Wall clock time and date at job start Mon Mar 30 2020 01:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99850 * 2 1 4 4 C 1.52998 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47132 * 55.00059 * 4 3 2 6 6 C 1.52993 * 109.47400 * 295.00216 * 4 3 2 7 7 C 1.53004 * 109.47197 * 174.99942 * 4 3 2 8 8 S 1.81404 * 109.47052 * 185.00121 * 7 4 3 9 9 O 1.42091 * 110.53974 * 291.62403 * 8 7 4 10 10 O 1.42099 * 110.54142 * 68.37324 * 8 7 4 11 11 N 1.65597 * 104.44681 * 179.97438 * 8 7 4 12 12 C 1.36937 * 120.00583 * 269.99964 * 11 8 7 13 13 H 1.07998 * 119.99362 * 306.08770 * 12 11 8 14 14 C 1.38811 * 119.99918 * 126.08444 * 12 11 8 15 15 N 1.31623 * 119.99536 * 165.01422 * 14 12 11 16 16 Si 1.86790 * 120.00360 * 345.01207 * 14 12 11 17 17 H 1.48499 * 109.47255 * 93.04197 * 16 14 12 18 18 H 1.48504 * 109.47229 * 213.04265 * 16 14 12 19 19 H 1.48503 * 109.47319 * 333.03984 * 16 14 12 20 20 C 1.46503 * 119.99825 * 90.00013 * 11 8 7 21 21 C 1.52999 * 117.49967 * 182.68681 * 20 11 8 22 22 C 1.53002 * 117.49867 * 114.02544 * 20 11 8 23 23 H 1.09002 * 109.46609 * 299.99431 * 1 2 3 24 24 H 1.08998 * 109.47311 * 60.00080 * 1 2 3 25 25 H 1.09001 * 109.46479 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46984 * 60.00188 * 3 2 1 27 27 H 1.09007 * 109.46757 * 300.00274 * 3 2 1 28 28 H 1.09001 * 109.47206 * 59.99548 * 6 4 3 29 29 H 1.09000 * 109.47685 * 180.02562 * 6 4 3 30 30 H 1.09004 * 109.46850 * 300.00016 * 6 4 3 31 31 H 1.08996 * 109.47065 * 304.99859 * 7 4 3 32 32 H 1.08999 * 109.46955 * 64.99916 * 7 4 3 33 33 H 0.96998 * 120.00161 * 179.97438 * 15 14 12 34 34 H 1.09005 * 115.55293 * 328.36037 * 20 11 8 35 35 H 1.08996 * 117.49995 * 0.02562 * 21 20 11 36 36 H 1.09005 * 117.49311 * 145.02026 * 21 20 11 37 37 H 1.08999 * 117.50087 * 214.97438 * 22 20 11 38 38 H 1.09002 * 117.50018 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8508 0.5686 -0.8427 6 6 3.9963 0.5365 1.3063 7 6 4.1573 2.5771 -0.1264 8 16 5.9586 2.4236 -0.2759 9 8 6.5219 1.9566 0.9421 10 8 6.3070 1.8302 -1.5192 11 7 6.4970 3.9843 -0.4037 12 6 6.6166 4.5687 -1.6363 13 1 7.1964 4.0857 -2.4089 14 6 5.9925 5.7818 -1.8928 15 7 6.3344 6.4871 -2.9501 16 14 4.6675 6.4132 -0.7374 17 1 5.2817 7.3015 0.2818 18 1 3.6562 7.1752 -1.5133 19 1 4.0111 5.2649 -0.0623 20 6 6.8455 4.7400 0.8021 21 6 7.2765 6.1971 0.6227 22 6 8.3124 5.1319 0.9909 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.5533 -0.4554 1.3959 29 1 5.0830 0.4509 1.3061 30 1 3.6810 1.1527 2.1484 31 1 3.7603 3.0737 -1.0117 32 1 3.9149 3.1645 0.7592 33 1 5.8981 7.3347 -3.1296 34 1 6.2722 4.4910 1.6951 35 1 7.3003 6.5936 -0.3923 36 1 6.9869 6.9065 1.3979 37 1 8.7040 5.1412 2.0080 38 1 9.0183 4.8271 0.2182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572648190.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:15 Heat of formation + Delta-G solvation = -84.245511 kcal Electronic energy + Delta-G solvation = -21050.850404 eV Core-core repulsion = 17829.189760 eV Total energy + Delta-G solvation = -3221.660644 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.20330 -37.61600 -35.92654 -35.02813 -34.61272 -33.15119 -31.54132 -27.62393 -27.00765 -25.22167 -24.91322 -21.91754 -20.97831 -20.40160 -18.38382 -17.26501 -16.96282 -16.53855 -16.00025 -15.45240 -15.23033 -14.79018 -14.67270 -14.01633 -13.86429 -13.48670 -13.28359 -12.86233 -12.53080 -12.22168 -12.05125 -11.70983 -11.57441 -11.36504 -11.19492 -10.92247 -10.85588 -10.81500 -10.72163 -10.64267 -10.55637 -10.25085 -9.95498 -9.68236 -9.62070 -9.44463 -8.91829 -7.81498 -6.68342 -4.37593 1.35573 3.02671 3.12184 3.12982 3.67396 3.88880 3.99210 4.47533 4.67229 4.87020 4.94845 4.99230 5.15160 5.21059 5.28665 5.30220 5.51531 5.55365 5.57301 5.63166 5.73942 5.76383 5.80562 5.95619 6.02611 6.11264 6.26060 6.33489 6.40912 6.52378 6.69455 6.99336 7.12775 7.26356 7.37278 8.24949 8.83725 8.94837 10.35110 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.006899 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.535018 B = 4057.505233 C = 4607.124517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.072 3.928 4 C -0.073 4.073 5 H 0.086 0.914 6 C -0.170 4.170 7 C -0.652 4.652 8 S 2.518 3.482 9 O -0.991 6.991 10 O -0.964 6.964 11 N -0.815 5.815 12 C -0.270 4.270 13 H 0.112 0.888 14 C 0.073 3.927 15 N -0.834 5.834 16 Si 0.873 3.127 17 H -0.253 1.253 18 H -0.289 1.289 19 H -0.256 1.256 20 C 0.082 3.918 21 C -0.194 4.194 22 C -0.180 4.180 23 H 0.038 0.962 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.281 0.719 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.048 -2.866 7.249 11.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.005 4.005 4 C -0.092 4.092 5 H 0.104 0.896 6 C -0.228 4.228 7 C -0.773 4.773 8 S 2.620 3.380 9 O -0.980 6.980 10 O -0.954 6.954 11 N -0.639 5.639 12 C -0.415 4.415 13 H 0.129 0.871 14 C -0.142 4.142 15 N -0.469 5.469 16 Si 0.698 3.302 17 H -0.178 1.178 18 H -0.216 1.216 19 H -0.180 1.180 20 C -0.026 4.026 21 C -0.232 4.232 22 C -0.220 4.220 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.542 -3.885 7.251 11.160 hybrid contribution -1.772 1.207 0.409 2.183 sum -9.315 -2.678 7.660 12.354 Atomic orbital electron populations 1.22716 0.81469 1.02487 0.99854 1.87871 1.19304 1.28410 1.95405 1.22630 0.93422 0.84133 1.00299 1.20723 0.93938 0.94425 1.00160 0.89600 1.22184 1.03191 1.01259 0.96121 1.31130 1.33838 1.02517 1.09802 1.11018 0.76904 0.76530 0.73548 1.93374 1.75870 1.81132 1.47665 1.93433 1.81421 1.76441 1.44057 1.52907 1.69956 1.32203 1.08814 1.19094 1.29105 1.04307 0.88994 0.87072 1.26045 0.96104 0.96549 0.95457 1.69838 1.38565 1.12691 1.25814 0.87007 0.81316 0.80537 0.81351 1.17797 1.21566 1.18002 1.21381 0.97261 0.94889 0.89090 1.23654 1.03951 0.91420 1.04203 1.23217 0.93419 1.03825 1.01513 0.94294 0.94168 0.89778 0.93195 0.93034 0.91418 0.90455 0.92281 0.86003 0.86752 0.90900 0.87008 0.85998 0.89645 0.89539 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.67 10.24 -35.23 -0.36 -6.03 16 3 C 0.07 1.06 5.32 37.16 0.20 1.26 16 4 C -0.07 -1.23 2.62 -90.62 -0.24 -1.47 16 5 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 6 C -0.17 -2.75 8.78 37.15 0.33 -2.43 16 7 C -0.65 -11.98 4.84 37.16 0.18 -11.80 16 8 S 2.52 55.79 5.04 -107.50 -0.54 55.25 16 9 O -0.99 -22.54 14.99 -57.54 -0.86 -23.40 16 10 O -0.96 -24.64 17.13 -57.54 -0.99 -25.63 16 11 N -0.82 -18.53 2.41 -53.42 -0.13 -18.66 16 12 C -0.27 -6.82 8.62 -15.06 -0.13 -6.95 16 13 H 0.11 3.14 7.92 -52.49 -0.42 2.72 16 14 C 0.07 1.78 3.74 -17.43 -0.07 1.72 16 15 N -0.83 -21.38 13.97 55.49 0.78 -20.61 16 16 Si 0.87 18.21 24.66 -169.99 -4.19 14.01 16 17 H -0.25 -4.92 5.64 56.52 0.32 -4.60 16 18 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.26 -5.02 5.91 56.52 0.33 -4.69 16 20 C 0.08 1.64 4.46 -67.93 -0.30 1.34 16 21 C -0.19 -3.69 6.56 -26.69 -0.18 -3.87 16 22 C -0.18 -3.32 10.37 -26.69 -0.28 -3.60 16 23 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.07 1.00 7.82 -51.93 -0.41 0.59 16 29 H 0.08 1.37 5.61 -51.93 -0.29 1.08 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.12 2.22 8.14 -51.93 -0.42 1.79 16 32 H 0.11 1.91 7.78 -51.92 -0.40 1.51 16 33 H 0.28 6.63 8.31 -40.82 -0.34 6.30 16 34 H 0.11 1.99 8.11 -51.93 -0.42 1.56 16 35 H 0.12 2.63 4.97 -51.93 -0.26 2.37 16 36 H 0.09 1.42 7.74 -51.93 -0.40 1.02 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.10 1.94 8.14 -51.93 -0.42 1.51 16 LS Contribution 313.10 15.07 4.72 4.72 Total: -1.00 -29.01 313.10 -7.06 -36.07 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.11 Total: 8.64 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 0.63 Total: -24.37 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.65 Total: -39.26 kcal Atomic # 8 Polarization: -52.85 SS G_CDS: -2.21 Total: -55.06 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -4.19 Total: 14.01 kcal Atomic # 16 Polarization: 55.79 SS G_CDS: -0.54 Total: 55.25 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.01 -7.06 -36.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572648190.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.178 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds