Wall clock time and date at job start Mon Mar 30 2020 01:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21301 * 120.00272 * 2 1 4 4 C 1.46796 * 120.00032 * 179.97438 * 2 1 3 5 5 C 1.40114 * 120.18793 * 0.02562 * 4 2 1 6 6 C 1.37661 * 120.00475 * 179.97438 * 5 4 2 7 7 C 1.38572 * 120.40330 * 359.97438 * 6 5 4 8 8 C 1.38582 * 120.38761 * 359.74338 * 7 6 5 9 9 N 1.40144 * 120.01083 * 180.25567 * 8 7 6 10 10 C 1.34770 * 119.99933 * 325.29776 * 9 8 7 11 11 O 1.21291 * 119.99962 * 4.47936 * 10 9 8 12 12 C 1.50700 * 119.99932 * 184.48622 * 10 9 8 13 13 C 1.53005 * 109.47252 * 179.97438 * 12 10 9 14 14 C 1.50692 * 109.47065 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00309 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99859 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00266 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 120.00023 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47370 * 89.99687 * 18 16 14 20 20 H 1.48502 * 109.46914 * 209.99594 * 18 16 14 21 21 H 1.48496 * 109.46782 * 329.99430 * 18 16 14 22 22 C 1.39309 * 119.97855 * 0.52892 * 8 7 6 23 23 O 1.35669 * 120.19799 * 179.74886 * 22 8 7 24 24 H 1.08995 * 109.47386 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46887 * 300.00269 * 1 2 3 26 26 H 1.09002 * 109.47031 * 60.00052 * 1 2 3 27 27 H 1.08003 * 119.99891 * 359.97438 * 5 4 2 28 28 H 1.08003 * 119.79826 * 180.02562 * 6 5 4 29 29 H 1.08003 * 119.80748 * 180.02562 * 7 6 5 30 30 H 0.96999 * 119.99789 * 145.29252 * 9 8 7 31 31 H 1.09003 * 109.47146 * 299.99497 * 12 10 9 32 32 H 1.08998 * 109.47253 * 59.99888 * 12 10 9 33 33 H 1.09003 * 109.47012 * 300.00042 * 13 12 10 34 34 H 1.09000 * 109.47019 * 59.99580 * 13 12 10 35 35 H 0.96999 * 120.00804 * 179.97438 * 17 16 14 36 36 H 0.96700 * 113.99998 * 269.72824 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2410 -1.2713 0.0006 5 6 1.5444 -2.4870 0.0006 6 6 2.2365 -3.6770 0.0006 7 6 3.6222 -3.6823 0.0000 8 6 4.3278 -2.4896 -0.0059 9 7 5.7292 -2.5042 -0.0118 10 6 6.3958 -3.4691 0.6522 11 8 5.7849 -4.3704 1.1867 12 6 7.9002 -3.4281 0.7308 13 6 8.4018 -4.6291 1.5352 14 6 9.9061 -4.5877 1.6143 15 1 10.4500 -3.7849 1.1388 16 6 10.5881 -5.5747 2.2937 17 7 9.9259 -6.5521 2.8731 18 14 12.4529 -5.5231 2.3923 19 1 12.8639 -4.7564 3.5958 20 1 12.9823 -6.9076 2.4828 21 1 12.9947 -4.8644 1.1768 22 6 3.6437 -1.2760 -0.0002 23 8 4.3300 -0.1058 -0.0008 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.4644 -2.4905 0.0006 28 1 1.6962 -4.6121 0.0002 29 1 4.1555 -4.6215 -0.0004 30 1 6.2193 -1.8199 -0.4938 31 1 8.3177 -3.4643 -0.2754 32 1 8.2134 -2.5064 1.2212 33 1 7.9843 -4.5924 2.5414 34 1 8.0885 -5.5509 1.0452 35 1 10.4056 -7.2467 3.3508 36 1 4.5294 0.2337 0.8825 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568515468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:39 Heat of formation + Delta-G solvation = -120.260375 kcal Electronic energy + Delta-G solvation = -20513.489418 eV Core-core repulsion = 17154.823100 eV Total energy + Delta-G solvation = -3358.666317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.92716 -40.70003 -39.20611 -37.71173 -35.89457 -35.56520 -33.24580 -32.41210 -30.49418 -29.84978 -27.68154 -25.24004 -24.10620 -23.02497 -21.68026 -20.60466 -19.56261 -18.86626 -18.34449 -17.72513 -17.17571 -16.79418 -16.52237 -16.43089 -16.22748 -15.82599 -15.31274 -15.24806 -15.02389 -14.37062 -14.24027 -13.64232 -13.41662 -13.29445 -13.10861 -12.94656 -12.83562 -12.62688 -12.50137 -12.08297 -11.96258 -11.67723 -11.51516 -11.32400 -10.94623 -10.57954 -10.51387 -9.88656 -9.21156 -8.19914 -6.33595 -0.44065 0.09719 1.34406 1.41735 1.43832 1.54754 1.60850 1.97121 2.42119 2.59873 3.04109 3.13511 3.17434 3.79729 3.89790 4.02778 4.13727 4.28150 4.41645 4.47889 4.48969 4.61137 4.69743 4.80153 4.99981 5.03792 5.09865 5.24218 5.33339 5.42964 5.48548 5.59781 5.76379 5.82925 6.15193 6.34638 6.56522 6.61932 6.84056 7.10601 7.36657 8.92576 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.040621 B = 0.003193 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.129824 B = 8767.837160 C = 9282.133607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.394 3.606 3 O -0.489 6.489 4 C -0.200 4.200 5 C -0.059 4.059 6 C -0.120 4.120 7 C -0.099 4.099 8 C 0.091 3.909 9 N -0.662 5.662 10 C 0.514 3.486 11 O -0.559 6.559 12 C -0.117 4.117 13 C 0.043 3.957 14 C -0.544 4.544 15 H 0.075 0.925 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.972 3.028 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.257 1.257 22 C 0.126 3.874 23 O -0.486 6.486 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.184 0.816 28 H 0.162 0.838 29 H 0.124 0.876 30 H 0.426 0.574 31 H 0.108 0.892 32 H 0.107 0.893 33 H -0.015 1.015 34 H -0.013 1.013 35 H 0.263 0.737 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.037 12.095 -7.731 24.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.275 3.725 3 O -0.367 6.367 4 C -0.202 4.202 5 C -0.077 4.077 6 C -0.139 4.139 7 C -0.120 4.120 8 C -0.004 4.004 9 N -0.308 5.308 10 C 0.305 3.695 11 O -0.436 6.436 12 C -0.157 4.157 13 C 0.006 3.994 14 C -0.582 4.582 15 H 0.093 0.907 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.796 3.204 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.180 1.180 22 C 0.078 3.922 23 O -0.299 6.299 24 H 0.129 0.871 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.201 0.799 28 H 0.180 0.820 29 H 0.142 0.858 30 H 0.265 0.735 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.003 0.997 34 H 0.005 0.995 35 H 0.072 0.928 36 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -20.079 11.816 -7.839 24.581 hybrid contribution 1.533 -0.197 0.650 1.677 sum -18.546 11.619 -7.189 23.035 Atomic orbital electron populations 1.22274 0.89936 1.06921 1.05864 1.22872 0.93448 0.86255 0.69960 1.90565 1.73130 1.35170 1.37806 1.21071 0.92359 0.97334 1.09412 1.21836 1.02115 0.89208 0.94555 1.21396 0.92294 1.00344 0.99833 1.21625 0.95941 0.97220 0.97203 1.18354 0.83834 0.93790 1.04446 1.43483 1.04159 1.31089 1.52107 1.21588 0.91620 0.80361 0.75960 1.90649 1.70463 1.35795 1.46711 1.21673 0.87894 1.02273 1.03861 1.18689 0.94900 0.92187 0.93663 1.21695 0.92559 1.09996 1.33970 0.90695 1.26096 1.04322 0.94915 0.94929 1.70156 1.37925 1.13622 1.35877 0.85348 0.78537 0.77366 0.79170 1.19772 1.21129 1.18038 1.18592 0.89765 0.84237 0.99620 1.84671 1.75215 1.35380 1.34586 0.87108 0.87693 0.87749 0.79896 0.82036 0.85829 0.73543 0.87359 0.87449 0.99658 0.99455 0.92807 0.73737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 10.19 71.24 0.73 -0.89 16 2 C 0.39 7.42 7.22 27.93 0.20 7.62 16 3 O -0.49 -13.03 15.90 17.88 0.28 -12.75 16 4 C -0.20 -4.06 5.88 -20.09 -0.12 -4.18 16 5 C -0.06 -0.87 9.44 22.59 0.21 -0.66 16 6 C -0.12 -2.29 10.01 22.21 0.22 -2.07 16 7 C -0.10 -2.79 8.69 22.43 0.19 -2.59 16 8 C 0.09 2.58 6.32 38.15 0.24 2.83 16 9 N -0.66 -19.30 5.19 -303.22 -1.57 -20.87 16 10 C 0.51 19.44 7.67 87.66 0.67 20.11 16 11 O -0.56 -25.76 13.40 -3.07 -0.04 -25.81 16 12 C -0.12 -4.58 5.64 29.85 0.17 -4.42 16 13 C 0.04 2.35 4.26 29.85 0.13 2.48 16 14 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 15 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 16 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 17 N -0.94 -58.63 13.29 21.45 0.28 -58.35 16 18 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 22 C 0.13 3.19 6.74 23.02 0.16 3.34 16 23 O -0.49 -11.97 11.13 -68.88 -0.77 -12.73 16 24 H 0.11 0.29 5.60 -2.39 -0.01 0.28 16 25 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.18 0.95 5.92 -2.91 -0.02 0.93 16 28 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 29 H 0.12 4.16 6.18 -2.91 -0.02 4.14 16 30 H 0.43 10.02 8.57 -92.71 -0.79 9.23 16 31 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 32 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 33 H -0.02 -0.92 8.10 -2.39 -0.02 -0.94 16 34 H -0.01 -0.79 8.10 -2.39 -0.02 -0.81 16 35 H 0.26 15.45 8.31 -92.71 -0.77 14.67 16 36 H 0.40 7.64 9.06 -74.06 -0.67 6.97 16 Total: -1.00 -80.73 314.60 3.39 -77.34 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -0.33 Total: 15.74 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 3.50 Total: -8.59 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -1.29 Total: -79.22 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -0.52 Total: -51.29 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -80.73 3.39 -77.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568515468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.922 kcal (2) G-P(sol) polarization free energy of solvation -80.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds