Wall clock time and date at job start Mon Mar 30 2020 01:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47276 * 2 1 4 4 O 1.42898 * 109.47054 * 119.99960 * 2 1 3 5 5 C 1.52998 * 109.47205 * 239.99732 * 2 1 3 6 6 C 1.53002 * 109.47175 * 174.86635 * 5 2 1 7 7 H 1.08993 * 109.87219 * 56.53799 * 6 5 2 8 8 C 1.54321 * 109.88131 * 295.52394 * 6 5 2 9 9 C 1.55158 * 102.94337 * 218.38654 * 8 6 5 10 10 C 1.54916 * 101.57731 * 35.50680 * 9 8 6 11 11 N 1.47019 * 109.88313 * 177.71651 * 6 5 2 12 12 S 1.65606 * 125.64879 * 298.33889 * 11 6 5 13 13 O 1.42092 * 104.27520 * 210.96968 * 12 11 6 14 14 O 1.42101 * 104.27467 * 338.82625 * 12 11 6 15 15 C 1.81397 * 104.45036 * 94.89563 * 12 11 6 16 16 C 1.50693 * 109.47217 * 177.17265 * 15 12 11 17 17 H 1.07996 * 120.00303 * 0.02562 * 16 15 12 18 18 C 1.37883 * 120.00312 * 179.97438 * 16 15 12 19 19 N 1.31511 * 120.00208 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99752 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47434 * 89.99917 * 20 18 16 22 22 H 1.48499 * 109.47082 * 209.99859 * 20 18 16 23 23 H 1.48504 * 109.47077 * 329.99802 * 20 18 16 24 24 H 1.08993 * 109.46721 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46994 * 300.00076 * 1 2 3 26 26 H 1.08999 * 109.46566 * 59.99946 * 1 2 3 27 27 H 0.96699 * 114.00096 * 294.50733 * 4 2 1 28 28 H 1.09000 * 109.46990 * 54.87057 * 5 2 1 29 29 H 1.08996 * 109.47063 * 294.87013 * 5 2 1 30 30 H 1.09004 * 110.72062 * 100.02909 * 8 6 5 31 31 H 1.09004 * 110.87561 * 336.82472 * 8 6 5 32 32 H 1.09005 * 111.00515 * 153.57462 * 9 8 6 33 33 H 1.08996 * 111.00872 * 277.43285 * 9 8 6 34 34 H 1.08992 * 110.36950 * 81.83008 * 10 9 8 35 35 H 1.09005 * 110.36011 * 204.15424 * 10 9 8 36 36 H 1.09007 * 109.47175 * 297.17547 * 15 12 11 37 37 H 1.08998 * 109.47224 * 57.17262 * 15 12 11 38 38 H 0.96993 * 120.00033 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7213 -1.2492 6 6 3.5646 -0.6105 -1.3154 7 1 4.0052 -1.0114 -0.4026 8 6 3.9763 0.8663 -1.4922 9 6 5.1775 0.7775 -2.4702 10 6 4.7484 -0.3977 -3.3838 11 7 4.0693 -1.3471 -2.4834 12 16 3.9028 -2.9740 -2.7441 13 8 5.0632 -3.3311 -3.4823 14 8 3.6620 -3.5132 -1.4516 15 6 2.4204 -3.1171 -3.7798 16 6 2.2011 -4.5623 -4.1461 17 1 2.8848 -5.3191 -3.7911 18 6 1.1269 -4.9185 -4.9337 19 7 0.9352 -6.1798 -5.2530 20 14 -0.0562 -3.6096 -5.5473 21 1 0.4146 -3.0915 -6.8570 22 1 -1.4092 -4.2006 -5.7062 23 1 -0.1144 -2.4961 -4.5665 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 1.7920 -0.2240 1.9956 28 1 1.6037 -0.2633 -2.1368 29 1 1.7537 -1.7720 -1.2044 30 1 4.2855 1.2971 -0.5399 31 1 3.1640 1.4461 -1.9306 32 1 5.2840 1.6988 -3.0430 33 1 6.0987 0.5419 -1.9374 34 1 4.0615 -0.0480 -4.1544 35 1 5.6229 -0.8644 -3.8374 36 1 1.5555 -2.7464 -3.2295 37 1 2.5531 -2.5283 -4.6875 38 1 0.1798 -6.4304 -5.8073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565239029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:21 Heat of formation + Delta-G solvation = -134.059930 kcal Electronic energy + Delta-G solvation = -21062.314834 eV Core-core repulsion = 17838.494075 eV Total energy + Delta-G solvation = -3223.820760 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.04019 -37.09830 -36.20304 -35.02633 -33.23986 -32.40278 -30.76332 -29.74952 -29.56309 -25.60359 -23.11194 -22.02235 -21.67104 -20.34109 -18.19598 -17.57074 -17.38314 -16.57855 -16.13943 -15.43138 -15.00398 -14.54582 -14.29209 -14.16808 -13.63669 -13.25263 -13.10115 -12.87617 -12.70295 -12.55308 -12.43303 -11.96396 -11.78302 -11.61244 -11.28668 -11.20987 -11.15258 -11.04347 -10.86704 -10.73063 -10.68285 -10.58914 -10.29146 -9.99040 -9.89475 -9.48078 -8.82935 -8.52409 -6.30700 -4.39164 1.16165 3.13640 3.20615 3.22441 3.44513 4.21865 4.23745 4.53360 4.59683 4.66671 4.80325 4.93588 4.94123 5.04004 5.10634 5.23974 5.39068 5.49899 5.51053 5.64987 5.67048 5.74320 5.80390 5.88769 5.92446 6.07328 6.15423 6.15916 6.22430 6.33768 6.38589 6.55271 6.85737 7.21996 7.66785 8.01754 8.61445 9.24625 10.80545 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.007474 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.707197 B = 3745.502166 C = 4496.560764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.108 3.892 3 H 0.056 0.944 4 O -0.558 6.558 5 C -0.144 4.144 6 C 0.158 3.842 7 H 0.086 0.914 8 C -0.125 4.125 9 C -0.128 4.128 10 C 0.114 3.886 11 N -1.019 6.019 12 S 2.616 3.384 13 O -0.970 6.970 14 O -0.962 6.962 15 C -0.473 4.473 16 C -0.532 4.532 17 H 0.085 0.915 18 C 0.088 3.912 19 N -0.880 5.880 20 Si 0.883 3.117 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.263 1.263 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.372 0.628 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.248 19.033 7.753 20.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.049 3.951 3 H 0.074 0.926 4 O -0.363 6.363 5 C -0.183 4.183 6 C 0.052 3.948 7 H 0.104 0.896 8 C -0.164 4.164 9 C -0.167 4.167 10 C -0.012 4.012 11 N -0.855 5.855 12 S 2.716 3.284 13 O -0.961 6.961 14 O -0.953 6.953 15 C -0.608 4.608 16 C -0.571 4.571 17 H 0.103 0.897 18 C -0.118 4.118 19 N -0.516 5.516 20 Si 0.709 3.291 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.188 1.188 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.218 0.782 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.964 17.709 7.532 19.344 hybrid contribution -1.592 1.218 -0.416 2.047 sum 0.372 18.928 7.116 20.224 Atomic orbital electron populations 1.22524 0.96605 1.03340 1.02066 1.21682 0.92605 0.94901 0.85955 0.92578 1.86673 1.80703 1.53156 1.15789 1.22287 0.96231 1.03230 0.96536 1.21165 0.92777 0.91673 0.89181 0.89569 1.22724 0.98241 0.95480 0.99927 1.22745 0.98367 0.98029 0.97580 1.21966 0.96891 0.89827 0.92483 1.59114 1.70441 1.25928 1.29987 1.04955 0.77511 0.70514 0.75470 1.93478 1.47215 1.80628 1.74743 1.93511 1.87307 1.75841 1.38656 1.28329 1.15482 1.06669 1.10297 1.20093 1.14314 0.87546 1.35146 0.89701 1.24894 0.96859 0.95537 0.94520 1.69868 1.29754 1.16246 1.35753 0.86711 0.80488 0.82081 0.79790 1.19656 1.20650 1.18755 0.91362 0.92503 0.91665 0.78202 0.89888 0.89856 0.90612 0.90811 0.90390 0.90747 0.91945 0.89976 0.89840 0.90401 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.90 9.56 37.16 0.36 -1.55 16 2 C 0.11 1.21 3.47 -26.73 -0.09 1.12 16 3 H 0.06 0.49 7.20 -51.93 -0.37 0.12 16 4 O -0.56 -6.90 12.80 -35.23 -0.45 -7.35 16 5 C -0.14 -2.05 4.34 -26.73 -0.12 -2.17 16 6 C 0.16 2.29 2.69 -66.96 -0.18 2.11 16 7 H 0.09 1.39 7.76 -51.93 -0.40 0.99 16 8 C -0.12 -1.28 5.40 -24.90 -0.13 -1.41 16 9 C -0.13 -1.31 7.09 -24.58 -0.17 -1.48 16 10 C 0.11 1.53 7.11 -2.53 -0.02 1.52 16 11 N -1.02 -17.18 3.32 -104.42 -0.35 -17.53 16 12 S 2.62 57.86 5.11 -107.50 -0.55 57.31 16 13 O -0.97 -23.81 17.37 -57.54 -1.00 -24.81 16 14 O -0.96 -23.73 17.04 -57.54 -0.98 -24.71 16 15 C -0.47 -11.03 5.00 36.00 0.18 -10.85 16 16 C -0.53 -15.27 9.68 -34.44 -0.33 -15.61 16 17 H 0.09 2.64 7.96 -52.49 -0.42 2.22 16 18 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 19 N -0.88 -26.54 13.96 55.43 0.77 -25.76 16 20 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.26 -5.72 6.54 56.52 0.37 -5.36 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.37 2.72 9.12 45.56 0.42 3.14 16 28 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 29 H 0.08 1.45 6.85 -51.93 -0.36 1.09 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.65 7.79 -51.93 -0.40 0.24 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.15 7.70 -51.93 -0.40 0.75 16 36 H 0.08 1.82 6.59 -51.92 -0.34 1.48 16 37 H 0.08 1.65 7.57 -51.92 -0.39 1.26 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -36.09 319.56 -8.24 -44.33 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.22 Total: 3.56 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: -0.61 Total: -25.89 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.43 Total: -43.29 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -2.43 Total: -56.88 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Atomic # 16 Polarization: 57.86 SS G_CDS: -0.55 Total: 57.31 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.09 -8.24 -44.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565239029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.729 kcal (2) G-P(sol) polarization free energy of solvation -36.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds