Wall clock time and date at job start Mon Mar 30 2020 01:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47195 * 2 1 4 4 O 1.42901 * 109.46863 * 119.99261 * 2 1 3 5 5 C 1.52998 * 109.47120 * 239.99601 * 2 1 3 6 6 C 1.53007 * 109.46872 * 174.26479 * 5 2 1 7 7 H 1.08998 * 109.87467 * 305.10988 * 6 5 2 8 8 C 1.54322 * 109.88381 * 66.12632 * 6 5 2 9 9 C 1.55146 * 103.10376 * 141.67353 * 8 6 5 10 10 C 1.55129 * 101.48684 * 324.71773 * 9 8 6 11 11 N 1.47023 * 110.00808 * 184.01136 * 6 5 2 12 12 S 1.65596 * 125.65038 * 61.53335 * 11 6 5 13 13 O 1.42104 * 104.27688 * 212.02919 * 12 11 6 14 14 O 1.42099 * 104.27862 * 339.88431 * 12 11 6 15 15 C 1.81393 * 104.45052 * 95.95719 * 12 11 6 16 16 C 1.50694 * 109.47529 * 180.02562 * 15 12 11 17 17 H 1.08008 * 119.99840 * 359.97438 * 16 15 12 18 18 C 1.37878 * 120.00479 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99836 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00283 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47090 * 60.00130 * 20 18 16 22 22 H 1.48503 * 109.47154 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47079 * 299.99690 * 20 18 16 24 24 H 1.08996 * 109.47157 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47146 * 300.00408 * 1 2 3 26 26 H 1.09006 * 109.46976 * 60.00237 * 1 2 3 27 27 H 0.96694 * 114.00625 * 300.00330 * 4 2 1 28 28 H 1.08995 * 109.47139 * 54.26629 * 5 2 1 29 29 H 1.09005 * 109.47033 * 294.26112 * 5 2 1 30 30 H 1.09004 * 110.71948 * 260.12701 * 8 6 5 31 31 H 1.09006 * 110.71813 * 23.21800 * 8 6 5 32 32 H 1.08998 * 111.00962 * 82.66132 * 9 8 6 33 33 H 1.09003 * 111.01040 * 206.50950 * 9 8 6 34 34 H 1.09000 * 110.20444 * 277.95671 * 10 9 8 35 35 H 1.09000 * 110.41882 * 155.70840 * 10 9 8 36 36 H 1.09006 * 109.47209 * 300.00341 * 15 12 11 37 37 H 1.09002 * 109.47375 * 60.00144 * 15 12 11 38 38 H 0.96999 * 120.00108 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0400 -0.7213 -1.2492 6 6 3.5632 -0.5977 -1.3233 7 1 3.8522 0.4525 -1.2822 8 6 4.2099 -1.3661 -0.1516 9 6 5.4697 -1.9993 -0.7988 10 6 4.9545 -2.3223 -2.2260 11 7 4.0572 -1.2038 -2.5683 12 16 3.6690 -0.7124 -4.1013 13 8 3.6969 -1.9072 -4.8700 14 8 2.4659 0.0261 -3.9385 15 6 5.0299 0.3861 -4.5827 16 6 4.7880 0.9045 -5.9768 17 1 3.9040 0.6030 -6.5193 18 6 5.6955 1.7630 -6.5604 19 7 6.7721 2.1298 -5.9001 20 14 5.3959 2.4051 -8.2888 21 1 4.1167 3.1586 -8.3221 22 1 6.5106 3.3034 -8.6833 23 1 5.3226 1.2631 -9.2352 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.7209 -0.2700 1.9980 28 1 1.5953 -0.2703 -2.1362 29 1 1.7630 -1.7744 -1.1992 30 1 4.4902 -0.6826 0.6499 31 1 3.5374 -2.1392 0.2204 32 1 6.2920 -1.2848 -0.8340 33 1 5.7653 -2.9069 -0.2724 34 1 4.4043 -3.2632 -2.2237 35 1 5.7864 -2.3701 -2.9288 36 1 5.0834 1.2243 -3.8879 37 1 5.9691 -0.1667 -4.5582 38 1 7.4108 2.7334 -6.3107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565239025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:15 Heat of formation + Delta-G solvation = -162.559988 kcal Electronic energy + Delta-G solvation = -20829.766270 eV Core-core repulsion = 17604.709655 eV Total energy + Delta-G solvation = -3225.056615 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.02639 -38.07394 -37.86272 -36.86250 -35.43476 -33.24796 -31.74935 -31.06151 -30.49577 -26.53219 -25.58252 -23.03250 -22.43923 -21.57282 -19.71348 -19.17706 -18.36616 -17.93444 -17.55959 -17.00000 -16.47101 -16.02907 -15.54682 -15.19322 -14.74323 -14.52413 -14.38444 -14.27658 -14.02124 -13.58582 -13.47253 -13.35647 -13.08792 -13.00408 -12.83623 -12.73958 -12.67555 -12.55361 -12.41826 -11.89907 -11.84615 -11.74140 -11.49487 -11.33072 -11.16383 -10.80371 -10.77531 -9.80843 -8.43512 -6.62869 -0.48665 1.36069 1.39605 1.47873 1.93038 2.29985 2.89472 3.00889 3.27622 3.48492 3.64766 3.83102 3.94148 4.14895 4.22478 4.33964 4.45556 4.53193 4.62864 4.67659 4.70326 4.76105 4.93341 4.98102 5.06716 5.08035 5.13865 5.20855 5.28662 5.29552 5.36459 5.43531 5.55205 5.66803 5.69092 6.47322 7.05089 7.09047 8.68941 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024059 B = 0.005392 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.550406 B = 5191.536175 C = 5589.977571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.113 3.887 3 H 0.060 0.940 4 O -0.568 6.568 5 C -0.149 4.149 6 C 0.147 3.853 7 H 0.065 0.935 8 C -0.093 4.093 9 C -0.127 4.127 10 C 0.109 3.891 11 N -1.016 6.016 12 S 2.630 3.370 13 O -1.004 7.004 14 O -0.989 6.989 15 C -0.431 4.431 16 C -0.570 4.570 17 H 0.063 0.937 18 C 0.026 3.974 19 N -0.908 5.908 20 Si 0.964 3.036 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.263 1.263 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.390 0.610 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.427 -4.533 15.636 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.054 3.946 3 H 0.078 0.922 4 O -0.376 6.376 5 C -0.188 4.188 6 C 0.041 3.959 7 H 0.083 0.917 8 C -0.132 4.132 9 C -0.165 4.165 10 C -0.016 4.016 11 N -0.854 5.854 12 S 2.731 3.269 13 O -0.994 6.994 14 O -0.980 6.980 15 C -0.565 4.565 16 C -0.609 4.609 17 H 0.082 0.918 18 C -0.177 4.177 19 N -0.544 5.544 20 Si 0.786 3.214 21 H -0.186 1.186 22 H -0.192 1.192 23 H -0.187 1.187 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.239 0.761 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.801 -5.081 14.631 16.539 hybrid contribution 0.305 1.097 -0.645 1.309 sum -5.496 -3.983 13.986 15.546 Atomic orbital electron populations 1.22462 0.95695 1.02665 1.03097 1.21519 0.93199 0.94943 0.84983 0.92167 1.86555 1.76921 1.57866 1.16266 1.22428 0.95865 1.01903 0.98607 1.21503 0.93422 0.97247 0.83717 0.91683 1.22528 0.95751 0.99833 0.95058 1.22909 0.97928 1.02472 0.93241 1.22220 0.92191 0.88794 0.98391 1.58663 1.61688 1.44108 1.20990 1.04262 0.76530 0.74497 0.71657 1.93427 1.88275 1.47150 1.70576 1.93379 1.44678 1.74868 1.85062 1.27819 1.13352 1.10262 1.05036 1.20722 1.09585 1.31717 0.98849 0.91846 1.25855 0.93984 0.95052 1.02822 1.70026 1.11268 1.33555 1.39575 0.85514 0.78913 0.78953 0.78050 1.18597 1.19160 1.18722 0.92334 0.90082 0.92430 0.76055 0.89902 0.91608 0.88970 0.89744 0.90661 0.87600 0.91181 0.91392 0.90563 0.90761 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.43 9.53 71.98 0.69 -2.74 16 2 C 0.11 2.44 3.56 30.59 0.11 2.55 16 3 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 4 O -0.57 -9.94 10.58 -148.98 -1.58 -11.51 16 5 C -0.15 -4.40 4.51 30.60 0.14 -4.27 16 6 C 0.15 4.39 3.05 45.34 0.14 4.52 16 7 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 8 C -0.09 -2.09 4.83 31.78 0.15 -1.94 16 9 C -0.13 -2.76 7.11 32.06 0.23 -2.53 16 10 C 0.11 3.18 6.97 86.93 0.61 3.79 16 11 N -1.02 -35.95 3.32 -483.86 -1.61 -37.56 16 12 S 2.63 118.66 5.53 -56.49 -0.31 118.34 16 13 O -1.00 -50.16 17.70 -127.65 -2.26 -52.42 16 14 O -0.99 -47.10 14.98 -127.65 -1.91 -49.01 16 15 C -0.43 -22.08 5.93 71.23 0.42 -21.66 16 16 C -0.57 -32.74 9.13 25.60 0.23 -32.51 16 17 H 0.06 3.58 7.71 -2.91 -0.02 3.56 16 18 C 0.03 1.47 5.46 84.65 0.46 1.94 16 19 N -0.91 -52.38 13.29 21.45 0.28 -52.10 16 20 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 26 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.39 3.37 9.08 -74.06 -0.67 2.70 16 28 H 0.08 2.95 5.50 -2.39 -0.01 2.94 16 29 H 0.07 1.95 8.05 -2.38 -0.02 1.93 16 30 H 0.09 1.80 7.98 -2.38 -0.02 1.78 16 31 H 0.08 1.88 6.96 -2.38 -0.02 1.87 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.08 3.92 8.14 -2.39 -0.02 3.90 16 37 H 0.07 3.83 8.14 -2.39 -0.02 3.81 16 38 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -71.80 319.49 -1.81 -73.60 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.37 Total: 18.37 kcal Atomic # 6 Polarization: -56.03 SS G_CDS: 3.18 Total: -52.85 kcal Atomic # 7 Polarization: -88.33 SS G_CDS: -1.32 Total: -89.66 kcal Atomic # 8 Polarization: -107.20 SS G_CDS: -5.75 Total: -112.95 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 118.66 SS G_CDS: -0.31 Total: 118.34 kcal Total: -71.80 -1.81 -73.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565239025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.957 kcal (2) G-P(sol) polarization free energy of solvation -71.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds