Wall clock time and date at job start Mon Mar 30 2020 01:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21301 * 120.00272 * 2 1 4 4 C 1.46796 * 120.00032 * 179.97438 * 2 1 3 5 5 C 1.40114 * 120.18793 * 0.02562 * 4 2 1 6 6 C 1.37661 * 120.00475 * 179.97438 * 5 4 2 7 7 C 1.38572 * 120.40330 * 359.97438 * 6 5 4 8 8 C 1.38582 * 120.38761 * 359.74338 * 7 6 5 9 9 N 1.40144 * 120.01083 * 180.25567 * 8 7 6 10 10 C 1.34770 * 119.99933 * 325.29776 * 9 8 7 11 11 O 1.21291 * 119.99962 * 4.47936 * 10 9 8 12 12 C 1.50700 * 119.99932 * 184.48622 * 10 9 8 13 13 C 1.53005 * 109.47252 * 179.97438 * 12 10 9 14 14 C 1.50692 * 109.47065 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00309 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99859 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00266 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 120.00023 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47370 * 89.99687 * 18 16 14 20 20 H 1.48502 * 109.46914 * 209.99594 * 18 16 14 21 21 H 1.48496 * 109.46782 * 329.99430 * 18 16 14 22 22 C 1.39309 * 119.97855 * 0.52892 * 8 7 6 23 23 O 1.35669 * 120.19799 * 179.74886 * 22 8 7 24 24 H 1.08995 * 109.47386 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46887 * 300.00269 * 1 2 3 26 26 H 1.09002 * 109.47031 * 60.00052 * 1 2 3 27 27 H 1.08003 * 119.99891 * 359.97438 * 5 4 2 28 28 H 1.08003 * 119.79826 * 180.02562 * 6 5 4 29 29 H 1.08003 * 119.80748 * 180.02562 * 7 6 5 30 30 H 0.96999 * 119.99789 * 145.29252 * 9 8 7 31 31 H 1.09003 * 109.47146 * 299.99497 * 12 10 9 32 32 H 1.08998 * 109.47253 * 59.99888 * 12 10 9 33 33 H 1.09003 * 109.47012 * 300.00042 * 13 12 10 34 34 H 1.09000 * 109.47019 * 59.99580 * 13 12 10 35 35 H 0.96999 * 120.00804 * 179.97438 * 17 16 14 36 36 H 0.96700 * 113.99998 * 269.72824 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2410 -1.2713 0.0006 5 6 1.5444 -2.4870 0.0006 6 6 2.2365 -3.6770 0.0006 7 6 3.6222 -3.6823 0.0000 8 6 4.3278 -2.4896 -0.0059 9 7 5.7292 -2.5042 -0.0118 10 6 6.3958 -3.4691 0.6522 11 8 5.7849 -4.3704 1.1867 12 6 7.9002 -3.4281 0.7308 13 6 8.4018 -4.6291 1.5352 14 6 9.9061 -4.5877 1.6143 15 1 10.4500 -3.7849 1.1388 16 6 10.5881 -5.5747 2.2937 17 7 9.9259 -6.5521 2.8731 18 14 12.4529 -5.5231 2.3923 19 1 12.8639 -4.7564 3.5958 20 1 12.9823 -6.9076 2.4828 21 1 12.9947 -4.8644 1.1768 22 6 3.6437 -1.2760 -0.0002 23 8 4.3300 -0.1058 -0.0008 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.4644 -2.4905 0.0006 28 1 1.6962 -4.6121 0.0002 29 1 4.1555 -4.6215 -0.0004 30 1 6.2193 -1.8199 -0.4938 31 1 8.3177 -3.4643 -0.2754 32 1 8.2134 -2.5064 1.2212 33 1 7.9843 -4.5924 2.5414 34 1 8.0885 -5.5509 1.0452 35 1 10.4056 -7.2467 3.3508 36 1 4.5294 0.2337 0.8825 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568515468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:40 Heat of formation + Delta-G solvation = -95.429191 kcal Electronic energy + Delta-G solvation = -20512.412657 eV Core-core repulsion = 17154.823100 eV Total energy + Delta-G solvation = -3357.589556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.86351 -39.54505 -38.15992 -36.78065 -34.61344 -33.56892 -31.85118 -31.03957 -29.59741 -28.91203 -25.82511 -24.21877 -22.69231 -21.78294 -20.29719 -19.50135 -18.57345 -17.42465 -17.07734 -16.30128 -15.98186 -15.71826 -15.32902 -15.11355 -14.91636 -14.47046 -14.36961 -14.30596 -13.50257 -12.97065 -12.76915 -12.48237 -12.32962 -12.21035 -12.14832 -11.89842 -11.27140 -11.13577 -10.97874 -10.65035 -10.38791 -10.05881 -9.87599 -9.74065 -9.30217 -9.14194 -8.92043 -8.38560 -8.15471 -6.01939 -4.06724 0.45858 1.03979 2.24125 2.94329 3.17450 3.30288 3.36817 3.39388 3.51300 3.85773 4.03744 4.42953 4.62832 4.71619 4.87448 5.10468 5.11363 5.18945 5.31445 5.33393 5.45818 5.53379 5.76838 5.89417 6.03941 6.08681 6.15738 6.21737 6.39702 6.75605 6.76513 7.34705 7.48783 7.57198 7.67024 7.75678 7.98799 8.28998 8.48139 9.00998 9.57401 11.08951 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.040621 B = 0.003193 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.129824 B = 8767.837160 C = 9282.133607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.394 3.606 3 O -0.448 6.448 4 C -0.189 4.189 5 C -0.084 4.084 6 C -0.122 4.122 7 C -0.079 4.079 8 C 0.120 3.880 9 N -0.681 5.681 10 C 0.510 3.490 11 O -0.515 6.515 12 C -0.129 4.129 13 C 0.037 3.963 14 C -0.529 4.529 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.889 5.889 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.134 3.866 23 O -0.478 6.478 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.151 0.849 30 H 0.414 0.586 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.262 0.738 36 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.742 10.590 -6.834 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.272 3.728 3 O -0.323 6.323 4 C -0.191 4.191 5 C -0.103 4.103 6 C -0.141 4.141 7 C -0.099 4.099 8 C 0.024 3.976 9 N -0.327 5.327 10 C 0.300 3.700 11 O -0.389 6.389 12 C -0.168 4.168 13 C 0.000 4.000 14 C -0.567 4.567 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C 0.085 3.915 23 O -0.288 6.288 24 H 0.102 0.898 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.169 0.831 30 H 0.251 0.749 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -18.762 10.262 -6.910 22.473 hybrid contribution 1.270 0.253 0.390 1.352 sum -17.492 10.515 -6.520 21.425 Atomic orbital electron populations 1.22233 0.93920 1.04779 1.04804 1.22246 0.91445 0.87428 0.71663 1.90572 1.71910 1.34057 1.35771 1.20689 0.92926 0.95739 1.09736 1.21358 0.99995 0.90936 0.98017 1.21069 0.93707 0.98347 1.00946 1.21635 0.94188 0.98375 0.95747 1.18194 0.84424 0.92924 1.02016 1.43898 1.03533 1.32122 1.53185 1.21922 0.92025 0.80121 0.75900 1.90659 1.69857 1.33855 1.44490 1.21926 0.86818 1.04519 1.03573 1.18920 0.95180 0.90807 0.95132 1.21191 0.91630 1.09634 1.34279 0.92515 1.25020 0.98479 0.95405 0.95420 1.69985 1.35515 1.12569 1.34717 0.86574 0.85575 0.77281 0.78434 1.20632 1.21180 1.19847 1.18432 0.88804 0.84764 0.99471 1.84707 1.75031 1.35527 1.33543 0.89774 0.88893 0.88908 0.84599 0.84794 0.83095 0.74940 0.89689 0.89708 0.95740 0.95690 0.92875 0.74901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.25 10.19 36.00 0.37 -0.89 16 2 C 0.39 4.19 7.22 -30.85 -0.22 3.96 16 3 O -0.45 -6.22 15.90 -16.40 -0.26 -6.48 16 4 C -0.19 -2.13 5.88 -104.97 -0.62 -2.74 16 5 C -0.08 -0.77 9.44 -39.09 -0.37 -1.14 16 6 C -0.12 -1.28 10.01 -39.67 -0.40 -1.68 16 7 C -0.08 -1.09 8.69 -39.33 -0.34 -1.43 16 8 C 0.12 1.70 6.32 -83.53 -0.53 1.17 16 9 N -0.68 -9.76 5.19 -9.77 -0.05 -9.81 16 10 C 0.51 9.29 7.67 -10.99 -0.08 9.20 16 11 O -0.51 -11.15 13.40 5.55 0.07 -11.07 16 12 C -0.13 -2.48 5.64 -27.88 -0.16 -2.63 16 13 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 14 C -0.53 -14.67 9.11 -34.44 -0.31 -14.99 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 C 0.13 1.73 6.74 -38.42 -0.26 1.47 16 23 O -0.48 -5.94 11.13 -40.64 -0.45 -6.40 16 24 H 0.08 0.35 5.60 -51.93 -0.29 0.06 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.14 0.76 5.92 -52.48 -0.31 0.45 16 28 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.15 2.37 6.18 -52.48 -0.32 2.05 16 30 H 0.41 4.93 8.57 -40.82 -0.35 4.58 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 36 H 0.39 3.72 9.06 45.56 0.41 4.13 16 LS Contribution 314.60 15.07 4.74 4.74 Total: -1.00 -35.01 314.60 -6.73 -41.74 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.36 Total: 4.40 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -3.14 Total: -7.28 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.69 Total: -36.01 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.64 Total: -23.95 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.01 -6.73 -41.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568515468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.690 kcal (2) G-P(sol) polarization free energy of solvation -35.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds