Wall clock time and date at job start Mon Mar 30 2020 01:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.58472 * 2 1 4 4 C 1.53191 * 109.58571 * 120.42870 * 2 1 3 5 5 H 1.09000 * 109.49879 * 185.10604 * 4 2 1 6 6 C 1.52999 * 109.50028 * 305.19864 * 4 2 1 7 7 O 1.42897 * 109.47256 * 184.99807 * 6 4 2 8 8 C 1.53044 * 109.31217 * 65.15362 * 4 2 1 9 9 C 1.53038 * 109.53645 * 61.36818 * 8 4 2 10 10 C 1.53631 * 109.24067 * 298.50568 * 9 8 4 11 11 N 1.46929 * 108.54041 * 54.86215 * 10 9 8 12 12 S 1.65595 * 120.63276 * 126.36845 * 11 10 9 13 13 O 1.42093 * 104.27935 * 153.64598 * 12 11 10 14 14 O 1.42105 * 104.27413 * 25.78649 * 12 11 10 15 15 C 1.81401 * 104.44822 * 269.72067 * 12 11 10 16 16 C 1.50703 * 109.47002 * 179.97438 * 15 12 11 17 17 H 1.07996 * 119.99751 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 12 19 19 N 1.31512 * 119.99923 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47093 * 90.00088 * 20 18 16 22 22 H 1.48500 * 109.47049 * 210.00797 * 20 18 16 23 23 H 1.48504 * 109.47189 * 330.00185 * 20 18 16 24 24 H 1.09003 * 109.47354 * 180.28044 * 1 2 3 25 25 H 1.09003 * 109.47440 * 300.28086 * 1 2 3 26 26 H 1.09003 * 109.46955 * 60.28112 * 1 2 3 27 27 H 1.09000 * 109.47193 * 305.00586 * 6 4 2 28 28 H 1.09010 * 109.46799 * 65.00035 * 6 4 2 29 29 H 0.96701 * 113.99757 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.45364 * 181.38518 * 8 4 2 31 31 H 1.08992 * 109.45991 * 301.34137 * 8 4 2 32 32 H 1.08996 * 109.50504 * 58.58711 * 9 8 4 33 33 H 1.09006 * 109.49674 * 178.68517 * 9 8 4 34 34 H 1.08995 * 109.74001 * 295.12729 * 10 9 8 35 35 H 1.08997 * 109.66121 * 174.55367 * 10 9 8 36 36 H 1.09002 * 109.47085 * 299.99812 * 15 12 11 37 37 H 1.09001 * 109.47417 * 59.99938 * 15 12 11 38 38 H 0.97000 * 119.99684 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7310 1.2445 5 1 3.1297 -0.6520 1.2905 6 6 1.4315 -0.0996 2.4966 7 8 1.9987 -0.7039 3.6606 8 6 1.6414 -2.2056 1.1673 9 6 2.2801 -2.8463 -0.0671 10 6 1.7643 -2.1382 -1.3292 11 7 2.0226 -0.6980 -1.1954 12 16 2.8471 0.1243 -2.3728 13 8 2.3827 1.4621 -2.2566 14 8 2.6172 -0.6312 -3.5542 15 6 4.5867 0.0086 -1.8719 16 6 5.4480 0.7279 -2.8778 17 1 4.9943 1.2064 -3.7330 18 6 6.8154 0.7742 -2.7067 19 7 7.5669 1.4024 -3.5843 20 14 7.6002 -0.0540 -1.2277 21 1 7.9402 -1.4586 -1.5695 22 1 8.8365 0.6766 -0.8494 23 1 6.6479 -0.0385 -0.0884 24 1 -0.3634 -1.0277 0.0050 25 1 -0.3634 0.5182 0.8875 26 1 -0.3633 0.5095 -0.8925 27 1 1.6410 0.9700 2.5036 28 1 0.3530 -0.2585 2.4935 29 1 1.6563 -0.3512 4.4933 30 1 1.9843 -2.7228 2.0634 31 1 0.5565 -2.2829 1.0964 32 1 3.3640 -2.7475 -0.0088 33 1 2.0123 -3.9021 -0.1087 34 1 0.6930 -2.3090 -1.4353 35 1 2.2864 -2.5233 -2.2050 36 1 4.7136 0.4665 -0.8909 37 1 4.8823 -1.0395 -1.8245 38 1 8.5289 1.4347 -3.4641 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577747198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:59 Heat of formation + Delta-G solvation = -134.682821 kcal Electronic energy + Delta-G solvation = -21233.032612 eV Core-core repulsion = 18009.184842 eV Total energy + Delta-G solvation = -3223.847770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.42574 -36.62380 -36.32957 -35.10258 -33.24451 -32.59045 -32.33191 -29.77200 -27.95359 -25.82661 -23.32870 -22.99968 -22.01609 -19.36900 -18.11262 -17.64023 -17.54007 -16.64139 -15.68646 -15.47107 -15.28929 -14.66349 -14.38535 -14.27032 -14.16887 -13.38194 -13.24652 -12.98770 -12.70787 -12.52262 -12.43743 -12.10964 -11.66017 -11.61289 -11.38819 -11.26872 -11.15398 -11.01277 -10.86045 -10.78681 -10.41672 -10.39582 -10.24266 -9.98349 -9.86236 -9.48762 -8.83537 -8.61697 -6.31653 -4.40549 1.12184 3.14819 3.23080 3.23848 3.32807 4.08216 4.22151 4.55903 4.65916 4.75999 4.87600 4.94942 5.06432 5.14100 5.16154 5.25803 5.28141 5.35480 5.44586 5.54399 5.66500 5.73005 5.80055 5.94847 5.96906 6.04969 6.13119 6.23199 6.25797 6.30781 6.45827 6.49858 6.92761 7.20774 7.47405 8.00391 8.59984 9.23930 10.79438 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018262 B = 0.007184 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.850735 B = 3896.433690 C = 4582.739208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.156 3.844 3 H 0.100 0.900 4 C -0.101 4.101 5 H 0.084 0.916 6 C 0.080 3.920 7 O -0.572 6.572 8 C -0.105 4.105 9 C -0.138 4.138 10 C 0.122 3.878 11 N -1.005 6.005 12 S 2.603 3.397 13 O -0.970 6.970 14 O -0.970 6.970 15 C -0.472 4.472 16 C -0.533 4.533 17 H 0.085 0.915 18 C 0.089 3.911 19 N -0.881 5.881 20 Si 0.883 3.117 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.262 1.262 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.376 0.624 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.012 -6.722 13.627 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.049 3.951 3 H 0.118 0.882 4 C -0.121 4.121 5 H 0.103 0.897 6 C 0.002 3.998 7 O -0.377 6.377 8 C -0.143 4.143 9 C -0.177 4.177 10 C -0.004 4.004 11 N -0.839 5.839 12 S 2.703 3.297 13 O -0.960 6.960 14 O -0.960 6.960 15 C -0.607 4.607 16 C -0.572 4.572 17 H 0.103 0.897 18 C -0.118 4.118 19 N -0.516 5.516 20 Si 0.709 3.291 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.187 1.187 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.223 0.777 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.930 -6.587 12.326 19.039 hybrid contribution 0.758 -0.260 1.563 1.756 sum -12.172 -6.847 13.889 19.697 Atomic orbital electron populations 1.22205 0.95244 1.02363 1.02329 1.20746 0.94610 0.96035 0.83705 0.88215 1.21545 1.01855 0.96242 0.92458 0.89726 1.22275 0.96349 0.95970 0.85221 1.86486 1.69148 1.66003 1.16092 1.21457 1.00310 0.94512 0.98011 1.22043 1.01385 0.99263 0.94990 1.21419 1.01141 0.79541 0.98285 1.58172 1.71730 1.17922 1.36116 1.05302 0.77792 0.73280 0.73339 1.93481 1.80209 1.36346 1.86007 1.93487 1.85546 1.71993 1.44993 1.28278 1.19111 1.05783 1.07495 1.20089 0.92068 1.36624 1.08420 0.89736 1.24895 0.96652 0.93992 0.96250 1.69872 1.05847 1.40781 1.35130 0.86716 0.79220 0.80025 0.83151 1.19631 1.20657 1.18690 0.91932 0.91790 0.91837 0.93327 0.93170 0.77718 0.91343 0.91904 0.91251 0.91034 0.91572 0.89044 0.89911 0.90292 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 8.51 37.16 0.32 -1.51 16 2 C 0.16 2.12 2.68 -67.60 -0.18 1.94 16 3 H 0.10 1.45 7.09 -51.93 -0.37 1.08 16 4 C -0.10 -1.22 2.35 -90.50 -0.21 -1.44 16 5 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 6 C 0.08 0.79 5.76 37.16 0.21 1.00 16 7 O -0.57 -5.80 13.18 -35.23 -0.46 -6.26 16 8 C -0.11 -1.16 4.87 -26.69 -0.13 -1.29 16 9 C -0.14 -1.58 6.10 -26.38 -0.16 -1.74 16 10 C 0.12 1.63 5.93 -3.48 -0.02 1.61 16 11 N -1.00 -15.90 2.92 -106.23 -0.31 -16.21 16 12 S 2.60 54.46 5.33 -107.50 -0.57 53.88 16 13 O -0.97 -22.42 16.72 -57.54 -0.96 -23.39 16 14 O -0.97 -22.57 16.71 -57.54 -0.96 -23.53 16 15 C -0.47 -10.76 5.00 36.01 0.18 -10.58 16 16 C -0.53 -15.07 9.68 -34.44 -0.33 -15.41 16 17 H 0.08 2.58 7.96 -52.49 -0.42 2.16 16 18 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 19 N -0.88 -26.38 13.96 55.43 0.77 -25.61 16 20 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 24 H 0.06 0.63 5.71 -51.93 -0.30 0.34 16 25 H 0.06 0.57 6.52 -51.93 -0.34 0.23 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.41 6.68 -51.92 -0.35 0.06 16 29 H 0.38 2.04 9.12 45.56 0.42 2.46 16 30 H 0.07 0.77 7.79 -51.93 -0.40 0.36 16 31 H 0.06 0.62 6.49 -51.93 -0.34 0.28 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.77 7.48 -51.93 -0.39 0.38 16 35 H 0.09 1.29 7.09 -51.93 -0.37 0.92 16 36 H 0.08 1.77 7.20 -51.92 -0.37 1.39 16 37 H 0.08 1.66 7.57 -51.92 -0.39 1.26 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 309.13 15.07 4.66 4.66 Total: -1.00 -34.93 309.13 -7.83 -42.76 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.90 Total: 2.57 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -0.43 Total: -24.99 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.46 Total: -41.82 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -2.39 Total: -53.17 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Atomic # 16 Polarization: 54.46 SS G_CDS: -0.57 Total: 53.88 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.93 -7.83 -42.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577747198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.922 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds