Wall clock time and date at job start Mon Mar 30 2020 01:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47229 * 2 1 4 4 O 1.42894 * 109.47694 * 239.99242 * 2 1 3 5 5 C 1.53001 * 109.46745 * 119.98920 * 2 1 3 6 6 C 1.53002 * 109.47226 * 184.23691 * 5 2 1 7 7 H 1.09005 * 109.87556 * 306.27558 * 6 5 2 8 8 C 1.54322 * 110.01075 * 67.37230 * 6 5 2 9 9 C 1.55163 * 102.94074 * 141.68362 * 8 6 5 10 10 C 1.54901 * 101.57974 * 324.49861 * 9 8 6 11 11 N 1.47023 * 109.88388 * 185.26325 * 6 5 2 12 12 S 1.65597 * 125.65340 * 61.52079 * 11 6 5 13 13 O 1.42103 * 104.27453 * 20.87536 * 12 11 6 14 14 O 1.42097 * 104.27787 * 148.73382 * 12 11 6 15 15 C 1.81398 * 104.45009 * 264.80815 * 12 11 6 16 16 C 1.50694 * 109.47042 * 184.98865 * 15 12 11 17 17 H 1.07998 * 120.00272 * 0.02562 * 16 15 12 18 18 C 1.37885 * 120.00164 * 179.97438 * 16 15 12 19 19 N 1.31516 * 119.99646 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00265 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46874 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47152 * 119.99500 * 20 18 16 23 23 H 1.48497 * 109.47089 * 239.99880 * 20 18 16 24 24 H 1.08997 * 109.47424 * 300.00724 * 1 2 3 25 25 H 1.09003 * 109.46573 * 60.00949 * 1 2 3 26 26 H 1.08998 * 109.46838 * 180.02562 * 1 2 3 27 27 H 0.96702 * 113.99832 * 295.03824 * 4 2 1 28 28 H 1.09001 * 109.47126 * 64.24137 * 5 2 1 29 29 H 1.09001 * 109.47601 * 304.24030 * 5 2 1 30 30 H 1.09004 * 110.72114 * 23.32190 * 8 6 5 31 31 H 1.08998 * 110.72678 * 260.04877 * 8 6 5 32 32 H 1.09009 * 111.00018 * 206.42446 * 9 8 6 33 33 H 1.08994 * 111.00199 * 82.57742 * 9 8 6 34 34 H 1.09005 * 110.36260 * 155.85005 * 10 9 8 35 35 H 1.09005 * 110.37126 * 278.17070 * 10 9 8 36 36 H 1.09003 * 109.47111 * 304.98952 * 15 12 11 37 37 H 1.08997 * 109.47397 * 64.98784 * 15 12 11 38 38 H 0.96999 * 119.99843 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1666 5 6 2.0399 -0.7210 1.2494 6 6 3.5662 -0.6295 1.3039 7 1 3.9930 -0.9949 0.3699 8 6 3.9993 0.8324 1.5423 9 6 5.2108 0.6841 2.5004 10 6 4.7771 -0.5259 3.3649 11 7 4.0749 -1.4248 2.4310 12 16 3.8905 -3.0596 2.6196 13 8 3.6206 -3.5355 1.3081 14 8 5.0582 -3.4655 3.3203 15 6 2.4239 -3.2311 3.6733 16 6 2.2218 -4.6836 4.0203 17 1 2.9072 -5.4290 3.6448 18 6 1.1622 -5.0609 4.8179 19 7 0.3284 -4.1530 5.2763 20 14 0.9120 -6.8612 5.2486 21 1 1.9801 -7.6749 4.6143 22 1 0.9711 -7.0304 6.7227 23 1 -0.4136 -7.3094 4.7516 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.7851 -1.6146 -1.1953 28 1 1.7399 -1.7683 1.2124 29 1 1.6158 -0.2528 2.1377 30 1 3.1988 1.3992 2.0177 31 1 4.3028 1.3023 0.6067 32 1 5.3361 1.5771 3.1129 33 1 6.1224 0.4615 1.9459 34 1 5.6507 -1.0236 3.7860 35 1 4.1039 -0.2029 4.1591 36 1 2.5644 -2.6552 4.5880 37 1 1.5485 -2.8595 3.1409 38 1 -0.4172 -4.4185 5.8372 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565239028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:19 Heat of formation + Delta-G solvation = -141.755526 kcal Electronic energy + Delta-G solvation = -21010.626442 eV Core-core repulsion = 17786.471976 eV Total energy + Delta-G solvation = -3224.154466 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.01160 -37.00916 -36.15140 -34.99004 -33.38310 -32.08362 -30.67427 -29.50966 -29.04475 -25.47474 -23.58711 -22.06111 -21.64716 -20.47526 -18.15526 -17.22771 -16.71290 -16.33035 -15.74531 -15.49829 -15.41627 -14.76432 -14.28590 -13.95714 -13.56509 -13.42214 -13.03453 -12.72628 -12.51260 -12.32283 -12.08020 -11.91652 -11.62866 -11.44388 -11.24443 -11.15881 -11.06045 -10.96828 -10.94794 -10.78848 -10.64778 -10.55850 -10.44445 -9.98754 -9.81003 -9.35025 -8.75148 -8.39417 -6.36861 -4.47487 1.26780 3.17057 3.24282 3.31475 3.49399 4.21030 4.45732 4.60677 4.64942 4.76770 4.91459 4.98781 5.04818 5.15053 5.18728 5.29106 5.46451 5.55959 5.58660 5.75600 5.77874 5.85146 5.93693 5.94697 5.99685 6.15161 6.23410 6.29574 6.35813 6.54682 6.59171 6.78960 6.95367 7.41587 7.71615 7.77241 8.54902 9.20388 10.74732 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.006573 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.243666 B = 4258.788710 C = 5031.420348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.109 3.891 3 H 0.097 0.903 4 O -0.567 6.567 5 C -0.180 4.180 6 C 0.159 3.841 7 H 0.082 0.918 8 C -0.124 4.124 9 C -0.129 4.129 10 C 0.115 3.885 11 N -1.018 6.018 12 S 2.594 3.406 13 O -0.976 6.976 14 O -0.978 6.978 15 C -0.419 4.419 16 C -0.535 4.535 17 H 0.069 0.931 18 C 0.077 3.923 19 N -0.878 5.878 20 Si 0.904 3.096 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.381 0.619 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.355 11.788 -6.116 13.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.050 3.950 3 H 0.115 0.885 4 O -0.373 6.373 5 C -0.219 4.219 6 C 0.053 3.947 7 H 0.100 0.900 8 C -0.163 4.163 9 C -0.168 4.168 10 C -0.010 4.010 11 N -0.853 5.853 12 S 2.696 3.304 13 O -0.967 6.967 14 O -0.968 6.968 15 C -0.554 4.554 16 C -0.574 4.574 17 H 0.087 0.913 18 C -0.130 4.130 19 N -0.514 5.514 20 Si 0.729 3.271 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.229 0.771 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.036 11.676 -6.539 13.722 hybrid contribution -1.106 -1.126 0.967 1.850 sum 1.930 10.550 -5.573 12.087 Atomic orbital electron populations 1.22504 0.96553 1.02982 1.02342 1.21791 0.92690 0.96409 0.84137 0.88485 1.86490 1.80886 1.27215 1.42705 1.22964 0.96513 1.02816 0.99600 1.21130 0.92603 0.91065 0.89938 0.89971 1.22714 0.98111 0.95551 0.99953 1.22745 0.98247 0.97817 0.97943 1.21941 0.96481 0.90544 0.92054 1.59035 1.69475 1.25504 1.31276 1.05642 0.78265 0.70575 0.75875 1.93457 1.87260 1.77995 1.38015 1.93459 1.47659 1.79639 1.76083 1.27816 1.12255 1.05786 1.09592 1.20382 1.13856 0.88825 1.34350 0.91269 1.24926 0.94842 0.98702 0.94491 1.69961 1.14829 1.33635 1.32976 0.86329 0.78660 0.83478 0.78589 1.18954 1.20286 1.20304 0.91578 0.92064 0.91970 0.77128 0.90451 0.89988 0.90734 0.90505 0.90419 0.90889 0.90215 0.91861 0.89929 0.89787 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 9.56 37.16 0.36 -1.68 16 2 C 0.11 1.31 3.51 -26.73 -0.09 1.21 16 3 H 0.10 1.02 7.37 -51.93 -0.38 0.64 16 4 O -0.57 -7.52 12.77 -35.23 -0.45 -7.97 16 5 C -0.18 -2.53 4.39 -26.73 -0.12 -2.65 16 6 C 0.16 2.33 2.68 -66.95 -0.18 2.15 16 7 H 0.08 1.30 7.66 -51.93 -0.40 0.91 16 8 C -0.12 -1.38 5.56 -24.89 -0.14 -1.52 16 9 C -0.13 -1.42 7.09 -24.58 -0.17 -1.59 16 10 C 0.12 1.65 7.11 -2.53 -0.02 1.63 16 11 N -1.02 -17.49 3.32 -104.41 -0.35 -17.84 16 12 S 2.59 56.88 5.06 -107.50 -0.54 56.34 16 13 O -0.98 -22.98 17.01 -57.54 -0.98 -23.96 16 14 O -0.98 -23.96 17.38 -57.54 -1.00 -24.96 16 15 C -0.42 -10.12 5.93 36.00 0.21 -9.91 16 16 C -0.53 -14.78 9.13 -34.44 -0.31 -15.10 16 17 H 0.07 1.90 7.71 -52.49 -0.40 1.49 16 18 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 19 N -0.88 -24.53 13.29 55.43 0.74 -23.80 16 20 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.38 4.48 9.03 45.56 0.41 4.89 16 28 H 0.08 1.26 6.61 -51.93 -0.34 0.92 16 29 H 0.08 1.09 8.02 -51.93 -0.42 0.68 16 30 H 0.07 0.73 7.77 -51.93 -0.40 0.33 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.18 7.71 -51.93 -0.40 0.78 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.99 8.14 -51.92 -0.42 1.57 16 37 H 0.08 2.00 7.48 -51.93 -0.39 1.61 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 322.88 15.07 4.87 4.87 Total: -1.00 -33.17 322.88 -8.54 -41.71 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.24 Total: 5.17 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -0.56 Total: -25.44 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.39 Total: -41.64 kcal Atomic # 8 Polarization: -54.46 SS G_CDS: -2.43 Total: -56.89 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 56.88 SS G_CDS: -0.54 Total: 56.34 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.17 -8.54 -41.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565239028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.044 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds