Wall clock time and date at job start Mon Mar 30 2020 01:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47229 * 2 1 4 4 O 1.42894 * 109.47694 * 239.99242 * 2 1 3 5 5 C 1.53001 * 109.46745 * 119.98920 * 2 1 3 6 6 C 1.53002 * 109.47226 * 184.23691 * 5 2 1 7 7 H 1.09005 * 109.87556 * 306.27558 * 6 5 2 8 8 C 1.54322 * 110.01075 * 67.37230 * 6 5 2 9 9 C 1.55163 * 102.94074 * 141.68362 * 8 6 5 10 10 C 1.54901 * 101.57974 * 324.49861 * 9 8 6 11 11 N 1.47023 * 109.88388 * 185.26325 * 6 5 2 12 12 S 1.65597 * 125.65340 * 61.52079 * 11 6 5 13 13 O 1.42103 * 104.27453 * 20.87536 * 12 11 6 14 14 O 1.42097 * 104.27787 * 148.73382 * 12 11 6 15 15 C 1.81398 * 104.45009 * 264.80815 * 12 11 6 16 16 C 1.50694 * 109.47042 * 184.98865 * 15 12 11 17 17 H 1.07998 * 120.00272 * 0.02562 * 16 15 12 18 18 C 1.37885 * 120.00164 * 179.97438 * 16 15 12 19 19 N 1.31516 * 119.99646 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00265 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46874 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47152 * 119.99500 * 20 18 16 23 23 H 1.48497 * 109.47089 * 239.99880 * 20 18 16 24 24 H 1.08997 * 109.47424 * 300.00724 * 1 2 3 25 25 H 1.09003 * 109.46573 * 60.00949 * 1 2 3 26 26 H 1.08998 * 109.46838 * 180.02562 * 1 2 3 27 27 H 0.96702 * 113.99832 * 295.03824 * 4 2 1 28 28 H 1.09001 * 109.47126 * 64.24137 * 5 2 1 29 29 H 1.09001 * 109.47601 * 304.24030 * 5 2 1 30 30 H 1.09004 * 110.72114 * 23.32190 * 8 6 5 31 31 H 1.08998 * 110.72678 * 260.04877 * 8 6 5 32 32 H 1.09009 * 111.00018 * 206.42446 * 9 8 6 33 33 H 1.08994 * 111.00199 * 82.57742 * 9 8 6 34 34 H 1.09005 * 110.36260 * 155.85005 * 10 9 8 35 35 H 1.09005 * 110.37126 * 278.17070 * 10 9 8 36 36 H 1.09003 * 109.47111 * 304.98952 * 15 12 11 37 37 H 1.08997 * 109.47397 * 64.98784 * 15 12 11 38 38 H 0.96999 * 119.99843 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1666 5 6 2.0399 -0.7210 1.2494 6 6 3.5662 -0.6295 1.3039 7 1 3.9930 -0.9949 0.3699 8 6 3.9993 0.8324 1.5423 9 6 5.2108 0.6841 2.5004 10 6 4.7771 -0.5259 3.3649 11 7 4.0749 -1.4248 2.4310 12 16 3.8905 -3.0596 2.6196 13 8 3.6206 -3.5355 1.3081 14 8 5.0582 -3.4655 3.3203 15 6 2.4239 -3.2311 3.6733 16 6 2.2218 -4.6836 4.0203 17 1 2.9072 -5.4290 3.6448 18 6 1.1622 -5.0609 4.8179 19 7 0.3284 -4.1530 5.2763 20 14 0.9120 -6.8612 5.2486 21 1 1.9801 -7.6749 4.6143 22 1 0.9711 -7.0304 6.7227 23 1 -0.4136 -7.3094 4.7516 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.7851 -1.6146 -1.1953 28 1 1.7399 -1.7683 1.2124 29 1 1.6158 -0.2528 2.1377 30 1 3.1988 1.3992 2.0177 31 1 4.3028 1.3023 0.6067 32 1 5.3361 1.5771 3.1129 33 1 6.1224 0.4615 1.9459 34 1 5.6507 -1.0236 3.7860 35 1 4.1039 -0.2029 4.1591 36 1 2.5644 -2.6552 4.5880 37 1 1.5485 -2.8595 3.1409 38 1 -0.4172 -4.4185 5.8372 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565239028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:19 Heat of formation + Delta-G solvation = -167.717337 kcal Electronic energy + Delta-G solvation = -21011.752231 eV Core-core repulsion = 17786.471976 eV Total energy + Delta-G solvation = -3225.280254 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11670 -38.14873 -37.92210 -36.87479 -35.44823 -33.14222 -31.83541 -31.06027 -30.51421 -26.52581 -25.61498 -23.15280 -22.73603 -21.56513 -19.70880 -19.09260 -18.32593 -17.68975 -17.23888 -16.88316 -16.75310 -16.23516 -16.04242 -15.06305 -14.82388 -14.56147 -14.46638 -14.16463 -14.07723 -13.69481 -13.47587 -13.30885 -13.11179 -13.02409 -12.82783 -12.77706 -12.69907 -12.59766 -12.43800 -12.00649 -11.82735 -11.75108 -11.51485 -11.48748 -11.25825 -10.94673 -10.81428 -9.78513 -8.44824 -6.63368 -0.50109 1.34582 1.35335 1.49549 1.92119 2.28761 2.88282 3.00829 3.25716 3.47307 3.58013 3.82509 3.94820 4.05861 4.20349 4.27034 4.47496 4.49779 4.55741 4.64942 4.68424 4.76807 4.89173 4.94308 4.97831 5.02797 5.09587 5.16344 5.23880 5.26592 5.32227 5.35661 5.48852 5.64379 5.68419 6.46369 6.79543 7.08381 8.67535 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.006573 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.243666 B = 4258.788710 C = 5031.420348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.113 3.887 3 H 0.121 0.879 4 O -0.578 6.578 5 C -0.180 4.180 6 C 0.149 3.851 7 H 0.067 0.933 8 C -0.115 4.115 9 C -0.118 4.118 10 C 0.100 3.900 11 N -1.017 6.017 12 S 2.624 3.376 13 O -0.997 6.997 14 O -1.006 7.006 15 C -0.425 4.425 16 C -0.570 4.570 17 H 0.060 0.940 18 C 0.029 3.971 19 N -0.904 5.904 20 Si 0.962 3.038 21 H -0.265 1.265 22 H -0.265 1.265 23 H -0.264 1.264 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.383 0.617 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 13.474 -6.249 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.054 3.946 3 H 0.138 0.862 4 O -0.386 6.386 5 C -0.219 4.219 6 C 0.044 3.956 7 H 0.085 0.915 8 C -0.154 4.154 9 C -0.157 4.157 10 C -0.025 4.025 11 N -0.855 5.855 12 S 2.725 3.275 13 O -0.988 6.988 14 O -0.997 6.997 15 C -0.559 4.559 16 C -0.609 4.609 17 H 0.078 0.922 18 C -0.175 4.175 19 N -0.540 5.540 20 Si 0.784 3.216 21 H -0.189 1.189 22 H -0.190 1.190 23 H -0.189 1.189 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.232 0.768 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.015 13.355 -6.663 15.227 hybrid contribution -1.086 -1.573 0.989 2.152 sum 1.929 11.782 -5.674 13.219 Atomic orbital electron populations 1.22488 0.95831 1.02462 1.03406 1.21890 0.93251 0.96889 0.82540 0.86161 1.86466 1.81201 1.27624 1.43269 1.22983 0.96324 1.01356 1.01259 1.21423 0.92821 0.93158 0.88244 0.91465 1.22751 0.98671 0.92721 1.01255 1.22762 0.98082 0.97212 0.97610 1.22313 0.96223 0.91312 0.92658 1.58661 1.69657 1.24363 1.32803 1.04353 0.76748 0.71773 0.74599 1.93417 1.87271 1.79593 1.38485 1.93413 1.48250 1.81304 1.76701 1.27831 1.13987 1.04085 1.10041 1.20766 1.14394 0.90494 1.35225 0.92186 1.25794 0.94413 1.03115 0.94156 1.70023 1.15217 1.35505 1.33267 0.85447 0.78986 0.78276 0.78911 1.18946 1.18984 1.18918 0.90624 0.90853 0.93328 0.76805 0.93566 0.89252 0.88712 0.88393 0.87034 0.90759 0.91277 0.90602 0.90527 0.90169 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.77 9.56 71.98 0.69 -3.08 16 2 C 0.11 2.52 3.51 30.59 0.11 2.63 16 3 H 0.12 2.13 7.37 -2.39 -0.02 2.11 16 4 O -0.58 -14.83 12.77 -148.98 -1.90 -16.73 16 5 C -0.18 -4.95 4.39 30.60 0.13 -4.81 16 6 C 0.15 4.19 2.68 45.34 0.12 4.31 16 7 H 0.07 2.09 7.66 -2.38 -0.02 2.07 16 8 C -0.12 -2.14 5.56 31.78 0.18 -1.97 16 9 C -0.12 -2.20 7.09 31.99 0.23 -1.97 16 10 C 0.10 2.71 7.11 86.85 0.62 3.33 16 11 N -1.02 -34.66 3.32 -484.26 -1.61 -36.27 16 12 S 2.62 118.21 5.06 -56.49 -0.29 117.92 16 13 O -1.00 -48.36 17.01 -127.65 -2.17 -50.53 16 14 O -1.01 -50.50 17.38 -127.65 -2.22 -52.72 16 15 C -0.43 -21.28 5.93 71.23 0.42 -20.86 16 16 C -0.57 -32.41 9.13 25.60 0.23 -32.18 16 17 H 0.06 3.41 7.71 -2.91 -0.02 3.39 16 18 C 0.03 1.60 5.46 84.66 0.46 2.06 16 19 N -0.90 -50.97 13.29 21.45 0.28 -50.69 16 20 Si 0.96 42.82 29.54 68.60 2.03 44.85 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.38 9.16 9.03 -74.06 -0.67 8.49 16 28 H 0.05 1.55 6.61 -2.39 -0.02 1.53 16 29 H 0.09 2.28 8.02 -2.39 -0.02 2.26 16 30 H 0.09 1.43 7.77 -2.38 -0.02 1.41 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 2.02 7.71 -2.38 -0.02 2.00 16 35 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.08 3.83 8.14 -2.39 -0.02 3.81 16 37 H 0.08 3.99 7.48 -2.39 -0.02 3.97 16 38 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -71.97 322.88 -2.30 -74.27 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.38 Total: 22.44 kcal Atomic # 6 Polarization: -55.73 SS G_CDS: 3.19 Total: -52.54 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -1.32 Total: -86.96 kcal Atomic # 8 Polarization: -113.69 SS G_CDS: -6.29 Total: -119.98 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 118.21 SS G_CDS: -0.29 Total: 117.92 kcal Total: -71.97 -2.30 -74.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565239028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.447 kcal (2) G-P(sol) polarization free energy of solvation -71.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds