Wall clock time and date at job start Mon Mar 30 2020 02:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 120.00112 * 2 1 4 4 C 1.52997 * 109.47335 * 274.99914 * 3 2 1 5 5 C 1.52998 * 109.47168 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.47020 * 179.97438 * 5 4 3 7 7 S 1.65597 * 119.99755 * 180.02562 * 2 1 3 8 8 O 1.42096 * 104.27684 * 153.92972 * 7 2 1 9 9 O 1.42100 * 104.28010 * 26.06978 * 7 2 1 10 10 C 1.81409 * 104.45087 * 270.00089 * 7 2 1 11 11 C 1.52999 * 109.47023 * 183.96374 * 10 7 2 12 12 C 1.50694 * 115.54937 * 295.00749 * 11 10 7 13 13 H 1.08001 * 120.00403 * 95.26309 * 12 11 10 14 14 C 1.37886 * 120.00068 * 275.53866 * 12 11 10 15 15 N 1.31518 * 119.99551 * 6.04991 * 14 12 11 16 16 Si 1.86795 * 120.00107 * 186.04711 * 14 12 11 17 17 H 1.48501 * 109.47268 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47284 * 120.00215 * 16 14 12 19 19 H 1.48500 * 109.47219 * 240.00193 * 16 14 12 20 20 C 1.53002 * 117.50097 * 80.67711 * 11 10 7 21 21 C 1.53001 * 117.49783 * 149.33641 * 11 10 7 22 22 H 1.08996 * 109.46784 * 270.00106 * 1 2 3 23 23 H 1.08995 * 109.46722 * 29.99635 * 1 2 3 24 24 H 1.08997 * 109.47003 * 150.00154 * 1 2 3 25 25 H 1.08997 * 109.47204 * 35.00168 * 3 2 1 26 26 H 1.09000 * 109.47030 * 154.99774 * 3 2 1 27 27 H 1.08997 * 109.47182 * 300.00268 * 4 3 2 28 28 H 1.09008 * 109.46887 * 60.00017 * 4 3 2 29 29 H 1.08997 * 109.47372 * 300.00254 * 5 4 3 30 30 H 1.08995 * 109.46988 * 60.00432 * 5 4 3 31 31 H 0.96698 * 113.99965 * 180.02562 * 6 5 4 32 32 H 1.08995 * 109.46821 * 63.95803 * 10 7 2 33 33 H 1.09001 * 109.46322 * 303.96076 * 10 7 2 34 34 H 0.96993 * 119.99287 * 185.00187 * 15 14 12 35 35 H 1.08996 * 117.50314 * 214.99958 * 20 11 10 36 36 H 1.09005 * 117.49426 * 0.02562 * 20 11 10 37 37 H 1.09005 * 117.49409 * 359.97438 * 21 11 10 38 38 H 1.08994 * 117.49689 * 144.97281 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3437 1.7732 -1.4370 5 6 3.1082 3.0985 -1.4369 6 8 3.2452 3.5695 -2.7791 7 16 2.2930 -1.4342 -0.0006 8 8 3.5394 -1.1189 -0.6057 9 8 1.3969 -2.3559 -0.6062 10 6 2.5193 -1.8270 1.7559 11 6 3.3660 -3.0943 1.8900 12 6 2.7388 -4.3549 1.3530 13 1 2.9641 -4.6852 0.3497 14 6 1.8727 -5.0836 2.1405 15 7 1.5010 -4.6186 3.3132 16 14 1.2273 -6.7310 1.5416 17 1 1.7929 -7.0264 0.2007 18 1 1.6306 -7.7965 2.4940 19 1 -0.2542 -6.6801 1.4541 20 6 4.8831 -2.9478 1.7565 21 6 4.2578 -3.2204 3.1268 22 1 -0.3633 0.0000 1.0276 23 1 -0.3632 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6503 2.0042 0.5894 26 1 3.1858 1.1176 0.4343 27 1 2.8910 1.0377 -2.0264 28 1 1.3554 1.9243 -1.8713 29 1 2.5605 3.8339 -0.8475 30 1 4.0964 2.9479 -1.0025 31 1 3.7215 4.4076 -2.8551 32 1 1.5466 -1.9890 2.2201 33 1 3.0249 -0.9981 2.2512 34 1 0.9505 -5.1624 3.8981 35 1 5.4275 -3.7631 1.2802 36 1 5.2780 -1.9484 1.5734 37 1 4.2416 -2.4002 3.8447 38 1 4.3905 -4.2150 3.5523 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565235373.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:29 Heat of formation + Delta-G solvation = -128.035421 kcal Electronic energy + Delta-G solvation = -20675.948327 eV Core-core repulsion = 17452.388810 eV Total energy + Delta-G solvation = -3223.559517 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.58499 -38.48631 -37.96068 -37.14436 -36.70161 -34.09073 -32.67258 -29.85996 -27.86528 -27.48874 -25.22269 -22.99884 -22.47119 -21.39914 -19.79070 -18.63978 -18.36753 -18.16804 -17.18295 -16.82006 -16.65223 -16.35605 -15.84254 -15.47936 -14.99197 -14.91000 -14.39311 -14.14412 -13.76085 -13.66108 -13.48095 -13.19503 -13.12762 -12.92414 -12.84859 -12.81853 -12.49191 -12.43873 -12.23448 -11.99431 -11.94367 -11.79995 -11.53119 -10.86071 -10.81852 -10.55879 -10.19404 -9.75564 -8.21182 -6.35165 -0.53997 1.35767 1.40079 1.50944 1.92475 2.39659 2.99582 3.07300 3.30638 3.36848 3.46539 3.75140 4.00502 4.11793 4.27532 4.31182 4.43212 4.50295 4.52780 4.59463 4.63928 4.67145 4.77050 4.83370 4.92533 4.97069 4.99076 5.20623 5.25123 5.28322 5.45546 5.58694 5.70607 5.72381 6.21419 6.71594 6.96991 7.37658 8.86907 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028211 B = 0.005376 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.274398 B = 5206.861977 C = 5584.565170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -1.007 6.007 3 C 0.122 3.878 4 C -0.146 4.146 5 C 0.080 3.920 6 O -0.600 6.600 7 S 2.615 3.385 8 O -0.988 6.988 9 O -0.993 6.993 10 C -0.550 4.550 11 C 0.006 3.994 12 C -0.530 4.530 13 H 0.046 0.954 14 C 0.042 3.958 15 N -0.892 5.892 16 Si 0.934 3.066 17 H -0.275 1.275 18 H -0.269 1.269 19 H -0.277 1.277 20 C -0.196 4.196 21 C -0.136 4.136 22 H 0.071 0.929 23 H 0.101 0.899 24 H 0.061 0.939 25 H 0.119 0.881 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.399 0.601 32 H 0.121 0.879 33 H 0.133 0.867 34 H 0.265 0.735 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 16.887 -1.980 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.846 5.846 3 C -0.003 4.003 4 C -0.186 4.186 5 C 0.002 3.998 6 O -0.409 6.409 7 S 2.713 3.287 8 O -0.979 6.979 9 O -0.983 6.983 10 C -0.682 4.682 11 C 0.004 3.996 12 C -0.568 4.568 13 H 0.064 0.936 14 C -0.160 4.160 15 N -0.528 5.528 16 Si 0.760 3.240 17 H -0.200 1.200 18 H -0.194 1.194 19 H -0.203 1.203 20 C -0.234 4.234 21 C -0.175 4.175 22 H 0.090 0.910 23 H 0.120 0.880 24 H 0.080 0.920 25 H 0.137 0.863 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.249 0.751 32 H 0.139 0.861 33 H 0.151 0.849 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.130 15.885 -2.767 16.124 hybrid contribution -0.211 -0.701 0.519 0.898 sum -0.340 15.183 -2.248 15.352 Atomic orbital electron populations 1.21750 0.77503 1.04362 1.03234 1.57443 1.15914 1.20941 1.90284 1.21355 0.97401 0.85166 0.96337 1.21997 1.01379 0.97128 0.98091 1.22111 0.99629 0.94683 0.83402 1.86441 1.80966 1.45091 1.28409 1.04684 0.73053 0.72510 0.78416 1.93457 1.45420 1.83610 1.75366 1.93460 1.65553 1.63657 1.75625 1.29892 1.09803 1.05774 1.22755 1.18458 0.87535 0.91541 1.02114 1.20740 1.27068 1.08670 1.00289 0.93615 1.25493 0.94768 1.00456 0.95329 1.70053 1.35803 1.36998 1.09957 0.85869 0.78537 0.80865 0.78772 1.19961 1.19400 1.20251 1.23250 0.96536 1.02007 1.01574 1.22503 1.04141 1.00654 0.90196 0.91012 0.88031 0.92013 0.86315 0.89701 0.93879 0.90930 0.90483 0.92586 0.75143 0.86099 0.84880 0.92556 0.90017 0.88144 0.89236 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.89 10.66 127.77 1.36 3.25 16 2 N -1.01 -29.58 3.12 -539.15 -1.68 -31.25 16 3 C 0.12 2.71 5.24 86.38 0.45 3.16 16 4 C -0.15 -3.52 5.91 30.59 0.18 -3.33 16 5 C 0.08 1.40 7.05 71.98 0.51 1.91 16 6 O -0.60 -11.93 13.66 -148.98 -2.04 -13.97 16 7 S 2.62 106.90 5.13 -56.49 -0.29 106.61 16 8 O -0.99 -43.01 16.74 -127.65 -2.14 -45.14 16 9 O -0.99 -49.18 16.11 -127.65 -2.06 -51.24 16 10 C -0.55 -22.61 6.03 71.98 0.43 -22.18 16 11 C 0.01 0.28 1.33 -52.93 -0.07 0.21 16 12 C -0.53 -29.73 8.07 25.60 0.21 -29.52 16 13 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 14 C 0.04 2.33 5.39 84.66 0.46 2.79 16 15 N -0.89 -49.16 12.94 21.45 0.28 -48.88 16 16 Si 0.93 44.43 29.55 68.60 2.03 46.45 16 17 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 C -0.20 -8.42 9.96 30.62 0.30 -8.11 16 21 C -0.14 -6.04 9.46 30.62 0.29 -5.75 16 22 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.10 1.82 8.07 -2.39 -0.02 1.80 16 24 H 0.06 1.84 6.91 -2.39 -0.02 1.82 16 25 H 0.12 1.65 8.11 -2.39 -0.02 1.63 16 26 H 0.08 1.83 7.61 -2.39 -0.02 1.81 16 27 H 0.04 1.36 7.90 -2.39 -0.02 1.34 16 28 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.40 3.65 9.12 -74.06 -0.68 2.97 16 32 H 0.12 5.27 8.14 -2.39 -0.02 5.25 16 33 H 0.13 4.34 8.09 -2.39 -0.02 4.33 16 34 H 0.27 13.83 8.32 -92.71 -0.77 13.06 16 35 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 36 H 0.10 3.75 8.14 -2.38 -0.02 3.73 16 37 H 0.09 3.50 8.14 -2.38 -0.02 3.49 16 38 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -74.27 332.90 -1.40 -75.67 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.37 Total: 19.32 kcal Atomic # 6 Polarization: -61.70 SS G_CDS: 4.12 Total: -57.58 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -1.40 Total: -80.13 kcal Atomic # 8 Polarization: -104.12 SS G_CDS: -6.23 Total: -110.35 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 106.90 SS G_CDS: -0.29 Total: 106.61 kcal Total: -74.27 -1.40 -75.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565235373.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.363 kcal (2) G-P(sol) polarization free energy of solvation -74.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds