Wall clock time and date at job start Mon Mar 30 2020 01:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.69904 * 2 1 4 4 C 1.53619 * 109.66730 * 120.59990 * 2 1 3 5 5 H 1.09006 * 109.66107 * 54.53665 * 4 2 1 6 6 C 1.53004 * 109.43240 * 294.41744 * 4 2 1 7 7 O 1.42891 * 109.47445 * 175.28709 * 6 4 2 8 8 C 1.53039 * 109.24374 * 174.54577 * 4 2 1 9 9 C 1.53035 * 109.53947 * 298.51380 * 8 4 2 10 10 C 1.53188 * 109.31274 * 61.36288 * 9 8 4 11 11 N 1.46924 * 108.77829 * 305.36236 * 10 9 8 12 12 S 1.65599 * 120.63469 * 233.59031 * 11 10 9 13 13 O 1.42102 * 104.27639 * 141.65202 * 12 11 10 14 14 O 1.42102 * 104.27615 * 13.79594 * 12 11 10 15 15 C 1.81394 * 104.45022 * 257.72708 * 12 11 10 16 16 C 1.50693 * 109.47602 * 179.97438 * 15 12 11 17 17 H 1.08003 * 119.99564 * 359.97438 * 16 15 12 18 18 C 1.37872 * 120.00446 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00293 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00101 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46948 * 89.99390 * 20 18 16 22 22 H 1.48505 * 109.46883 * 330.00015 * 20 18 16 23 23 H 1.48500 * 109.47156 * 210.00022 * 20 18 16 24 24 H 1.09000 * 109.46444 * 189.36041 * 1 2 3 25 25 H 1.09002 * 109.46907 * 309.35700 * 1 2 3 26 26 H 1.08995 * 109.47056 * 69.36188 * 1 2 3 27 27 H 1.09000 * 109.46822 * 295.29420 * 6 4 2 28 28 H 1.08998 * 109.46931 * 55.28762 * 6 4 2 29 29 H 0.96703 * 114.00166 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46040 * 178.48748 * 8 4 2 31 31 H 1.09005 * 109.45569 * 58.53047 * 8 4 2 32 32 H 1.09007 * 109.49738 * 301.40747 * 9 8 4 33 33 H 1.09004 * 109.49607 * 181.31770 * 9 8 4 34 34 H 1.09003 * 109.58485 * 185.57922 * 10 9 8 35 35 H 1.08994 * 109.59173 * 65.15783 * 10 9 8 36 36 H 1.09000 * 109.47266 * 59.99520 * 15 12 11 37 37 H 1.09007 * 109.46831 * 300.00225 * 15 12 11 38 38 H 0.96997 * 120.00692 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0471 -0.7364 1.2451 5 1 1.6097 -1.7338 1.2893 6 6 1.6567 0.0483 2.4993 7 8 2.0403 -0.6894 3.6614 8 6 3.5713 -0.8499 1.1674 9 6 3.9615 -1.6627 -0.0692 10 6 3.4656 -0.9418 -1.3266 11 7 2.0225 -0.6994 -1.1946 12 16 0.9718 -1.1989 -2.3731 13 8 -0.1673 -1.6553 -1.6565 14 8 1.7391 -2.0884 -3.1726 15 6 0.5788 0.3108 -3.2987 16 6 -0.3811 -0.0184 -4.4127 17 1 -0.7205 -1.0344 -4.5504 18 6 -0.8261 0.9773 -5.2561 19 7 -1.6634 0.6899 -6.2287 20 14 -0.2385 2.7346 -5.0185 21 1 0.9962 2.9554 -5.8135 22 1 0.0499 2.9699 -3.5808 23 1 -1.2943 3.6752 -5.4720 24 1 -0.3632 -1.0140 0.1672 25 1 -0.3633 0.6517 0.7946 26 1 -0.3633 0.3622 -0.9617 27 1 2.1645 1.0128 2.4971 28 1 0.5782 0.2056 2.5084 29 1 1.8233 -0.2505 4.4953 30 1 3.9444 -1.3482 2.0621 31 1 4.0066 0.1471 1.0989 32 1 3.5062 -2.6515 -0.0132 33 1 5.0461 -1.7630 -0.1111 34 1 3.6532 -1.5634 -2.2021 35 1 3.9877 0.0091 -1.4325 36 1 1.4939 0.7276 -3.7194 37 1 0.1224 1.0393 -2.6286 38 1 -1.9768 1.3905 -6.8219 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577747196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:57 Heat of formation + Delta-G solvation = -152.601193 kcal Electronic energy + Delta-G solvation = -21221.213879 eV Core-core repulsion = 17996.589110 eV Total energy + Delta-G solvation = -3224.624769 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.24091 -38.22395 -37.41217 -36.81935 -35.34975 -33.85835 -33.49976 -31.77310 -28.63529 -26.65704 -25.25526 -24.04451 -22.49728 -21.19212 -19.75323 -19.39326 -18.34931 -17.85585 -17.42714 -17.19888 -16.17936 -16.11055 -15.79680 -15.30634 -15.15897 -14.86196 -14.68341 -14.31673 -14.13544 -13.87171 -13.55850 -13.38178 -13.29676 -13.11671 -12.85308 -12.63757 -12.47223 -12.24225 -12.22408 -11.87282 -11.82602 -11.65983 -11.33392 -11.26927 -11.12303 -10.93737 -10.69881 -9.82291 -8.45212 -6.62125 -0.52124 1.32930 1.35978 1.47533 1.91871 2.27406 2.86120 3.01088 3.27837 3.51309 3.55341 3.81508 4.00050 4.12389 4.23386 4.33634 4.37723 4.43487 4.50143 4.56163 4.60000 4.73281 4.79488 4.85030 4.90142 5.01747 5.03836 5.17529 5.21264 5.32342 5.35657 5.49811 5.57836 5.79615 5.80935 6.42210 7.00488 7.06518 8.70274 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025540 B = 0.005979 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.052757 B = 4681.550018 C = 4992.593318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.158 3.842 3 H 0.108 0.892 4 C -0.097 4.097 5 H 0.054 0.946 6 C 0.083 3.917 7 O -0.592 6.592 8 C -0.101 4.101 9 C -0.130 4.130 10 C 0.105 3.895 11 N -0.999 5.999 12 S 2.618 3.382 13 O -0.991 6.991 14 O -1.007 7.007 15 C -0.482 4.482 16 C -0.555 4.555 17 H 0.035 0.965 18 C 0.024 3.976 19 N -0.934 5.934 20 Si 0.953 3.047 21 H -0.258 1.258 22 H -0.228 1.228 23 H -0.277 1.277 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.397 0.603 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.929 5.748 19.098 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.053 3.947 3 H 0.126 0.874 4 C -0.117 4.117 5 H 0.073 0.927 6 C 0.005 3.995 7 O -0.400 6.400 8 C -0.139 4.139 9 C -0.169 4.169 10 C -0.019 4.019 11 N -0.838 5.838 12 S 2.718 3.282 13 O -0.981 6.981 14 O -0.998 6.998 15 C -0.615 4.615 16 C -0.594 4.594 17 H 0.053 0.947 18 C -0.177 4.177 19 N -0.571 5.571 20 Si 0.773 3.227 21 H -0.182 1.182 22 H -0.151 1.151 23 H -0.202 1.202 24 H 0.094 0.906 25 H 0.120 0.880 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.247 0.753 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.745 4.462 18.369 22.255 hybrid contribution -0.613 1.043 -0.438 1.286 sum 11.133 5.505 17.932 21.813 Atomic orbital electron populations 1.22813 0.94189 1.04999 1.03269 1.21185 0.93594 0.96586 0.83342 0.87420 1.21576 0.97657 0.99477 0.93005 0.92732 1.22186 0.99155 0.94019 0.84146 1.86419 1.85489 1.50854 1.17235 1.21444 0.93715 1.01287 0.97420 1.21897 1.02099 0.98547 0.94381 1.21728 0.78547 1.02048 0.99587 1.57744 1.18324 1.74935 1.32811 1.04527 0.72955 0.77330 0.73380 1.93525 1.52972 1.81099 1.70481 1.93401 1.71204 1.63720 1.71468 1.28371 1.06227 1.17908 1.08973 1.20333 1.28510 0.96205 1.14323 0.94706 1.26061 0.93536 1.04965 0.93183 1.70025 1.32666 1.36235 1.18208 0.85626 0.78944 0.76718 0.81449 1.18234 1.15091 1.20193 0.90561 0.88032 0.93469 0.91109 0.92531 0.75343 0.91155 0.89869 0.93679 0.88312 0.90106 0.88460 0.87985 0.87329 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.51 7.13 71.98 0.51 -5.00 16 2 C 0.16 3.87 2.99 45.12 0.13 4.00 16 3 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 4 C -0.10 -2.14 2.05 -10.57 -0.02 -2.16 16 5 H 0.05 1.53 8.13 -2.38 -0.02 1.51 16 6 C 0.08 1.34 6.31 71.98 0.45 1.79 16 7 O -0.59 -9.98 13.17 -148.98 -1.96 -11.94 16 8 C -0.10 -1.91 5.08 30.62 0.16 -1.75 16 9 C -0.13 -2.77 6.08 30.67 0.19 -2.58 16 10 C 0.11 2.63 6.47 86.36 0.56 3.19 16 11 N -1.00 -30.38 3.20 -490.03 -1.57 -31.95 16 12 S 2.62 110.83 4.76 -56.49 -0.27 110.56 16 13 O -0.99 -46.17 13.62 -127.65 -1.74 -47.91 16 14 O -1.01 -48.74 16.31 -127.65 -2.08 -50.82 16 15 C -0.48 -21.32 4.72 71.23 0.34 -20.99 16 16 C -0.56 -32.04 9.68 25.60 0.25 -31.79 16 17 H 0.03 2.27 7.96 -2.91 -0.02 2.25 16 18 C 0.02 1.36 5.47 84.65 0.46 1.82 16 19 N -0.93 -57.42 13.96 21.45 0.30 -57.12 16 20 Si 0.95 40.67 27.47 68.60 1.88 42.56 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.23 -8.40 6.54 99.48 0.65 -7.75 16 23 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 24 H 0.08 2.59 6.37 -2.39 -0.02 2.57 16 25 H 0.10 2.06 7.01 -2.39 -0.02 2.04 16 26 H 0.05 1.53 4.73 -2.39 -0.01 1.52 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.85 6.63 -2.39 -0.02 0.84 16 29 H 0.40 2.86 9.12 -74.06 -0.68 2.18 16 30 H 0.07 1.34 7.79 -2.39 -0.02 1.33 16 31 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.08 2.33 6.60 -2.39 -0.02 2.31 16 35 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.10 4.03 7.57 -2.39 -0.02 4.01 16 37 H 0.11 4.26 5.62 -2.39 -0.01 4.25 16 38 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -78.41 303.91 -2.07 -80.49 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.33 Total: 19.59 kcal Atomic # 6 Polarization: -56.49 SS G_CDS: 3.03 Total: -53.46 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -1.27 Total: -89.07 kcal Atomic # 8 Polarization: -104.88 SS G_CDS: -5.78 Total: -110.67 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 1.88 Total: 42.56 kcal Atomic # 16 Polarization: 110.83 SS G_CDS: -0.27 Total: 110.56 kcal Total: -78.41 -2.07 -80.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577747196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.113 kcal (2) G-P(sol) polarization free energy of solvation -78.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds