Wall clock time and date at job start Mon Mar 30 2020 01:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47195 * 2 1 4 4 O 1.42901 * 109.46863 * 119.99261 * 2 1 3 5 5 C 1.52998 * 109.47120 * 239.99601 * 2 1 3 6 6 C 1.53007 * 109.46872 * 174.26479 * 5 2 1 7 7 H 1.08998 * 109.87467 * 305.10988 * 6 5 2 8 8 C 1.54322 * 109.88381 * 66.12632 * 6 5 2 9 9 C 1.55146 * 103.10376 * 141.67353 * 8 6 5 10 10 C 1.55129 * 101.48684 * 324.71773 * 9 8 6 11 11 N 1.47023 * 110.00808 * 184.01136 * 6 5 2 12 12 S 1.65596 * 125.65038 * 61.53335 * 11 6 5 13 13 O 1.42104 * 104.27688 * 212.02919 * 12 11 6 14 14 O 1.42099 * 104.27862 * 339.88431 * 12 11 6 15 15 C 1.81393 * 104.45052 * 95.95719 * 12 11 6 16 16 C 1.50694 * 109.47529 * 180.02562 * 15 12 11 17 17 H 1.08008 * 119.99840 * 359.97438 * 16 15 12 18 18 C 1.37878 * 120.00479 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99836 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00283 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47090 * 60.00130 * 20 18 16 22 22 H 1.48503 * 109.47154 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47079 * 299.99690 * 20 18 16 24 24 H 1.08996 * 109.47157 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47146 * 300.00408 * 1 2 3 26 26 H 1.09006 * 109.46976 * 60.00237 * 1 2 3 27 27 H 0.96694 * 114.00625 * 300.00330 * 4 2 1 28 28 H 1.08995 * 109.47139 * 54.26629 * 5 2 1 29 29 H 1.09005 * 109.47033 * 294.26112 * 5 2 1 30 30 H 1.09004 * 110.71948 * 260.12701 * 8 6 5 31 31 H 1.09006 * 110.71813 * 23.21800 * 8 6 5 32 32 H 1.08998 * 111.00962 * 82.66132 * 9 8 6 33 33 H 1.09003 * 111.01040 * 206.50950 * 9 8 6 34 34 H 1.09000 * 110.20444 * 277.95671 * 10 9 8 35 35 H 1.09000 * 110.41882 * 155.70840 * 10 9 8 36 36 H 1.09006 * 109.47209 * 300.00341 * 15 12 11 37 37 H 1.09002 * 109.47375 * 60.00144 * 15 12 11 38 38 H 0.96999 * 120.00108 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0400 -0.7213 -1.2492 6 6 3.5632 -0.5977 -1.3233 7 1 3.8522 0.4525 -1.2822 8 6 4.2099 -1.3661 -0.1516 9 6 5.4697 -1.9993 -0.7988 10 6 4.9545 -2.3223 -2.2260 11 7 4.0572 -1.2038 -2.5683 12 16 3.6690 -0.7124 -4.1013 13 8 3.6969 -1.9072 -4.8700 14 8 2.4659 0.0261 -3.9385 15 6 5.0299 0.3861 -4.5827 16 6 4.7880 0.9045 -5.9768 17 1 3.9040 0.6030 -6.5193 18 6 5.6955 1.7630 -6.5604 19 7 6.7721 2.1298 -5.9001 20 14 5.3959 2.4051 -8.2888 21 1 4.1167 3.1586 -8.3221 22 1 6.5106 3.3034 -8.6833 23 1 5.3226 1.2631 -9.2352 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.7209 -0.2700 1.9980 28 1 1.5953 -0.2703 -2.1362 29 1 1.7630 -1.7744 -1.1992 30 1 4.4902 -0.6826 0.6499 31 1 3.5374 -2.1392 0.2204 32 1 6.2920 -1.2848 -0.8340 33 1 5.7653 -2.9069 -0.2724 34 1 4.4043 -3.2632 -2.2237 35 1 5.7864 -2.3701 -2.9288 36 1 5.0834 1.2243 -3.8879 37 1 5.9691 -0.1667 -4.5582 38 1 7.4108 2.7334 -6.3107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565239025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:16 Heat of formation + Delta-G solvation = -137.033537 kcal Electronic energy + Delta-G solvation = -20828.659360 eV Core-core repulsion = 17604.709655 eV Total energy + Delta-G solvation = -3223.949705 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.89076 -36.97895 -36.14511 -34.98114 -33.34338 -32.25859 -30.49684 -29.51418 -28.98977 -25.44546 -23.52960 -21.81232 -21.39035 -20.44986 -18.13748 -17.47563 -17.11601 -16.32902 -16.02738 -15.26709 -14.86020 -14.59933 -14.21905 -14.10985 -13.41301 -13.28704 -13.01738 -12.53423 -12.47034 -12.44208 -12.08586 -11.85404 -11.80665 -11.43115 -11.20775 -11.12890 -11.05679 -10.89127 -10.80495 -10.66082 -10.54582 -10.40938 -10.20563 -9.94435 -9.85395 -9.33396 -8.70866 -8.35790 -6.33050 -4.44104 1.30288 3.23317 3.25461 3.30225 3.53731 4.23794 4.30049 4.68219 4.78003 4.84959 4.91595 5.02024 5.05735 5.24437 5.27657 5.32816 5.52093 5.64066 5.70955 5.75568 5.86481 5.96354 6.04021 6.06512 6.19602 6.20947 6.31890 6.43654 6.58530 6.62481 6.66556 6.85336 7.00997 7.43645 7.64942 7.75438 8.57964 9.23511 10.78643 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024059 B = 0.005392 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.550406 B = 5191.536175 C = 5589.977571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.057 0.943 4 O -0.563 6.563 5 C -0.147 4.147 6 C 0.159 3.841 7 H 0.068 0.932 8 C -0.106 4.106 9 C -0.137 4.137 10 C 0.125 3.875 11 N -1.017 6.017 12 S 2.596 3.404 13 O -0.978 6.978 14 O -0.975 6.975 15 C -0.418 4.418 16 C -0.535 4.535 17 H 0.068 0.932 18 C 0.077 3.923 19 N -0.879 5.879 20 Si 0.904 3.096 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.269 1.269 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.369 0.631 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.267 -4.371 14.165 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.046 3.954 3 H 0.075 0.925 4 O -0.369 6.369 5 C -0.185 4.185 6 C 0.053 3.947 7 H 0.086 0.914 8 C -0.145 4.145 9 C -0.176 4.176 10 C -0.001 4.001 11 N -0.853 5.853 12 S 2.698 3.302 13 O -0.969 6.969 14 O -0.966 6.966 15 C -0.554 4.554 16 C -0.575 4.575 17 H 0.086 0.914 18 C -0.130 4.130 19 N -0.515 5.515 20 Si 0.730 3.270 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.194 1.194 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.215 0.785 28 H 0.131 0.869 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.648 -4.934 13.152 15.140 hybrid contribution 0.257 1.093 -0.307 1.164 sum -5.392 -3.841 12.845 14.451 Atomic orbital electron populations 1.22492 0.96704 1.02640 1.02369 1.21743 0.92531 0.95436 0.85678 0.92548 1.86627 1.76829 1.57688 1.15719 1.22493 0.96259 1.02011 0.97756 1.21159 0.92793 0.96928 0.83845 0.91379 1.22585 0.95952 0.99834 0.96107 1.22899 0.98243 1.01063 0.95400 1.21869 0.92512 0.89391 0.96338 1.59001 1.61076 1.43477 1.21706 1.05604 0.77878 0.75705 0.71000 1.93470 1.88191 1.46556 1.68639 1.93393 1.44478 1.74391 1.84361 1.27747 1.11858 1.09616 1.06197 1.20293 1.09271 1.30799 0.97119 0.91370 1.24928 0.94340 0.95048 0.98641 1.69948 1.10586 1.33115 1.37841 0.86440 0.78346 0.79175 0.83059 1.19412 1.20682 1.19404 0.92010 0.92711 0.91233 0.78517 0.86937 0.91216 0.90763 0.90156 0.90847 0.90659 0.92043 0.91004 0.89825 0.89932 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.53 37.16 0.35 -1.54 16 2 C 0.11 1.23 3.56 -26.73 -0.10 1.13 16 3 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 4 O -0.56 -5.77 10.58 -35.23 -0.37 -6.15 16 5 C -0.15 -2.20 4.51 -26.73 -0.12 -2.32 16 6 C 0.16 2.45 3.05 -66.95 -0.20 2.25 16 7 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 8 C -0.11 -1.34 4.83 -24.90 -0.12 -1.46 16 9 C -0.14 -1.67 7.11 -24.47 -0.17 -1.85 16 10 C 0.12 1.88 6.97 -2.41 -0.02 1.87 16 11 N -1.02 -18.02 3.32 -104.29 -0.35 -18.36 16 12 S 2.60 57.12 5.53 -107.50 -0.59 56.52 16 13 O -0.98 -23.95 17.70 -57.54 -1.02 -24.97 16 14 O -0.98 -22.62 14.98 -57.54 -0.86 -23.48 16 15 C -0.42 -10.35 5.93 36.00 0.21 -10.13 16 16 C -0.54 -14.99 9.13 -34.44 -0.31 -15.31 16 17 H 0.07 1.87 7.71 -52.48 -0.40 1.47 16 18 C 0.08 2.13 5.46 -17.82 -0.10 2.04 16 19 N -0.88 -25.04 13.29 55.43 0.74 -24.30 16 20 Si 0.90 21.08 29.54 -169.99 -5.02 16.05 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.37 2.26 9.08 45.56 0.41 2.68 16 28 H 0.11 1.96 5.50 -51.93 -0.29 1.68 16 29 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 30 H 0.07 0.85 7.98 -51.93 -0.41 0.44 16 31 H 0.08 1.02 6.96 -51.93 -0.36 0.66 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 2.06 8.14 -51.92 -0.42 1.64 16 37 H 0.08 2.04 8.14 -51.92 -0.42 1.62 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -33.21 319.49 -8.49 -41.71 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.26 Total: 3.49 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: -0.57 Total: -25.32 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.39 Total: -42.67 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -2.25 Total: -54.60 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 57.12 SS G_CDS: -0.59 Total: 56.52 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.21 -8.49 -41.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565239025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.328 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds