Wall clock time and date at job start Mon Mar 30 2020 01:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47276 * 2 1 4 4 O 1.42898 * 109.47054 * 119.99960 * 2 1 3 5 5 C 1.52998 * 109.47205 * 239.99732 * 2 1 3 6 6 C 1.53002 * 109.47175 * 174.86635 * 5 2 1 7 7 H 1.08993 * 109.87219 * 56.53799 * 6 5 2 8 8 C 1.54321 * 109.88131 * 295.52394 * 6 5 2 9 9 C 1.55158 * 102.94337 * 218.38654 * 8 6 5 10 10 C 1.54916 * 101.57731 * 35.50680 * 9 8 6 11 11 N 1.47019 * 109.88313 * 177.71651 * 6 5 2 12 12 S 1.65606 * 125.64879 * 298.33889 * 11 6 5 13 13 O 1.42092 * 104.27520 * 210.96968 * 12 11 6 14 14 O 1.42101 * 104.27467 * 338.82625 * 12 11 6 15 15 C 1.81397 * 104.45036 * 94.89563 * 12 11 6 16 16 C 1.50693 * 109.47217 * 177.17265 * 15 12 11 17 17 H 1.07996 * 120.00303 * 0.02562 * 16 15 12 18 18 C 1.37883 * 120.00312 * 179.97438 * 16 15 12 19 19 N 1.31511 * 120.00208 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99752 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47434 * 89.99917 * 20 18 16 22 22 H 1.48499 * 109.47082 * 209.99859 * 20 18 16 23 23 H 1.48504 * 109.47077 * 329.99802 * 20 18 16 24 24 H 1.08993 * 109.46721 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46994 * 300.00076 * 1 2 3 26 26 H 1.08999 * 109.46566 * 59.99946 * 1 2 3 27 27 H 0.96699 * 114.00096 * 294.50733 * 4 2 1 28 28 H 1.09000 * 109.46990 * 54.87057 * 5 2 1 29 29 H 1.08996 * 109.47063 * 294.87013 * 5 2 1 30 30 H 1.09004 * 110.72062 * 100.02909 * 8 6 5 31 31 H 1.09004 * 110.87561 * 336.82472 * 8 6 5 32 32 H 1.09005 * 111.00515 * 153.57462 * 9 8 6 33 33 H 1.08996 * 111.00872 * 277.43285 * 9 8 6 34 34 H 1.08992 * 110.36950 * 81.83008 * 10 9 8 35 35 H 1.09005 * 110.36011 * 204.15424 * 10 9 8 36 36 H 1.09007 * 109.47175 * 297.17547 * 15 12 11 37 37 H 1.08998 * 109.47224 * 57.17262 * 15 12 11 38 38 H 0.96993 * 120.00033 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7213 -1.2492 6 6 3.5646 -0.6105 -1.3154 7 1 4.0052 -1.0114 -0.4026 8 6 3.9763 0.8663 -1.4922 9 6 5.1775 0.7775 -2.4702 10 6 4.7484 -0.3977 -3.3838 11 7 4.0693 -1.3471 -2.4834 12 16 3.9028 -2.9740 -2.7441 13 8 5.0632 -3.3311 -3.4823 14 8 3.6620 -3.5132 -1.4516 15 6 2.4204 -3.1171 -3.7798 16 6 2.2011 -4.5623 -4.1461 17 1 2.8848 -5.3191 -3.7911 18 6 1.1269 -4.9185 -4.9337 19 7 0.9352 -6.1798 -5.2530 20 14 -0.0562 -3.6096 -5.5473 21 1 0.4146 -3.0915 -6.8570 22 1 -1.4092 -4.2006 -5.7062 23 1 -0.1144 -2.4961 -4.5665 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 1.7920 -0.2240 1.9956 28 1 1.6037 -0.2633 -2.1368 29 1 1.7537 -1.7720 -1.2044 30 1 4.2855 1.2971 -0.5399 31 1 3.1640 1.4461 -1.9306 32 1 5.2840 1.6988 -3.0430 33 1 6.0987 0.5419 -1.9374 34 1 4.0615 -0.0480 -4.1544 35 1 5.6229 -0.8644 -3.8374 36 1 1.5555 -2.7464 -3.2295 37 1 2.5531 -2.5283 -4.6875 38 1 0.1798 -6.4304 -5.8073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565239029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:20 Heat of formation + Delta-G solvation = -164.672667 kcal Electronic energy + Delta-G solvation = -21063.642302 eV Core-core repulsion = 17838.494075 eV Total energy + Delta-G solvation = -3225.148228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.05887 -38.15482 -37.93797 -36.91595 -35.37435 -33.36814 -31.93320 -31.71019 -30.46261 -26.54864 -25.17122 -23.09036 -22.62211 -21.35961 -19.73914 -19.46421 -18.41035 -18.17956 -17.55709 -17.13766 -16.46542 -16.10877 -15.53334 -15.17003 -14.83262 -14.75574 -14.39066 -14.31829 -14.09309 -13.80822 -13.56495 -13.35853 -13.14889 -13.05619 -12.80183 -12.72238 -12.65441 -12.57457 -12.24853 -11.98700 -11.89420 -11.68996 -11.60886 -11.45558 -11.36223 -10.96753 -10.81213 -9.83064 -8.48234 -6.65791 -0.59104 1.29507 1.33740 1.45240 1.91987 2.25032 2.82332 2.95989 3.23128 3.43097 3.63132 3.80841 3.91825 4.10912 4.22328 4.27087 4.36802 4.48160 4.49042 4.53428 4.61586 4.72231 4.89177 4.96630 5.01229 5.03882 5.08320 5.14297 5.22505 5.23601 5.30179 5.36795 5.49625 5.65456 5.77468 6.37997 7.02769 7.05603 8.67424 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.007474 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.707197 B = 3745.502166 C = 4496.560764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.109 3.891 3 H 0.094 0.906 4 O -0.589 6.589 5 C -0.153 4.153 6 C 0.149 3.851 7 H 0.059 0.941 8 C -0.112 4.112 9 C -0.119 4.119 10 C 0.097 3.903 11 N -1.015 6.015 12 S 2.631 3.369 13 O -1.004 7.004 14 O -1.000 7.000 15 C -0.476 4.476 16 C -0.560 4.560 17 H 0.034 0.966 18 C 0.024 3.976 19 N -0.933 5.933 20 Si 0.955 3.045 21 H -0.253 1.253 22 H -0.275 1.275 23 H -0.231 1.231 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.392 0.608 28 H 0.103 0.897 29 H 0.039 0.961 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.112 24.014 7.515 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.050 3.950 3 H 0.111 0.889 4 O -0.397 6.397 5 C -0.191 4.191 6 C 0.044 3.956 7 H 0.078 0.922 8 C -0.151 4.151 9 C -0.158 4.158 10 C -0.027 4.027 11 N -0.854 5.854 12 S 2.731 3.269 13 O -0.994 6.994 14 O -0.990 6.990 15 C -0.609 4.609 16 C -0.598 4.598 17 H 0.052 0.948 18 C -0.178 4.178 19 N -0.570 5.570 20 Si 0.774 3.226 21 H -0.177 1.177 22 H -0.200 1.200 23 H -0.154 1.154 24 H 0.058 0.942 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.241 0.759 28 H 0.122 0.878 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.845 22.687 7.317 23.853 hybrid contribution -1.151 -0.383 -0.274 1.243 sum -0.306 22.305 7.042 23.392 Atomic orbital electron populations 1.22520 0.95916 1.02049 1.03910 1.21764 0.93093 0.95858 0.84258 0.88857 1.86631 1.81144 1.54630 1.17318 1.22401 0.96139 1.01254 0.99350 1.21436 0.92983 0.94239 0.86984 0.92245 1.22755 0.98978 0.92031 1.01348 1.22773 0.98079 0.97811 0.97107 1.22408 0.96869 0.90140 0.93329 1.58657 1.70691 1.24467 1.31627 1.04023 0.76629 0.71946 0.74282 1.93423 1.48353 1.82351 1.75310 1.93451 1.87534 1.77931 1.40121 1.28300 1.17078 1.03532 1.12024 1.20345 1.14063 0.89633 1.35796 0.94788 1.26093 0.98934 0.98452 0.94315 1.70023 1.30983 1.19100 1.36851 0.85599 0.77277 0.79315 0.80393 1.17715 1.20042 1.15374 0.94197 0.90173 0.90339 0.75854 0.87824 0.94231 0.88436 0.88031 0.86683 0.91172 0.89438 0.91367 0.87916 0.87566 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.25 9.56 71.98 0.69 -2.57 16 2 C 0.11 2.13 3.47 30.60 0.11 2.23 16 3 H 0.09 1.14 7.20 -2.39 -0.02 1.13 16 4 O -0.59 -13.76 12.80 -148.98 -1.91 -15.66 16 5 C -0.15 -4.04 4.34 30.59 0.13 -3.91 16 6 C 0.15 4.03 2.69 45.34 0.12 4.15 16 7 H 0.06 1.91 7.76 -2.39 -0.02 1.89 16 8 C -0.11 -1.75 5.40 31.78 0.17 -1.58 16 9 C -0.12 -1.91 7.09 31.99 0.23 -1.68 16 10 C 0.10 2.34 7.11 86.86 0.62 2.96 16 11 N -1.02 -33.19 3.32 -484.29 -1.61 -34.80 16 12 S 2.63 120.14 5.11 -56.49 -0.29 119.85 16 13 O -1.00 -51.35 17.37 -127.65 -2.22 -53.57 16 14 O -1.00 -52.12 17.04 -127.65 -2.18 -54.29 16 15 C -0.48 -22.19 5.00 71.23 0.36 -21.83 16 16 C -0.56 -33.48 9.68 25.60 0.25 -33.23 16 17 H 0.03 2.29 7.96 -2.91 -0.02 2.27 16 18 C 0.02 1.37 5.47 84.66 0.46 1.83 16 19 N -0.93 -58.34 13.96 21.45 0.30 -58.04 16 20 Si 0.95 41.58 27.47 68.60 1.88 43.46 16 21 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.23 -8.80 6.54 99.48 0.65 -8.15 16 24 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.39 4.96 9.12 -74.06 -0.68 4.28 16 28 H 0.10 2.23 8.09 -2.39 -0.02 2.21 16 29 H 0.04 1.38 6.85 -2.39 -0.02 1.36 16 30 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.10 1.09 7.79 -2.38 -0.02 1.08 16 32 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.83 7.70 -2.38 -0.02 1.81 16 36 H 0.10 4.38 6.59 -2.39 -0.02 4.37 16 37 H 0.11 4.32 7.57 -2.39 -0.02 4.30 16 38 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -84.98 319.56 -2.56 -87.54 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.32 Total: 19.12 kcal Atomic # 6 Polarization: -56.75 SS G_CDS: 3.13 Total: -53.62 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -1.31 Total: -92.84 kcal Atomic # 8 Polarization: -117.22 SS G_CDS: -6.30 Total: -123.52 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.88 Total: 43.46 kcal Atomic # 16 Polarization: 120.14 SS G_CDS: -0.29 Total: 119.85 kcal Total: -84.98 -2.56 -87.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565239029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.134 kcal (2) G-P(sol) polarization free energy of solvation -84.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds