Wall clock time and date at job start Mon Mar 30 2020 02:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 120.00112 * 2 1 4 4 C 1.52997 * 109.47335 * 274.99914 * 3 2 1 5 5 C 1.52998 * 109.47168 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.47020 * 179.97438 * 5 4 3 7 7 S 1.65597 * 119.99755 * 180.02562 * 2 1 3 8 8 O 1.42096 * 104.27684 * 153.92972 * 7 2 1 9 9 O 1.42100 * 104.28010 * 26.06978 * 7 2 1 10 10 C 1.81409 * 104.45087 * 270.00089 * 7 2 1 11 11 C 1.52999 * 109.47023 * 183.96374 * 10 7 2 12 12 C 1.50694 * 115.54937 * 295.00749 * 11 10 7 13 13 H 1.08001 * 120.00403 * 95.26309 * 12 11 10 14 14 C 1.37886 * 120.00068 * 275.53866 * 12 11 10 15 15 N 1.31518 * 119.99551 * 6.04991 * 14 12 11 16 16 Si 1.86795 * 120.00107 * 186.04711 * 14 12 11 17 17 H 1.48501 * 109.47268 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47284 * 120.00215 * 16 14 12 19 19 H 1.48500 * 109.47219 * 240.00193 * 16 14 12 20 20 C 1.53002 * 117.50097 * 80.67711 * 11 10 7 21 21 C 1.53001 * 117.49783 * 149.33641 * 11 10 7 22 22 H 1.08996 * 109.46784 * 270.00106 * 1 2 3 23 23 H 1.08995 * 109.46722 * 29.99635 * 1 2 3 24 24 H 1.08997 * 109.47003 * 150.00154 * 1 2 3 25 25 H 1.08997 * 109.47204 * 35.00168 * 3 2 1 26 26 H 1.09000 * 109.47030 * 154.99774 * 3 2 1 27 27 H 1.08997 * 109.47182 * 300.00268 * 4 3 2 28 28 H 1.09008 * 109.46887 * 60.00017 * 4 3 2 29 29 H 1.08997 * 109.47372 * 300.00254 * 5 4 3 30 30 H 1.08995 * 109.46988 * 60.00432 * 5 4 3 31 31 H 0.96698 * 113.99965 * 180.02562 * 6 5 4 32 32 H 1.08995 * 109.46821 * 63.95803 * 10 7 2 33 33 H 1.09001 * 109.46322 * 303.96076 * 10 7 2 34 34 H 0.96993 * 119.99287 * 185.00187 * 15 14 12 35 35 H 1.08996 * 117.50314 * 214.99958 * 20 11 10 36 36 H 1.09005 * 117.49426 * 0.02562 * 20 11 10 37 37 H 1.09005 * 117.49409 * 359.97438 * 21 11 10 38 38 H 1.08994 * 117.49689 * 144.97281 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3437 1.7732 -1.4370 5 6 3.1082 3.0985 -1.4369 6 8 3.2452 3.5695 -2.7791 7 16 2.2930 -1.4342 -0.0006 8 8 3.5394 -1.1189 -0.6057 9 8 1.3969 -2.3559 -0.6062 10 6 2.5193 -1.8270 1.7559 11 6 3.3660 -3.0943 1.8900 12 6 2.7388 -4.3549 1.3530 13 1 2.9641 -4.6852 0.3497 14 6 1.8727 -5.0836 2.1405 15 7 1.5010 -4.6186 3.3132 16 14 1.2273 -6.7310 1.5416 17 1 1.7929 -7.0264 0.2007 18 1 1.6306 -7.7965 2.4940 19 1 -0.2542 -6.6801 1.4541 20 6 4.8831 -2.9478 1.7565 21 6 4.2578 -3.2204 3.1268 22 1 -0.3633 0.0000 1.0276 23 1 -0.3632 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6503 2.0042 0.5894 26 1 3.1858 1.1176 0.4343 27 1 2.8910 1.0377 -2.0264 28 1 1.3554 1.9243 -1.8713 29 1 2.5605 3.8339 -0.8475 30 1 4.0964 2.9479 -1.0025 31 1 3.7215 4.4076 -2.8551 32 1 1.5466 -1.9890 2.2201 33 1 3.0249 -0.9981 2.2512 34 1 0.9505 -5.1624 3.8981 35 1 5.4275 -3.7631 1.2802 36 1 5.2780 -1.9484 1.5734 37 1 4.2416 -2.4002 3.8447 38 1 4.3905 -4.2150 3.5523 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565235373.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:29 Heat of formation + Delta-G solvation = -101.720553 kcal Electronic energy + Delta-G solvation = -20674.807229 eV Core-core repulsion = 17452.388810 eV Total energy + Delta-G solvation = -3222.418419 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -37.55847 -36.76445 -36.30473 -36.09878 -35.03155 -32.03979 -31.67890 -28.17016 -26.83773 -25.47412 -24.16551 -21.53027 -21.21392 -19.55881 -18.32734 -17.47306 -17.06241 -16.49299 -15.86028 -15.38724 -15.16856 -14.72219 -14.35587 -13.82464 -13.75954 -13.54146 -13.19458 -13.02059 -12.27548 -12.18962 -11.92088 -11.81853 -11.45044 -11.27000 -11.22392 -11.05038 -10.96490 -10.92716 -10.74282 -10.55513 -10.45396 -10.11365 -10.06524 -9.71125 -8.95882 -8.85313 -8.55422 -8.07937 -6.14678 -4.24813 1.03772 3.29053 3.29611 3.37588 3.45002 4.11233 4.38559 4.61867 4.78323 4.88165 5.03163 5.11815 5.14899 5.18921 5.29257 5.43813 5.45663 5.55646 5.65551 5.74978 5.91794 5.95485 6.03131 6.21572 6.28254 6.30413 6.38237 6.60722 6.70683 6.84015 6.98334 7.23858 7.38327 7.48278 7.80621 8.19744 8.81844 9.47032 10.93812 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028211 B = 0.005376 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.274398 B = 5206.861977 C = 5584.565170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.014 6.014 3 C 0.131 3.869 4 C -0.143 4.143 5 C 0.079 3.921 6 O -0.575 6.575 7 S 2.604 3.396 8 O -0.969 6.969 9 O -0.946 6.946 10 C -0.553 4.553 11 C 0.041 3.959 12 C -0.511 4.511 13 H 0.069 0.931 14 C 0.080 3.920 15 N -0.875 5.875 16 Si 0.892 3.108 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.281 1.281 20 C -0.208 4.208 21 C -0.140 4.140 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.377 0.623 32 H 0.133 0.867 33 H 0.096 0.904 34 H 0.262 0.738 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 14.633 -2.784 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.850 5.850 3 C 0.005 3.995 4 C -0.183 4.183 5 C 0.000 4.000 6 O -0.380 6.380 7 S 2.702 3.298 8 O -0.960 6.960 9 O -0.937 6.937 10 C -0.686 4.686 11 C 0.039 3.961 12 C -0.549 4.549 13 H 0.087 0.913 14 C -0.124 4.124 15 N -0.511 5.511 16 Si 0.718 3.282 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.206 1.206 20 C -0.246 4.246 21 C -0.179 4.179 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.224 0.776 32 H 0.151 0.849 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.023 13.626 -3.574 14.087 hybrid contribution -0.258 -0.088 0.818 0.862 sum -0.281 13.538 -2.756 13.818 Atomic orbital electron populations 1.21517 0.79004 1.03801 1.01767 1.57836 1.15066 1.21504 1.90582 1.20990 0.96725 0.85950 0.95862 1.21993 1.01401 0.96444 0.98439 1.22102 0.99198 0.95430 0.83236 1.86502 1.80320 1.43374 1.27767 1.05350 0.73615 0.71963 0.78862 1.93492 1.44306 1.83125 1.75036 1.93522 1.64466 1.61065 1.74603 1.30020 1.10650 1.05998 1.21962 1.18315 0.86018 0.91209 1.00602 1.20592 1.26428 1.06773 1.01064 0.91299 1.24945 0.94478 0.98018 0.94988 1.70020 1.35337 1.36213 1.09504 0.86528 0.78983 0.83329 0.79319 1.19196 1.20869 1.20636 1.23202 0.98127 1.00796 1.02454 1.22542 1.04741 1.00820 0.89846 0.92901 0.91454 0.89672 0.90708 0.90092 0.89958 0.91056 0.93710 0.93227 0.77642 0.84889 0.88509 0.92843 0.89486 0.90700 0.91572 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.66 59.85 0.64 1.77 16 2 N -1.01 -15.78 3.12 -121.76 -0.38 -16.16 16 3 C 0.13 1.65 5.24 -4.05 -0.02 1.63 16 4 C -0.14 -1.86 5.91 -26.73 -0.16 -2.01 16 5 C 0.08 0.81 7.05 37.16 0.26 1.07 16 6 O -0.57 -6.31 13.66 -35.23 -0.48 -6.79 16 7 S 2.60 53.45 5.13 -107.50 -0.55 52.89 16 8 O -0.97 -21.16 16.74 -57.54 -0.96 -22.12 16 9 O -0.95 -22.77 16.11 -57.54 -0.93 -23.70 16 10 C -0.55 -11.67 6.03 37.16 0.22 -11.45 16 11 C 0.04 1.00 1.33 -155.66 -0.21 0.79 16 12 C -0.51 -14.06 8.07 -34.44 -0.28 -14.34 16 13 H 0.07 1.95 7.82 -52.49 -0.41 1.54 16 14 C 0.08 2.20 5.39 -17.82 -0.10 2.10 16 15 N -0.88 -24.09 12.94 55.43 0.72 -23.37 16 16 Si 0.89 21.49 29.55 -169.99 -5.02 16.46 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C -0.21 -4.57 9.96 -26.69 -0.27 -4.84 16 21 C -0.14 -3.19 9.46 -26.69 -0.25 -3.44 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 24 H 0.08 1.27 6.91 -51.93 -0.36 0.91 16 25 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 26 H 0.08 1.00 7.61 -51.93 -0.40 0.60 16 27 H 0.08 1.30 7.90 -51.93 -0.41 0.89 16 28 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.38 2.18 9.12 45.56 0.42 2.59 16 32 H 0.13 2.93 8.14 -51.93 -0.42 2.51 16 33 H 0.10 1.71 8.09 -51.92 -0.42 1.29 16 34 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 35 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 36 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -33.79 332.90 -8.10 -41.89 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.36 Total: 4.59 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: -0.15 Total: -28.71 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.34 Total: -39.53 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -2.37 Total: -52.61 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 53.45 SS G_CDS: -0.55 Total: 52.89 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.79 -8.10 -41.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565235373.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.826 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds