Wall clock time and date at job start Mon Mar 30 2020 01:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.69904 * 2 1 4 4 C 1.53619 * 109.66730 * 120.59990 * 2 1 3 5 5 H 1.09006 * 109.66107 * 54.53665 * 4 2 1 6 6 C 1.53004 * 109.43240 * 294.41744 * 4 2 1 7 7 O 1.42891 * 109.47445 * 175.28709 * 6 4 2 8 8 C 1.53039 * 109.24374 * 174.54577 * 4 2 1 9 9 C 1.53035 * 109.53947 * 298.51380 * 8 4 2 10 10 C 1.53188 * 109.31274 * 61.36288 * 9 8 4 11 11 N 1.46924 * 108.77829 * 305.36236 * 10 9 8 12 12 S 1.65599 * 120.63469 * 233.59031 * 11 10 9 13 13 O 1.42102 * 104.27639 * 141.65202 * 12 11 10 14 14 O 1.42102 * 104.27615 * 13.79594 * 12 11 10 15 15 C 1.81394 * 104.45022 * 257.72708 * 12 11 10 16 16 C 1.50693 * 109.47602 * 179.97438 * 15 12 11 17 17 H 1.08003 * 119.99564 * 359.97438 * 16 15 12 18 18 C 1.37872 * 120.00446 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00293 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00101 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46948 * 89.99390 * 20 18 16 22 22 H 1.48505 * 109.46883 * 330.00015 * 20 18 16 23 23 H 1.48500 * 109.47156 * 210.00022 * 20 18 16 24 24 H 1.09000 * 109.46444 * 189.36041 * 1 2 3 25 25 H 1.09002 * 109.46907 * 309.35700 * 1 2 3 26 26 H 1.08995 * 109.47056 * 69.36188 * 1 2 3 27 27 H 1.09000 * 109.46822 * 295.29420 * 6 4 2 28 28 H 1.08998 * 109.46931 * 55.28762 * 6 4 2 29 29 H 0.96703 * 114.00166 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46040 * 178.48748 * 8 4 2 31 31 H 1.09005 * 109.45569 * 58.53047 * 8 4 2 32 32 H 1.09007 * 109.49738 * 301.40747 * 9 8 4 33 33 H 1.09004 * 109.49607 * 181.31770 * 9 8 4 34 34 H 1.09003 * 109.58485 * 185.57922 * 10 9 8 35 35 H 1.08994 * 109.59173 * 65.15783 * 10 9 8 36 36 H 1.09000 * 109.47266 * 59.99520 * 15 12 11 37 37 H 1.09007 * 109.46831 * 300.00225 * 15 12 11 38 38 H 0.96997 * 120.00692 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0471 -0.7364 1.2451 5 1 1.6097 -1.7338 1.2893 6 6 1.6567 0.0483 2.4993 7 8 2.0403 -0.6894 3.6614 8 6 3.5713 -0.8499 1.1674 9 6 3.9615 -1.6627 -0.0692 10 6 3.4656 -0.9418 -1.3266 11 7 2.0225 -0.6994 -1.1946 12 16 0.9718 -1.1989 -2.3731 13 8 -0.1673 -1.6553 -1.6565 14 8 1.7391 -2.0884 -3.1726 15 6 0.5788 0.3108 -3.2987 16 6 -0.3811 -0.0184 -4.4127 17 1 -0.7205 -1.0344 -4.5504 18 6 -0.8261 0.9773 -5.2561 19 7 -1.6634 0.6899 -6.2287 20 14 -0.2385 2.7346 -5.0185 21 1 0.9962 2.9554 -5.8135 22 1 0.0499 2.9699 -3.5808 23 1 -1.2943 3.6752 -5.4720 24 1 -0.3632 -1.0140 0.1672 25 1 -0.3633 0.6517 0.7946 26 1 -0.3633 0.3622 -0.9617 27 1 2.1645 1.0128 2.4971 28 1 0.5782 0.2056 2.5084 29 1 1.8233 -0.2505 4.4953 30 1 3.9444 -1.3482 2.0621 31 1 4.0066 0.1471 1.0989 32 1 3.5062 -2.6515 -0.0132 33 1 5.0461 -1.7630 -0.1111 34 1 3.6532 -1.5634 -2.2021 35 1 3.9877 0.0091 -1.4325 36 1 1.4939 0.7276 -3.7194 37 1 0.1224 1.0393 -2.6286 38 1 -1.9768 1.3905 -6.8219 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577747196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:57 Heat of formation + Delta-G solvation = -124.340265 kcal Electronic energy + Delta-G solvation = -21219.988394 eV Core-core repulsion = 17996.589110 eV Total energy + Delta-G solvation = -3223.399283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.23109 -36.61446 -36.51281 -35.08566 -33.29834 -32.76592 -32.46044 -29.80924 -27.57264 -25.73800 -23.53985 -22.62982 -21.51911 -20.18681 -18.26121 -17.54632 -17.41804 -16.32918 -15.90248 -15.60970 -15.21836 -14.64648 -14.40674 -14.31434 -13.94854 -13.65992 -13.17473 -12.74256 -12.71288 -12.65274 -12.36493 -12.15846 -11.67710 -11.58092 -11.42898 -11.12608 -11.02715 -10.88347 -10.86950 -10.60396 -10.46875 -10.33729 -9.98098 -9.94379 -9.84240 -9.48994 -8.85224 -8.59687 -6.33274 -4.42140 1.12936 3.12424 3.19656 3.21064 3.33860 4.08501 4.19853 4.58179 4.64732 4.78631 4.85435 4.93119 5.06368 5.11553 5.17797 5.30482 5.37543 5.41565 5.42596 5.65872 5.72883 5.79370 5.85887 5.97072 5.98963 6.13137 6.21102 6.25411 6.30469 6.41641 6.46234 6.75465 6.96505 7.19583 7.46854 7.98875 8.58582 9.22083 10.77846 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025540 B = 0.005979 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.052757 B = 4681.550018 C = 4992.593318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.163 3.837 3 H 0.071 0.929 4 C -0.095 4.095 5 H 0.085 0.915 6 C 0.080 3.920 7 O -0.573 6.573 8 C -0.107 4.107 9 C -0.132 4.132 10 C 0.115 3.885 11 N -1.006 6.006 12 S 2.604 3.396 13 O -0.965 6.965 14 O -0.973 6.973 15 C -0.475 4.475 16 C -0.532 4.532 17 H 0.085 0.915 18 C 0.089 3.911 19 N -0.880 5.880 20 Si 0.883 3.117 21 H -0.271 1.271 22 H -0.263 1.263 23 H -0.281 1.281 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.376 0.624 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.617 2.609 16.594 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.056 3.944 3 H 0.089 0.911 4 C -0.115 4.115 5 H 0.104 0.896 6 C 0.001 3.999 7 O -0.377 6.377 8 C -0.145 4.145 9 C -0.171 4.171 10 C -0.010 4.010 11 N -0.842 5.842 12 S 2.704 3.296 13 O -0.956 6.956 14 O -0.964 6.964 15 C -0.609 4.609 16 C -0.571 4.571 17 H 0.103 0.897 18 C -0.118 4.118 19 N -0.516 5.516 20 Si 0.709 3.291 21 H -0.196 1.196 22 H -0.188 1.188 23 H -0.206 1.206 24 H 0.122 0.878 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.223 0.777 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.437 1.338 15.846 18.491 hybrid contribution 0.122 2.147 0.279 2.168 sum 9.559 3.484 16.125 19.066 Atomic orbital electron populations 1.22827 0.92874 1.05904 1.03214 1.20869 0.94515 0.94933 0.84074 0.91089 1.21606 0.96883 1.00787 0.92253 0.89631 1.22245 0.98589 0.93753 0.85269 1.86475 1.85310 1.49848 1.16113 1.21464 0.94703 1.00237 0.98052 1.21877 1.00645 0.99733 0.94809 1.21417 0.80062 1.00290 0.99280 1.58108 1.17865 1.74726 1.33530 1.05288 0.73079 0.77958 0.73264 1.93539 1.51209 1.80635 1.70198 1.93454 1.70486 1.62561 1.69891 1.28349 1.06566 1.16032 1.09947 1.20079 1.27021 0.98003 1.12022 0.89698 1.24892 0.93713 0.99225 0.93946 1.69867 1.30810 1.34164 1.16740 0.86720 0.79108 0.84003 0.79294 1.19631 1.18781 1.20626 0.87803 0.91681 0.91300 0.93683 0.92934 0.77732 0.91278 0.92224 0.91480 0.91039 0.88314 0.91916 0.90308 0.89792 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.85 7.13 37.16 0.27 -2.58 16 2 C 0.16 2.24 2.99 -67.37 -0.20 2.04 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.10 -1.18 2.05 -90.28 -0.19 -1.36 16 5 H 0.09 1.22 8.13 -51.93 -0.42 0.80 16 6 C 0.08 0.79 6.31 37.16 0.23 1.03 16 7 O -0.57 -5.71 13.17 -35.23 -0.46 -6.17 16 8 C -0.11 -1.20 5.08 -26.69 -0.14 -1.34 16 9 C -0.13 -1.56 6.08 -26.62 -0.16 -1.72 16 10 C 0.11 1.58 6.47 -3.71 -0.02 1.55 16 11 N -1.01 -16.16 3.20 -106.24 -0.34 -16.50 16 12 S 2.60 54.27 4.76 -107.50 -0.51 53.75 16 13 O -0.97 -21.62 13.62 -57.54 -0.78 -22.41 16 14 O -0.97 -22.74 16.31 -57.54 -0.94 -23.68 16 15 C -0.47 -10.69 4.72 36.00 0.17 -10.52 16 16 C -0.53 -14.88 9.68 -34.45 -0.33 -15.22 16 17 H 0.09 2.57 7.96 -52.48 -0.42 2.15 16 18 C 0.09 2.50 5.47 -17.82 -0.10 2.40 16 19 N -0.88 -26.13 13.96 55.43 0.77 -25.35 16 20 Si 0.88 20.41 27.47 -169.99 -4.67 15.74 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H 0.10 1.74 6.37 -51.93 -0.33 1.41 16 25 H 0.06 0.76 7.01 -51.93 -0.36 0.40 16 26 H 0.07 1.16 4.73 -51.93 -0.25 0.92 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.49 6.63 -51.93 -0.34 0.14 16 29 H 0.38 1.98 9.12 45.56 0.42 2.39 16 30 H 0.07 0.77 7.79 -51.93 -0.40 0.37 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 1.46 6.60 -51.93 -0.34 1.12 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.65 7.57 -51.92 -0.39 1.25 16 37 H 0.08 1.75 5.62 -51.92 -0.29 1.46 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 303.91 15.07 4.58 4.58 Total: -1.00 -34.02 303.91 -7.67 -41.69 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.84 Total: 4.09 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: -0.47 Total: -25.73 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.43 Total: -41.86 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -2.19 Total: -52.26 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Atomic # 16 Polarization: 54.27 SS G_CDS: -0.51 Total: 53.75 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.02 -7.67 -41.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577747196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.651 kcal (2) G-P(sol) polarization free energy of solvation -34.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds