Wall clock time and date at job start Mon Mar 30 2020 02:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00069 * 2 1 4 4 C 1.53175 * 109.53763 * 300.44344 * 3 2 1 5 5 C 1.53092 * 109.16179 * 176.85076 * 4 3 2 6 6 O 1.42910 * 109.41107 * 302.39040 * 5 4 3 7 7 C 1.42900 * 114.09727 * 61.16189 * 6 5 4 8 8 C 1.53090 * 109.41229 * 298.83586 * 7 6 5 9 9 S 1.65604 * 119.99791 * 179.97438 * 2 1 3 10 10 O 1.42098 * 104.27785 * 26.07063 * 9 2 1 11 11 O 1.42101 * 104.27565 * 153.92708 * 9 2 1 12 12 C 1.81400 * 104.45210 * 269.99880 * 9 2 1 13 13 C 1.53000 * 109.47217 * 180.02562 * 12 9 2 14 14 C 1.50691 * 109.47005 * 180.02562 * 13 12 9 15 15 H 1.08000 * 120.00324 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00075 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99953 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99752 * 359.97438 * 16 14 13 19 19 H 1.48491 * 109.46966 * 90.00005 * 18 16 14 20 20 H 1.48504 * 109.47049 * 210.00296 * 18 16 14 21 21 H 1.48502 * 109.47224 * 329.99977 * 18 16 14 22 22 H 1.08994 * 109.47320 * 90.00208 * 1 2 3 23 23 H 1.09006 * 109.47037 * 210.00734 * 1 2 3 24 24 H 1.08996 * 109.47116 * 329.99747 * 1 2 3 25 25 H 1.08997 * 109.61242 * 180.22724 * 3 2 1 26 26 H 1.09006 * 109.52647 * 296.75376 * 4 3 2 27 27 H 1.08998 * 109.52537 * 56.94268 * 4 3 2 28 28 H 1.08998 * 109.48147 * 182.40843 * 5 4 3 29 29 H 1.08997 * 109.48550 * 62.37144 * 5 4 3 30 30 H 1.09003 * 109.47953 * 178.86010 * 7 6 5 31 31 H 1.08995 * 109.49265 * 58.82602 * 7 6 5 32 32 H 1.09001 * 109.52724 * 297.70937 * 8 7 6 33 33 H 1.09000 * 109.52338 * 177.51272 * 8 7 6 34 34 H 1.08998 * 109.47028 * 300.00238 * 12 9 2 35 35 H 1.09000 * 109.46854 * 60.00043 * 12 9 2 36 36 H 1.09005 * 109.46249 * 299.99781 * 13 12 9 37 37 H 1.08992 * 109.47217 * 59.99492 * 13 12 9 38 38 H 0.96998 * 119.99921 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.8202 2.0781 -1.2445 5 6 2.5294 3.4340 -1.1963 6 8 2.1668 4.1171 0.0055 7 6 2.5375 3.4295 1.2020 8 6 1.8286 2.0735 1.2501 9 16 2.2929 -1.4342 0.0006 10 8 1.3969 -2.3564 -0.6041 11 8 3.5394 -1.1195 -0.6048 12 6 2.5193 -1.8255 1.7574 13 6 3.2819 -3.1451 1.8919 14 6 3.4694 -3.4704 3.3513 15 1 3.0836 -2.8025 4.1073 16 6 4.1334 -4.6207 3.7214 17 7 4.2975 -4.9043 4.9951 18 14 4.8000 -5.7762 2.4138 19 1 6.1892 -5.3824 2.0670 20 1 4.7948 -7.1673 2.9333 21 1 3.9459 -5.6973 1.2015 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5140 24 1 -0.3633 0.8899 0.5139 25 1 3.2696 1.0722 -0.0041 26 1 2.1296 1.5369 -2.1387 27 1 0.7413 2.2319 -1.2658 28 1 2.2312 4.0311 -2.0580 29 1 3.6084 3.2808 -1.2159 30 1 2.2451 4.0234 2.0680 31 1 3.6166 3.2762 1.2140 32 1 0.7499 2.2271 1.2792 33 1 2.1441 1.5288 2.1400 34 1 3.0866 -1.0279 2.2371 35 1 1.5451 -1.9178 2.2375 36 1 2.7148 -3.9428 1.4121 37 1 4.2560 -3.0523 1.4118 38 1 4.7649 -5.7133 5.2555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530805879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:06 Heat of formation + Delta-G solvation = -150.626407 kcal Electronic energy + Delta-G solvation = -20638.376662 eV Core-core repulsion = 17413.837526 eV Total energy + Delta-G solvation = -3224.539136 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48908 -38.26731 -37.39651 -37.01250 -35.91504 -33.49577 -32.69150 -32.03382 -27.96436 -27.66894 -24.98750 -24.50703 -23.07674 -21.04369 -19.98021 -19.39411 -18.58882 -17.73420 -17.21130 -16.86867 -16.79375 -16.41995 -15.83085 -15.56820 -15.23276 -15.18443 -14.84130 -14.63083 -14.31586 -13.83012 -13.61296 -13.28259 -13.20915 -13.15230 -13.09008 -12.97986 -12.65639 -12.30909 -12.25703 -12.20760 -12.02636 -11.95820 -11.72912 -11.34988 -11.12528 -10.85982 -10.57493 -9.95806 -8.38132 -6.43961 -0.78464 1.30588 1.32655 1.42498 1.63564 2.28081 2.76436 2.95826 2.98087 3.11569 3.53553 3.80103 3.82313 3.96277 4.05278 4.05951 4.13506 4.32507 4.46670 4.53304 4.57605 4.67024 4.72680 4.83143 4.84667 4.90593 4.96577 5.03673 5.08354 5.11900 5.16622 5.38942 5.45647 5.59739 6.15074 6.27110 6.62003 7.20630 8.77442 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027500 B = 0.004866 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.932724 B = 5753.066098 C = 6144.832950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.992 5.992 3 C 0.136 3.864 4 C -0.158 4.158 5 C 0.061 3.939 6 O -0.396 6.396 7 C 0.059 3.941 8 C -0.167 4.167 9 S 2.611 3.389 10 O -0.987 6.987 11 O -0.987 6.987 12 C -0.587 4.587 13 C -0.017 4.017 14 C -0.527 4.527 15 H 0.050 0.950 16 C 0.015 3.985 17 N -0.939 5.939 18 Si 0.924 3.076 19 H -0.260 1.260 20 H -0.273 1.273 21 H -0.251 1.251 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.031 0.969 37 H 0.030 0.970 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.796 17.259 -11.242 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.830 5.830 3 C 0.030 3.970 4 C -0.198 4.198 5 C -0.016 4.016 6 O -0.315 6.315 7 C -0.018 4.018 8 C -0.207 4.207 9 S 2.709 3.291 10 O -0.977 6.977 11 O -0.978 6.978 12 C -0.719 4.719 13 C -0.056 4.056 14 C -0.566 4.566 15 H 0.068 0.932 16 C -0.183 4.183 17 N -0.579 5.579 18 Si 0.746 3.254 19 H -0.185 1.185 20 H -0.198 1.198 21 H -0.175 1.175 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.117 0.883 25 H 0.109 0.891 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.131 0.869 29 H 0.074 0.926 30 H 0.131 0.869 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.584 16.823 -11.924 21.646 hybrid contribution 0.474 -1.084 0.650 1.350 sum -6.109 15.739 -11.274 20.301 Atomic orbital electron populations 1.21682 0.77016 1.04345 1.03040 1.57383 1.15954 1.19871 1.89816 1.21140 0.96401 0.82854 0.96608 1.22523 1.02955 0.96579 0.97709 1.22691 0.98678 0.92257 0.87999 1.87911 1.82074 1.47137 1.14411 1.22706 0.98697 0.92371 0.88044 1.22656 1.03377 0.96793 0.97825 1.04828 0.73090 0.73174 0.78020 1.93510 1.65244 1.63807 1.75182 1.93497 1.45601 1.83457 1.75204 1.30340 1.10670 1.07299 1.23562 1.19366 0.95857 0.92220 0.98132 1.21161 1.36803 1.07564 0.91105 0.93188 1.25853 0.95763 0.99361 0.97364 1.70000 1.43399 1.27142 1.17352 0.86046 0.80234 0.78810 0.80286 1.18466 1.19813 1.17453 0.91941 0.90838 0.88336 0.89062 0.90753 0.89569 0.86862 0.92566 0.86911 0.92490 0.89191 0.89756 0.84345 0.84282 0.95118 0.95175 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.54 9.19 127.77 1.17 2.72 16 2 N -0.99 -23.41 3.01 -515.91 -1.55 -24.96 16 3 C 0.14 2.82 2.55 45.11 0.11 2.93 16 4 C -0.16 -2.78 5.46 30.68 0.17 -2.61 16 5 C 0.06 0.96 6.84 72.01 0.49 1.45 16 6 O -0.40 -7.25 10.77 -148.98 -1.60 -8.86 16 7 C 0.06 0.92 6.84 72.01 0.49 1.41 16 8 C -0.17 -2.78 5.46 30.68 0.17 -2.62 16 9 S 2.61 85.47 5.37 -56.49 -0.30 85.17 16 10 O -0.99 -37.46 17.09 -127.65 -2.18 -39.65 16 11 O -0.99 -36.99 16.57 -127.65 -2.12 -39.10 16 12 C -0.59 -20.75 6.12 71.98 0.44 -20.31 16 13 C -0.02 -0.78 4.05 29.85 0.12 -0.66 16 14 C -0.53 -29.62 9.66 25.60 0.25 -29.37 16 15 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 16 C 0.02 0.88 5.47 84.66 0.46 1.34 16 17 N -0.94 -57.45 13.96 21.45 0.30 -57.15 16 18 Si 0.92 43.66 27.47 68.60 1.88 45.55 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 22 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.07 1.37 7.79 -2.38 -0.02 1.36 16 24 H 0.10 1.28 6.38 -2.39 -0.02 1.27 16 25 H 0.09 2.12 6.88 -2.39 -0.02 2.11 16 26 H 0.07 1.38 8.14 -2.38 -0.02 1.37 16 27 H 0.09 1.36 7.57 -2.39 -0.02 1.34 16 28 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 1.32 6.56 -2.39 -0.02 1.30 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16 35 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 36 H 0.03 1.43 7.20 -2.38 -0.02 1.41 16 37 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 38 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -72.71 316.14 -0.72 -73.43 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.98 Total: 11.29 kcal Atomic # 6 Polarization: -49.59 SS G_CDS: 3.88 Total: -45.71 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -1.25 Total: -82.11 kcal Atomic # 8 Polarization: -81.70 SS G_CDS: -5.90 Total: -87.60 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.55 kcal Atomic # 16 Polarization: 85.47 SS G_CDS: -0.30 Total: 85.17 kcal Total: -72.71 -0.72 -73.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530805879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.200 kcal (2) G-P(sol) polarization free energy of solvation -72.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds