Wall clock time and date at job start Mon Mar 30 2020 01:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.58472 * 2 1 4 4 C 1.53191 * 109.58571 * 120.42870 * 2 1 3 5 5 H 1.09000 * 109.49879 * 185.10604 * 4 2 1 6 6 C 1.52999 * 109.50028 * 305.19864 * 4 2 1 7 7 O 1.42897 * 109.47256 * 184.99807 * 6 4 2 8 8 C 1.53044 * 109.31217 * 65.15362 * 4 2 1 9 9 C 1.53038 * 109.53645 * 61.36818 * 8 4 2 10 10 C 1.53631 * 109.24067 * 298.50568 * 9 8 4 11 11 N 1.46929 * 108.54041 * 54.86215 * 10 9 8 12 12 S 1.65595 * 120.63276 * 126.36845 * 11 10 9 13 13 O 1.42093 * 104.27935 * 153.64598 * 12 11 10 14 14 O 1.42105 * 104.27413 * 25.78649 * 12 11 10 15 15 C 1.81401 * 104.44822 * 269.72067 * 12 11 10 16 16 C 1.50703 * 109.47002 * 179.97438 * 15 12 11 17 17 H 1.07996 * 119.99751 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 12 19 19 N 1.31512 * 119.99923 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47093 * 90.00088 * 20 18 16 22 22 H 1.48500 * 109.47049 * 210.00797 * 20 18 16 23 23 H 1.48504 * 109.47189 * 330.00185 * 20 18 16 24 24 H 1.09003 * 109.47354 * 180.28044 * 1 2 3 25 25 H 1.09003 * 109.47440 * 300.28086 * 1 2 3 26 26 H 1.09003 * 109.46955 * 60.28112 * 1 2 3 27 27 H 1.09000 * 109.47193 * 305.00586 * 6 4 2 28 28 H 1.09010 * 109.46799 * 65.00035 * 6 4 2 29 29 H 0.96701 * 113.99757 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.45364 * 181.38518 * 8 4 2 31 31 H 1.08992 * 109.45991 * 301.34137 * 8 4 2 32 32 H 1.08996 * 109.50504 * 58.58711 * 9 8 4 33 33 H 1.09006 * 109.49674 * 178.68517 * 9 8 4 34 34 H 1.08995 * 109.74001 * 295.12729 * 10 9 8 35 35 H 1.08997 * 109.66121 * 174.55367 * 10 9 8 36 36 H 1.09002 * 109.47085 * 299.99812 * 15 12 11 37 37 H 1.09001 * 109.47417 * 59.99938 * 15 12 11 38 38 H 0.97000 * 119.99684 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7310 1.2445 5 1 3.1297 -0.6520 1.2905 6 6 1.4315 -0.0996 2.4966 7 8 1.9987 -0.7039 3.6606 8 6 1.6414 -2.2056 1.1673 9 6 2.2801 -2.8463 -0.0671 10 6 1.7643 -2.1382 -1.3292 11 7 2.0226 -0.6980 -1.1954 12 16 2.8471 0.1243 -2.3728 13 8 2.3827 1.4621 -2.2566 14 8 2.6172 -0.6312 -3.5542 15 6 4.5867 0.0086 -1.8719 16 6 5.4480 0.7279 -2.8778 17 1 4.9943 1.2064 -3.7330 18 6 6.8154 0.7742 -2.7067 19 7 7.5669 1.4024 -3.5843 20 14 7.6002 -0.0540 -1.2277 21 1 7.9402 -1.4586 -1.5695 22 1 8.8365 0.6766 -0.8494 23 1 6.6479 -0.0385 -0.0884 24 1 -0.3634 -1.0277 0.0050 25 1 -0.3634 0.5182 0.8875 26 1 -0.3633 0.5095 -0.8925 27 1 1.6410 0.9700 2.5036 28 1 0.3530 -0.2585 2.4935 29 1 1.6563 -0.3512 4.4933 30 1 1.9843 -2.7228 2.0634 31 1 0.5565 -2.2829 1.0964 32 1 3.3640 -2.7475 -0.0088 33 1 2.0123 -3.9021 -0.1087 34 1 0.6930 -2.3090 -1.4353 35 1 2.2864 -2.5233 -2.2050 36 1 4.7136 0.4665 -0.8909 37 1 4.8823 -1.0395 -1.8245 38 1 8.5289 1.4347 -3.4641 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577747198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:58 Heat of formation + Delta-G solvation = -163.703729 kcal Electronic energy + Delta-G solvation = -21234.291053 eV Core-core repulsion = 18009.184842 eV Total energy + Delta-G solvation = -3225.106211 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.40015 -38.11605 -37.40689 -36.88434 -35.35736 -33.60859 -33.31808 -31.79058 -28.88723 -26.71794 -25.11080 -24.25612 -22.98470 -20.59293 -19.59377 -19.23607 -18.38066 -18.34215 -17.43895 -16.96295 -16.17219 -16.14962 -15.70664 -15.41433 -15.27334 -14.75551 -14.45600 -14.35064 -14.18765 -13.89733 -13.60816 -13.34687 -13.10315 -13.09916 -13.03426 -12.67084 -12.60480 -12.33337 -12.28637 -12.05479 -11.90001 -11.79072 -11.34506 -11.27018 -11.14881 -10.96737 -10.69051 -9.85368 -8.48013 -6.64402 -0.55480 1.30063 1.32496 1.43983 1.88341 2.24158 2.83170 2.97418 3.24602 3.46483 3.57854 3.87958 4.05548 4.16575 4.24811 4.29518 4.38488 4.45323 4.47779 4.54630 4.57611 4.64300 4.83359 4.87874 4.90844 5.02586 5.11088 5.15970 5.18737 5.26351 5.37853 5.44991 5.59479 5.75768 5.78650 6.39854 6.99813 7.04411 8.67381 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018262 B = 0.007184 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.850735 B = 3896.433690 C = 4582.739208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.084 0.916 4 C -0.102 4.102 5 H 0.062 0.938 6 C 0.083 3.917 7 O -0.590 6.590 8 C -0.100 4.100 9 C -0.135 4.135 10 C 0.112 3.888 11 N -0.995 5.995 12 S 2.623 3.377 13 O -0.998 6.998 14 O -0.998 6.998 15 C -0.483 4.483 16 C -0.556 4.556 17 H 0.038 0.962 18 C 0.026 3.974 19 N -0.932 5.932 20 Si 0.951 3.049 21 H -0.256 1.256 22 H -0.275 1.275 23 H -0.237 1.237 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.397 0.603 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.374 -8.671 16.817 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.102 0.898 4 C -0.122 4.122 5 H 0.081 0.919 6 C 0.004 3.996 7 O -0.399 6.399 8 C -0.137 4.137 9 C -0.174 4.174 10 C -0.012 4.012 11 N -0.833 5.833 12 S 2.722 3.278 13 O -0.988 6.988 14 O -0.989 6.989 15 C -0.616 4.616 16 C -0.594 4.594 17 H 0.056 0.944 18 C -0.176 4.176 19 N -0.569 5.569 20 Si 0.771 3.229 21 H -0.181 1.181 22 H -0.200 1.200 23 H -0.160 1.160 24 H 0.098 0.902 25 H 0.110 0.890 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.246 0.754 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.300 -8.526 15.523 22.763 hybrid contribution 1.097 0.368 0.546 1.279 sum -13.203 -8.158 16.069 22.340 Atomic orbital electron populations 1.22215 0.92974 1.03702 1.02935 1.21023 0.96392 0.95301 0.83244 0.89791 1.21517 1.00693 0.97243 0.92770 0.91908 1.22228 0.97335 0.95746 0.84253 1.86423 1.69810 1.66473 1.17168 1.21441 1.01384 0.93326 0.97591 1.22055 1.00674 1.00582 0.94096 1.21732 1.02645 0.77718 0.99121 1.57781 1.70489 1.19086 1.35969 1.04343 0.77110 0.72743 0.73580 1.93433 1.80308 1.38434 1.86664 1.93439 1.85667 1.72484 1.47279 1.28326 1.20334 1.06279 1.06624 1.20355 0.93344 1.37132 1.08589 0.94356 1.26009 0.97169 0.94552 0.99830 1.70017 1.06521 1.42652 1.37685 0.85644 0.78585 0.79270 0.79352 1.18051 1.20022 1.15980 0.90205 0.88992 0.93471 0.93123 0.90800 0.75373 0.91117 0.89999 0.92457 0.88402 0.89193 0.90173 0.88172 0.88123 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 8.51 71.98 0.61 -2.48 16 2 C 0.15 3.69 2.68 44.97 0.12 3.81 16 3 H 0.08 2.37 7.09 -2.39 -0.02 2.36 16 4 C -0.10 -2.19 2.35 -10.72 -0.03 -2.21 16 5 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 6 C 0.08 1.34 5.76 71.98 0.41 1.75 16 7 O -0.59 -9.95 13.18 -148.98 -1.96 -11.92 16 8 C -0.10 -1.81 4.87 30.62 0.15 -1.66 16 9 C -0.14 -2.67 6.10 30.82 0.19 -2.48 16 10 C 0.11 2.74 5.93 86.51 0.51 3.25 16 11 N -1.00 -30.21 2.92 -489.99 -1.43 -31.64 16 12 S 2.62 111.42 5.33 -56.49 -0.30 111.11 16 13 O -1.00 -47.41 16.72 -127.65 -2.13 -49.55 16 14 O -1.00 -47.52 16.71 -127.65 -2.13 -49.65 16 15 C -0.48 -22.04 5.00 71.24 0.36 -21.68 16 16 C -0.56 -32.57 9.68 25.60 0.25 -32.32 16 17 H 0.04 2.51 7.96 -2.91 -0.02 2.48 16 18 C 0.03 1.51 5.47 84.65 0.46 1.97 16 19 N -0.93 -57.79 13.96 21.45 0.30 -57.49 16 20 Si 0.95 42.23 27.47 68.60 1.88 44.11 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.24 -9.45 6.54 99.48 0.65 -8.79 16 24 H 0.08 1.27 5.71 -2.39 -0.01 1.25 16 25 H 0.09 1.27 6.52 -2.39 -0.02 1.25 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.85 6.68 -2.38 -0.02 0.84 16 29 H 0.40 2.94 9.12 -74.06 -0.68 2.26 16 30 H 0.07 1.30 7.79 -2.39 -0.02 1.28 16 31 H 0.08 1.19 6.49 -2.39 -0.02 1.18 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.09 1.80 7.48 -2.39 -0.02 1.78 16 35 H 0.08 2.16 7.09 -2.39 -0.02 2.14 16 36 H 0.10 4.19 7.20 -2.39 -0.02 4.17 16 37 H 0.10 4.13 7.57 -2.39 -0.02 4.11 16 38 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -78.50 309.13 -2.41 -80.91 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.33 Total: 16.16 kcal Atomic # 6 Polarization: -55.09 SS G_CDS: 3.04 Total: -52.05 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -1.13 Total: -89.13 kcal Atomic # 8 Polarization: -104.88 SS G_CDS: -6.23 Total: -111.11 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.11 kcal Atomic # 16 Polarization: 111.42 SS G_CDS: -0.30 Total: 111.11 kcal Total: -78.50 -2.41 -80.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577747198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.797 kcal (2) G-P(sol) polarization free energy of solvation -78.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds