Wall clock time and date at job start Mon Mar 30 2020 01:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99850 * 2 1 4 4 C 1.52998 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47132 * 55.00059 * 4 3 2 6 6 C 1.52993 * 109.47400 * 295.00216 * 4 3 2 7 7 C 1.53004 * 109.47197 * 174.99942 * 4 3 2 8 8 S 1.81404 * 109.47052 * 185.00121 * 7 4 3 9 9 O 1.42091 * 110.53974 * 291.62403 * 8 7 4 10 10 O 1.42099 * 110.54142 * 68.37324 * 8 7 4 11 11 N 1.65597 * 104.44681 * 179.97438 * 8 7 4 12 12 C 1.36937 * 120.00583 * 269.99964 * 11 8 7 13 13 H 1.07998 * 119.99362 * 306.08770 * 12 11 8 14 14 C 1.38811 * 119.99918 * 126.08444 * 12 11 8 15 15 N 1.31623 * 119.99536 * 165.01422 * 14 12 11 16 16 Si 1.86790 * 120.00360 * 345.01207 * 14 12 11 17 17 H 1.48499 * 109.47255 * 93.04197 * 16 14 12 18 18 H 1.48504 * 109.47229 * 213.04265 * 16 14 12 19 19 H 1.48503 * 109.47319 * 333.03984 * 16 14 12 20 20 C 1.46503 * 119.99825 * 90.00013 * 11 8 7 21 21 C 1.52999 * 117.49967 * 182.68681 * 20 11 8 22 22 C 1.53002 * 117.49867 * 114.02544 * 20 11 8 23 23 H 1.09002 * 109.46609 * 299.99431 * 1 2 3 24 24 H 1.08998 * 109.47311 * 60.00080 * 1 2 3 25 25 H 1.09001 * 109.46479 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46984 * 60.00188 * 3 2 1 27 27 H 1.09007 * 109.46757 * 300.00274 * 3 2 1 28 28 H 1.09001 * 109.47206 * 59.99548 * 6 4 3 29 29 H 1.09000 * 109.47685 * 180.02562 * 6 4 3 30 30 H 1.09004 * 109.46850 * 300.00016 * 6 4 3 31 31 H 1.08996 * 109.47065 * 304.99859 * 7 4 3 32 32 H 1.08999 * 109.46955 * 64.99916 * 7 4 3 33 33 H 0.96998 * 120.00161 * 179.97438 * 15 14 12 34 34 H 1.09005 * 115.55293 * 328.36037 * 20 11 8 35 35 H 1.08996 * 117.49995 * 0.02562 * 21 20 11 36 36 H 1.09005 * 117.49311 * 145.02026 * 21 20 11 37 37 H 1.08999 * 117.50087 * 214.97438 * 22 20 11 38 38 H 1.09002 * 117.50018 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8508 0.5686 -0.8427 6 6 3.9963 0.5365 1.3063 7 6 4.1573 2.5771 -0.1264 8 16 5.9586 2.4236 -0.2759 9 8 6.5219 1.9566 0.9421 10 8 6.3070 1.8302 -1.5192 11 7 6.4970 3.9843 -0.4037 12 6 6.6166 4.5687 -1.6363 13 1 7.1964 4.0857 -2.4089 14 6 5.9925 5.7818 -1.8928 15 7 6.3344 6.4871 -2.9501 16 14 4.6675 6.4132 -0.7374 17 1 5.2817 7.3015 0.2818 18 1 3.6562 7.1752 -1.5133 19 1 4.0111 5.2649 -0.0623 20 6 6.8455 4.7400 0.8021 21 6 7.2765 6.1971 0.6227 22 6 8.3124 5.1319 0.9909 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.5533 -0.4554 1.3959 29 1 5.0830 0.4509 1.3061 30 1 3.6810 1.1527 2.1484 31 1 3.7603 3.0737 -1.0117 32 1 3.9149 3.1645 0.7592 33 1 5.8981 7.3347 -3.1296 34 1 6.2722 4.4910 1.6951 35 1 7.3003 6.5936 -0.3923 36 1 6.9869 6.9065 1.3979 37 1 8.7040 5.1412 2.0080 38 1 9.0183 4.8271 0.2182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572648190.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:14 Heat of formation + Delta-G solvation = -105.602404 kcal Electronic energy + Delta-G solvation = -21051.776509 eV Core-core repulsion = 17829.189760 eV Total energy + Delta-G solvation = -3222.586749 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.28282 -39.19761 -37.83770 -36.72528 -36.12307 -34.86812 -33.29619 -28.77581 -28.25069 -26.73895 -26.25038 -23.42244 -22.58277 -21.73194 -20.16643 -19.02238 -18.62334 -17.89081 -17.11812 -16.92173 -16.75673 -16.38231 -15.94243 -15.46120 -15.41231 -15.10083 -14.90334 -14.24034 -13.85773 -13.69425 -13.36391 -13.16881 -13.05124 -12.90236 -12.79241 -12.56474 -12.49008 -12.34914 -12.15944 -12.09187 -11.96198 -11.81515 -11.63864 -11.19231 -11.03535 -10.65023 -10.60783 -9.53229 -8.48274 -6.30346 -0.40743 1.41764 1.43486 1.53813 2.05820 2.29928 2.71160 2.77977 3.05349 3.28334 3.44324 3.66637 3.75435 3.93558 4.10475 4.19444 4.28588 4.31867 4.36304 4.43776 4.52188 4.55665 4.59902 4.65736 4.77439 4.83541 4.89476 4.91426 5.07470 5.17704 5.27840 5.48157 5.60519 5.65830 6.18138 6.27845 6.98300 7.11505 8.60510 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.006899 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.535018 B = 4057.505233 C = 4607.124517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.075 3.925 4 C -0.081 4.081 5 H 0.072 0.928 6 C -0.172 4.172 7 C -0.630 4.630 8 S 2.547 3.453 9 O -0.993 6.993 10 O -1.008 7.008 11 N -0.831 5.831 12 C -0.302 4.302 13 H 0.052 0.948 14 C 0.041 3.959 15 N -0.891 5.891 16 Si 0.920 3.080 17 H -0.226 1.226 18 H -0.296 1.296 19 H -0.230 1.230 20 C 0.057 3.943 21 C -0.189 4.189 22 C -0.180 4.180 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.149 0.851 33 H 0.283 0.717 34 H 0.147 0.853 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.957 -3.026 10.707 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C -0.002 4.002 4 C -0.101 4.101 5 H 0.090 0.910 6 C -0.229 4.229 7 C -0.758 4.758 8 S 2.651 3.349 9 O -0.983 6.983 10 O -0.998 6.998 11 N -0.657 5.657 12 C -0.441 4.441 13 H 0.069 0.931 14 C -0.169 4.169 15 N -0.528 5.528 16 Si 0.740 3.260 17 H -0.149 1.149 18 H -0.224 1.224 19 H -0.152 1.152 20 C -0.050 4.050 21 C -0.227 4.227 22 C -0.219 4.219 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.118 0.882 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.093 0.907 34 H 0.164 0.836 35 H 0.109 0.891 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.350 -3.983 10.663 15.385 hybrid contribution -0.897 0.978 -0.574 1.446 sum -11.247 -3.004 10.089 15.405 Atomic orbital electron populations 1.22960 0.79326 1.03985 1.00946 1.87828 1.21602 1.28214 1.95627 1.22527 0.91287 0.84732 1.01661 1.20798 0.96222 0.92769 1.00310 0.90971 1.22204 1.01843 1.02537 0.96294 1.30808 1.28175 1.04780 1.12018 1.08594 0.78597 0.75164 0.72533 1.93396 1.77033 1.80798 1.47087 1.93410 1.83153 1.77191 1.46086 1.52665 1.72393 1.31750 1.08870 1.18414 1.31084 1.05714 0.88913 0.93071 1.26593 0.97542 0.95866 0.96859 1.69939 1.40538 1.13588 1.28711 0.86273 0.78391 0.81196 0.80096 1.14916 1.22358 1.15234 1.21913 0.98588 0.95401 0.89089 1.23605 1.04002 0.91539 1.03596 1.23281 0.92614 1.03376 1.02652 0.92773 0.93454 0.88240 0.91029 0.92500 0.90146 0.92540 0.90207 0.85198 0.83337 0.90715 0.83610 0.89073 0.86148 0.85876 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.65 16 2 O -0.41 -10.52 10.24 -148.98 -1.53 -12.04 16 3 C 0.08 1.90 5.32 71.98 0.38 2.28 16 4 C -0.08 -2.48 2.62 -10.80 -0.03 -2.51 16 5 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 6 C -0.17 -4.94 8.78 71.98 0.63 -4.31 16 7 C -0.63 -20.96 4.84 71.98 0.35 -20.61 16 8 S 2.55 110.77 5.04 -56.49 -0.28 110.49 16 9 O -0.99 -43.35 14.99 -127.65 -1.91 -45.27 16 10 O -1.01 -53.16 17.13 -127.65 -2.19 -55.35 16 11 N -0.83 -37.74 2.41 -322.93 -0.78 -38.52 16 12 C -0.30 -16.04 8.62 84.03 0.72 -15.32 16 13 H 0.05 3.22 7.92 -2.91 -0.02 3.20 16 14 C 0.04 2.04 3.74 84.86 0.32 2.36 16 15 N -0.89 -48.51 13.97 21.65 0.30 -48.20 16 16 Si 0.92 35.99 24.66 68.60 1.69 37.68 16 17 H -0.23 -7.79 5.64 99.48 0.56 -7.23 16 18 H -0.30 -11.88 7.11 99.48 0.71 -11.18 16 19 H -0.23 -7.82 5.91 99.48 0.59 -7.23 16 20 C 0.06 2.16 4.46 44.99 0.20 2.36 16 21 C -0.19 -6.84 6.56 30.62 0.20 -6.64 16 22 C -0.18 -6.41 10.37 30.62 0.32 -6.10 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.08 2.11 7.82 -2.39 -0.02 2.09 16 29 H 0.06 1.86 5.61 -2.39 -0.01 1.84 16 30 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.13 4.30 8.14 -2.39 -0.02 4.28 16 32 H 0.15 4.06 7.78 -2.39 -0.02 4.05 16 33 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 34 H 0.15 4.48 8.11 -2.38 -0.02 4.46 16 35 H 0.09 3.96 4.97 -2.39 -0.01 3.95 16 36 H 0.12 3.49 7.74 -2.38 -0.02 3.47 16 37 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -67.12 313.10 0.42 -66.70 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: 0.77 Total: 31.35 kcal Atomic # 6 Polarization: -51.18 SS G_CDS: 4.34 Total: -46.84 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -0.47 Total: -86.72 kcal Atomic # 8 Polarization: -107.04 SS G_CDS: -5.63 Total: -112.66 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 1.69 Total: 37.68 kcal Atomic # 16 Polarization: 110.77 SS G_CDS: -0.28 Total: 110.49 kcal Total: -67.12 0.42 -66.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572648190.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.900 kcal (2) G-P(sol) polarization free energy of solvation -67.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds