299.99781 * 13 12 9 37 37 H 1.08992 * 109.47217 * 59.99492 * 13 12 9 38 38 H 0.96998 * 119.99921 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.8202 2.0781 -1.2445 5 6 2.5294 3.4340 -1.1963 6 8 2.1668 4.1171 0.0055 7 6 2.5375 3.4295 1.2020 8 6 1.8286 2.0735 1.2501 9 16 2.2929 -1.4342 0.0006 10 8 1.3969 -2.3564 -0.6041 11 8 3.5394 -1.1195 -0.6048 12 6 2.5193 -1.8255 1.7574 13 6 3.2819 -3.1451 1.8919 14 6 3.4694 -3.4704 3.3513 15 1 3.0836 -2.8025 4.1073 16 6 4.1334 -4.6207 3.7214 17 7 4.2975 -4.9043 4.9951 18 14 4.8000 -5.7762 2.4138 19 1 6.1892 -5.3824 2.0670 20 1 4.7948 -7.1673 2.9333 21 1 3.9459 -5.6973 1.2015 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5140 24 1 -0.3633 0.8899 0.5139 25 1 3.2696 1.0722 -0.0041 26 1 2.1296 1.5369 -2.1387 27 1 0.7413 2.2319 -1.2658 28 1 2.2312 4.0311 -2.0580 29 1 3.6084 3.2808 -1.2159 30 1 2.2451 4.0234 2.0680 31 1 3.6166 3.2762 1.2140 32 1 0.7499 2.2271 1.2792 33 1 2.1441 1.5288 2.1400 34 1 3.0866 -1.0279 2.2371 35 1 1.5451 -1.9178 2.2375 36 1 2.7148 -3.9428 1.4121 37 1 4.2560 -3.0523 1.4118 38 1 4.7649 -5.7133 5.2555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530805879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:06 Heat of formation + Delta-G solvation = -125.091259 kcal Electronic energy + Delta-G solvation = -20637.269375 eV Core-core repulsion = 17413.837526 eV Total energy + Delta-G solvation = -3223.431849 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.71393 -36.82356 -36.46570 -35.58837 -33.98174 -31.83644 -31.53088 -31.31089 -26.86053 -26.00697 -24.10868 -23.77404 -21.24084 -20.19191 -18.73478 -17.78017 -16.99166 -16.76571 -16.26519 -15.65826 -15.61857 -14.97782 -14.64438 -14.39261 -14.22864 -13.83264 -13.59981 -13.50719 -12.84096 -12.57689 -12.51485 -11.93797 -11.83673 -11.76892 -11.64710 -11.50578 -11.36014 -11.28517 -11.25620 -11.18685 -10.48991 -10.44759 -10.17438 -9.85068 -9.73936 -9.45305 -8.90421 -8.69088 -6.19378 -4.20817 0.57893 2.82833 3.24269 3.31776 3.35853 3.66415 4.13266 4.33301 4.37718 4.43069 4.57414 4.76958 4.77891 4.93796 5.01640 5.12069 5.18268 5.32039 5.41505 5.43560 5.47595 5.48284 5.50850 5.60083 5.71548 5.74541 5.86065 5.90896 6.19191 6.24893 6.54816 6.77895 6.90458 6.96413 7.51716 8.33591 8.81489 9.40278 10.93014 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027500 B = 0.004866 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.932724 B = 5753.066098 C = 6144.832950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -1.003 6.003 3 C 0.146 3.854 4 C -0.161 4.161 5 C 0.062 3.938 6 O -0.384 6.384 7 C 0.062 3.938 8 C -0.171 4.171 9 S 2.585 3.415 10 O -0.962 6.962 11 O -0.964 6.964 12 C -0.582 4.582 13 C -0.007 4.007 14 C -0.520 4.520 15 H 0.078 0.922 16 C 0.072 3.928 17 N -0.895 5.895 18 Si 0.869 3.131 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.262 1.262 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.032 0.968 37 H 0.028 0.972 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.188 16.099 -9.909 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.838 5.838 3 C 0.039 3.961 4 C -0.201 4.201 5 C -0.015 4.015 6 O -0.303 6.303 7 C -0.015 4.015 8 C -0.210 4.210 9 S 2.684 3.316 10 O -0.952 6.952 11 O -0.955 6.955 12 C -0.715 4.715 13 C -0.046 4.046 14 C -0.559 4.559 15 H 0.096 0.904 16 C -0.130 4.130 17 N -0.533 5.533 18 Si 0.695 3.305 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.186 1.186 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.121 0.879 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.977 15.666 -10.598 19.835 hybrid contribution 0.345 -0.843 0.202 0.933 sum -5.633 14.822 -10.395 18.960 Atomic orbital electron populations 1.21396 0.78790 1.02908 1.02025 1.57710 1.14996 1.20878 1.90240 1.20899 0.97053 0.83371 0.94732 1.22533 1.02268 0.96438 0.98827 1.22590 0.98620 0.92610 0.87720 1.87922 1.81913 1.46628 1.13829 1.22589 0.98555 0.92565 0.87830 1.22665 1.02662 0.96822 0.98871 1.05842 0.73723 0.72746 0.79274 1.93548 1.64676 1.61983 1.74996 1.93532 1.43992 1.82861 1.75078 1.30343 1.10419 1.09576 1.21187 1.19409 0.94859 0.89317 1.01034 1.20839 1.37641 1.08147 0.89265 0.90428 1.24981 0.95236 0.97472 0.95355 1.69876 1.41955 1.26167 1.15312 0.86930 0.80305 0.80658 0.82602 1.19641 1.20695 1.18645 0.92671 0.90875 0.91098 0.87895 0.90250 0.90485 0.88625 0.92703 0.88457 0.92668 0.90203 0.89881 0.85776 0.85665 0.94982 0.95425 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 9.19 59.85 0.55 1.54 16 2 N -1.00 -12.82 3.01 -114.42 -0.34 -13.16 16 3 C 0.15 1.66 2.55 -67.75 -0.17 1.48 16 4 C -0.16 -1.60 5.46 -26.59 -0.15 -1.74 16 5 C 0.06 0.56 6.84 37.21 0.25 0.81 16 6 O -0.38 -3.98 10.77 -35.23 -0.38 -4.36 16 7 C 0.06 0.55 6.84 37.20 0.25 0.81 16 8 C -0.17 -1.63 5.46 -26.59 -0.15 -1.77 16 9 S 2.59 43.89 5.37 -107.50 -0.58 43.31 16 10 O -0.96 -18.82 17.09 -57.54 -0.98 -19.80 16 11 O -0.96 -18.52 16.57 -57.54 -0.95 -19.47 16 12 C -0.58 -10.53 6.12 37.16 0.23 -10.31 16 13 C -0.01 -0.16 4.05 -27.89 -0.11 -0.28 16 14 C -0.52 -14.42 9.66 -34.44 -0.33 -14.76 16 15 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 17 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 18 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.76 7.79 -51.93 -0.40 0.36 16 24 H 0.07 0.58 6.38 -51.93 -0.33 0.25 16 25 H 0.10 1.26 6.88 -51.93 -0.36 0.90 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.72 7.57 -51.93 -0.39 0.33 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.71 6.56 -51.93 -0.34 0.37 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 35 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 36 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 37 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 316.14 15.07 4.76 4.76 Total: -1.00 -34.06 316.14 -8.07 -42.13 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.98 Total: -1.76 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 0.28 Total: -22.23 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.43 Total: -39.30 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -2.32 Total: -43.64 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 16 Polarization: 43.89 SS G_CDS: -0.58 Total: 43.31 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.06 -8.07 -42.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530805879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.960 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds