Wall clock time and date at job start Mon Mar 30 2020 01:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.58605 * 2 1 4 4 C 1.53188 * 109.59057 * 239.71546 * 2 1 3 5 5 H 1.09002 * 109.50311 * 174.89340 * 4 2 1 6 6 C 1.53000 * 109.49535 * 54.79690 * 4 2 1 7 7 O 1.42906 * 109.47035 * 175.00126 * 6 4 2 8 8 C 1.53045 * 109.30921 * 294.84846 * 4 2 1 9 9 C 1.53040 * 109.53792 * 298.63109 * 8 4 2 10 10 C 1.53187 * 109.31158 * 61.36683 * 9 8 4 11 11 N 1.46924 * 108.77706 * 305.36518 * 10 9 8 12 12 S 1.65600 * 120.63162 * 233.58573 * 11 10 9 13 13 O 1.42101 * 104.27567 * 26.09427 * 12 11 10 14 14 O 1.42098 * 104.27966 * 153.94867 * 12 11 10 15 15 C 1.81393 * 104.45220 * 270.02494 * 12 11 10 16 16 C 1.50696 * 109.47328 * 180.02562 * 15 12 11 17 17 H 1.08003 * 120.00040 * 359.97438 * 16 15 12 18 18 C 1.37881 * 119.99963 * 179.97438 * 16 15 12 19 19 N 1.31509 * 120.00033 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99775 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47013 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47047 * 120.00144 * 20 18 16 23 23 H 1.48498 * 109.46791 * 239.99760 * 20 18 16 24 24 H 1.09002 * 109.47153 * 180.28370 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.28560 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.28542 * 1 2 3 27 27 H 1.08998 * 109.47306 * 295.00355 * 6 4 2 28 28 H 1.08995 * 109.47017 * 55.00408 * 6 4 2 29 29 H 0.96697 * 113.99892 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46030 * 58.65869 * 8 4 2 31 31 H 1.09003 * 109.45458 * 178.62691 * 8 4 2 32 32 H 1.08995 * 109.49401 * 181.31887 * 9 8 4 33 33 H 1.08995 * 109.49614 * 301.41457 * 9 8 4 34 34 H 1.09004 * 109.58913 * 65.15279 * 10 9 8 35 35 H 1.09001 * 109.58653 * 185.42948 * 10 9 8 36 36 H 1.09002 * 109.46959 * 299.99919 * 15 12 11 37 37 H 1.09003 * 109.47246 * 59.99508 * 15 12 11 38 38 H 0.97006 * 119.99967 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 3.1298 -0.6487 -1.2921 6 6 1.4315 -0.0933 -2.4967 7 8 1.9988 -0.6946 -3.6624 8 6 1.6415 -2.2026 -1.1727 9 6 2.2801 -2.8464 0.0601 10 6 1.7692 -2.1426 1.3211 11 7 2.0225 -0.7010 1.1936 12 16 2.8470 0.1184 2.3731 13 8 3.6605 -0.8731 2.9852 14 8 3.4261 1.2234 1.6928 15 6 1.5582 0.6806 3.5191 16 6 2.1919 1.4493 4.6498 17 1 3.2630 1.5856 4.6766 18 6 1.4044 1.9786 5.6502 19 7 0.1001 1.8130 5.6173 20 14 2.1900 2.9308 7.0522 21 1 3.6616 2.9740 6.8577 22 1 1.6521 4.3148 7.0731 23 1 1.8808 2.2600 8.3405 24 1 -0.3633 -1.0277 0.0051 25 1 -0.3633 0.5094 -0.8926 26 1 -0.3634 0.5183 0.8874 27 1 0.3532 -0.2522 -2.4941 28 1 1.6411 0.9763 -2.5011 29 1 1.6564 -0.3399 -4.4942 30 1 0.5565 -2.2801 -1.1021 31 1 1.9847 -2.7177 -2.0700 32 1 2.0123 -3.9023 0.0989 33 1 3.3639 -2.7474 0.0019 34 1 0.6987 -2.3173 1.4289 35 1 2.2926 -2.5320 2.1944 36 1 0.8574 1.3259 2.9894 37 1 1.0261 -0.1825 3.9192 38 1 -0.4539 2.1851 6.3212 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577747199.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:00 Heat of formation + Delta-G solvation = -139.251651 kcal Electronic energy + Delta-G solvation = -21024.759154 eV Core-core repulsion = 17800.713264 eV Total energy + Delta-G solvation = -3224.045890 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.32616 -36.56315 -36.20849 -34.97978 -33.35468 -32.48710 -32.27335 -29.01603 -27.82807 -25.73523 -23.68769 -22.96722 -21.96305 -19.32802 -18.00399 -17.47696 -17.32698 -16.44415 -15.55141 -15.39881 -15.18180 -14.59832 -14.41968 -14.21655 -14.01398 -13.32323 -13.17019 -12.89129 -12.50586 -12.42675 -12.11702 -11.97751 -11.54605 -11.42541 -11.31877 -11.15645 -11.07700 -10.94013 -10.83950 -10.63269 -10.62162 -10.30347 -10.22191 -9.89147 -9.78751 -9.34423 -8.73032 -8.43677 -6.34482 -4.44991 1.29096 3.18894 3.25949 3.33181 3.44404 4.14172 4.23234 4.65369 4.80814 4.87182 4.97541 5.03077 5.13575 5.22614 5.28009 5.36172 5.39542 5.43902 5.54340 5.65964 5.78312 5.82603 5.90183 6.02757 6.07969 6.15917 6.23888 6.35080 6.52916 6.56908 6.64072 6.80695 7.07976 7.43860 7.51692 7.74302 8.57436 9.22840 10.77205 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031211 B = 0.005159 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.903668 B = 5425.962295 C = 5596.565325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.154 3.846 3 H 0.102 0.898 4 C -0.093 4.093 5 H 0.081 0.919 6 C 0.080 3.920 7 O -0.573 6.573 8 C -0.107 4.107 9 C -0.131 4.131 10 C 0.118 3.882 11 N -1.002 6.002 12 S 2.580 3.420 13 O -0.978 6.978 14 O -0.979 6.979 15 C -0.418 4.418 16 C -0.534 4.534 17 H 0.069 0.931 18 C 0.077 3.923 19 N -0.879 5.879 20 Si 0.904 3.096 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.376 0.624 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.524 -5.884 -14.191 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.047 3.953 3 H 0.120 0.880 4 C -0.113 4.113 5 H 0.099 0.901 6 C 0.002 3.998 7 O -0.378 6.378 8 C -0.144 4.144 9 C -0.170 4.170 10 C -0.007 4.007 11 N -0.837 5.837 12 S 2.682 3.318 13 O -0.969 6.969 14 O -0.970 6.970 15 C -0.554 4.554 16 C -0.574 4.574 17 H 0.087 0.913 18 C -0.130 4.130 19 N -0.515 5.515 20 Si 0.729 3.271 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.222 0.778 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.387 -6.101 -13.639 15.005 hybrid contribution -0.778 0.861 0.504 1.265 sum -2.165 -5.240 -13.135 14.306 Atomic orbital electron populations 1.22317 0.95400 1.02688 1.02549 1.20756 0.94026 0.96498 0.84029 0.88014 1.21435 1.01577 0.96015 0.92311 0.90063 1.22297 0.96407 0.95998 0.85147 1.86478 1.69166 1.66087 1.16099 1.21484 1.00389 0.94623 0.97948 1.21862 1.01182 0.99041 0.94906 1.21335 1.00647 0.79809 0.98921 1.58050 1.74972 1.16873 1.33793 1.06011 0.77549 0.73552 0.74647 1.93458 1.66549 1.59510 1.77351 1.93453 1.76362 1.54165 1.72997 1.27772 1.11258 1.07084 1.09263 1.20384 0.93769 1.36286 1.06924 0.91295 1.24922 0.94783 0.95288 0.97963 1.69960 1.03989 1.43808 1.33719 0.86331 0.80060 0.79491 0.81171 1.18971 1.20321 1.20316 0.91813 0.91850 0.91413 0.93111 0.93345 0.77781 0.91850 0.91494 0.91187 0.91568 0.91829 0.88890 0.89833 0.89813 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 8.53 37.16 0.32 -1.78 16 2 C 0.15 2.25 2.79 -67.60 -0.19 2.06 16 3 H 0.10 1.60 6.87 -51.93 -0.36 1.25 16 4 C -0.09 -1.22 2.36 -90.50 -0.21 -1.43 16 5 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 6 C 0.08 0.84 5.76 37.16 0.21 1.05 16 7 O -0.57 -5.99 13.18 -35.23 -0.46 -6.45 16 8 C -0.11 -1.27 4.87 -26.69 -0.13 -1.40 16 9 C -0.13 -1.64 6.08 -26.61 -0.16 -1.81 16 10 C 0.12 1.72 6.01 -3.71 -0.02 1.69 16 11 N -1.00 -16.90 2.93 -106.48 -0.31 -17.21 16 12 S 2.58 55.83 5.37 -107.50 -0.58 55.25 16 13 O -0.98 -23.31 16.59 -57.54 -0.95 -24.27 16 14 O -0.98 -23.26 16.59 -57.54 -0.95 -24.21 16 15 C -0.42 -10.09 5.93 36.00 0.21 -9.88 16 16 C -0.53 -14.81 9.13 -34.44 -0.31 -15.12 16 17 H 0.07 1.89 7.71 -52.48 -0.40 1.49 16 18 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 19 N -0.88 -24.71 13.29 55.43 0.74 -23.97 16 20 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H 0.06 0.72 5.72 -51.93 -0.30 0.42 16 25 H 0.06 0.63 6.48 -51.93 -0.34 0.29 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.45 6.67 -51.93 -0.35 0.11 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.38 2.13 9.12 45.56 0.42 2.54 16 30 H 0.06 0.68 6.51 -51.93 -0.34 0.34 16 31 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.80 7.48 -51.93 -0.39 0.41 16 35 H 0.09 1.44 6.87 -51.93 -0.36 1.08 16 36 H 0.08 1.99 8.14 -51.92 -0.42 1.57 16 37 H 0.08 2.01 8.14 -51.92 -0.42 1.58 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -33.84 312.25 -8.13 -41.97 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -4.91 Total: 2.82 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -0.38 Total: -24.59 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.42 Total: -41.18 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -2.37 Total: -54.94 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 55.83 SS G_CDS: -0.58 Total: 55.25 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.84 -8.13 -41.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577747199.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.280 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds