Wall clock time and date at job start Mon Mar 30 2020 01:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.58605 * 2 1 4 4 C 1.53188 * 109.59057 * 239.71546 * 2 1 3 5 5 H 1.09002 * 109.50311 * 174.89340 * 4 2 1 6 6 C 1.53000 * 109.49535 * 54.79690 * 4 2 1 7 7 O 1.42906 * 109.47035 * 175.00126 * 6 4 2 8 8 C 1.53045 * 109.30921 * 294.84846 * 4 2 1 9 9 C 1.53040 * 109.53792 * 298.63109 * 8 4 2 10 10 C 1.53187 * 109.31158 * 61.36683 * 9 8 4 11 11 N 1.46924 * 108.77706 * 305.36518 * 10 9 8 12 12 S 1.65600 * 120.63162 * 233.58573 * 11 10 9 13 13 O 1.42101 * 104.27567 * 26.09427 * 12 11 10 14 14 O 1.42098 * 104.27966 * 153.94867 * 12 11 10 15 15 C 1.81393 * 104.45220 * 270.02494 * 12 11 10 16 16 C 1.50696 * 109.47328 * 180.02562 * 15 12 11 17 17 H 1.08003 * 120.00040 * 359.97438 * 16 15 12 18 18 C 1.37881 * 119.99963 * 179.97438 * 16 15 12 19 19 N 1.31509 * 120.00033 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99775 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47013 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47047 * 120.00144 * 20 18 16 23 23 H 1.48498 * 109.46791 * 239.99760 * 20 18 16 24 24 H 1.09002 * 109.47153 * 180.28370 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.28560 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.28542 * 1 2 3 27 27 H 1.08998 * 109.47306 * 295.00355 * 6 4 2 28 28 H 1.08995 * 109.47017 * 55.00408 * 6 4 2 29 29 H 0.96697 * 113.99892 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46030 * 58.65869 * 8 4 2 31 31 H 1.09003 * 109.45458 * 178.62691 * 8 4 2 32 32 H 1.08995 * 109.49401 * 181.31887 * 9 8 4 33 33 H 1.08995 * 109.49614 * 301.41457 * 9 8 4 34 34 H 1.09004 * 109.58913 * 65.15279 * 10 9 8 35 35 H 1.09001 * 109.58653 * 185.42948 * 10 9 8 36 36 H 1.09002 * 109.46959 * 299.99919 * 15 12 11 37 37 H 1.09003 * 109.47246 * 59.99508 * 15 12 11 38 38 H 0.97006 * 119.99967 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 3.1298 -0.6487 -1.2921 6 6 1.4315 -0.0933 -2.4967 7 8 1.9988 -0.6946 -3.6624 8 6 1.6415 -2.2026 -1.1727 9 6 2.2801 -2.8464 0.0601 10 6 1.7692 -2.1426 1.3211 11 7 2.0225 -0.7010 1.1936 12 16 2.8470 0.1184 2.3731 13 8 3.6605 -0.8731 2.9852 14 8 3.4261 1.2234 1.6928 15 6 1.5582 0.6806 3.5191 16 6 2.1919 1.4493 4.6498 17 1 3.2630 1.5856 4.6766 18 6 1.4044 1.9786 5.6502 19 7 0.1001 1.8130 5.6173 20 14 2.1900 2.9308 7.0522 21 1 3.6616 2.9740 6.8577 22 1 1.6521 4.3148 7.0731 23 1 1.8808 2.2600 8.3405 24 1 -0.3633 -1.0277 0.0051 25 1 -0.3633 0.5094 -0.8926 26 1 -0.3634 0.5183 0.8874 27 1 0.3532 -0.2522 -2.4941 28 1 1.6411 0.9763 -2.5011 29 1 1.6564 -0.3399 -4.4942 30 1 0.5565 -2.2801 -1.1021 31 1 1.9847 -2.7177 -2.0700 32 1 2.0123 -3.9023 0.0989 33 1 3.3639 -2.7474 0.0019 34 1 0.6987 -2.3173 1.4289 35 1 2.2926 -2.5320 2.1944 36 1 0.8574 1.3259 2.9894 37 1 1.0261 -0.1825 3.9192 38 1 -0.4539 2.1851 6.3212 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577747199.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:00 Heat of formation + Delta-G solvation = -166.126645 kcal Electronic energy + Delta-G solvation = -21025.924541 eV Core-core repulsion = 17800.713264 eV Total energy + Delta-G solvation = -3225.211277 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.40124 -38.07101 -37.41706 -36.84368 -35.42164 -33.60639 -33.36829 -31.03463 -28.86209 -26.72218 -25.62369 -24.17897 -23.02439 -20.63329 -19.30598 -19.14871 -18.40377 -18.24459 -17.36557 -16.92774 -16.24778 -16.10855 -15.76035 -15.40157 -15.23424 -14.62374 -14.37934 -14.23735 -14.07832 -13.88114 -13.43850 -13.36628 -13.12114 -13.08470 -13.01607 -12.75830 -12.64921 -12.51663 -12.31400 -12.03316 -11.79124 -11.67991 -11.34919 -11.28063 -11.09515 -10.79841 -10.71010 -9.80430 -8.42759 -6.61078 -0.46596 1.36093 1.36727 1.51008 1.90203 2.30385 2.90718 3.03862 3.26272 3.47760 3.59296 3.87899 4.04713 4.19052 4.24028 4.29902 4.45203 4.49770 4.51937 4.61731 4.69735 4.78042 4.85301 4.87094 4.92617 5.02541 5.07556 5.14823 5.25524 5.30001 5.36694 5.44909 5.59014 5.71340 5.78980 6.49063 6.98982 7.10654 8.69732 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031211 B = 0.005159 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.903668 B = 5425.962295 C = 5596.565325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.145 3.855 3 H 0.084 0.916 4 C -0.094 4.094 5 H 0.053 0.947 6 C 0.084 3.916 7 O -0.590 6.590 8 C -0.101 4.101 9 C -0.128 4.128 10 C 0.109 3.891 11 N -0.997 5.997 12 S 2.610 3.390 13 O -1.002 7.002 14 O -1.003 7.003 15 C -0.427 4.427 16 C -0.569 4.569 17 H 0.060 0.940 18 C 0.029 3.971 19 N -0.905 5.905 20 Si 0.962 3.038 21 H -0.266 1.266 22 H -0.265 1.265 23 H -0.265 1.265 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.397 0.603 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 -6.463 -15.333 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.039 3.961 3 H 0.102 0.898 4 C -0.115 4.115 5 H 0.072 0.928 6 C 0.006 3.994 7 O -0.398 6.398 8 C -0.138 4.138 9 C -0.167 4.167 10 C -0.016 4.016 11 N -0.835 5.835 12 S 2.711 3.289 13 O -0.993 6.993 14 O -0.994 6.994 15 C -0.561 4.561 16 C -0.608 4.608 17 H 0.078 0.922 18 C -0.175 4.175 19 N -0.542 5.542 20 Si 0.784 3.216 21 H -0.190 1.190 22 H -0.190 1.190 23 H -0.190 1.190 24 H 0.098 0.902 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.247 0.753 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.512 -6.667 -14.785 16.411 hybrid contribution -0.446 0.991 0.758 1.324 sum -2.957 -5.676 -14.027 15.418 Atomic orbital electron populations 1.22309 0.93079 1.03934 1.03172 1.21009 0.95832 0.95623 0.83626 0.89836 1.21401 1.00071 0.97170 0.92813 0.92845 1.22216 0.97357 0.95716 0.84134 1.86417 1.69798 1.66499 1.17131 1.21466 1.01478 0.93350 0.97514 1.21876 1.00102 1.00551 0.94192 1.21640 1.02247 0.78070 0.99639 1.57699 1.74794 1.17866 1.33093 1.04775 0.76801 0.72903 0.74421 1.93416 1.67369 1.59992 1.78512 1.93411 1.76952 1.55736 1.73292 1.27805 1.12171 1.06561 1.09526 1.20777 0.93796 1.37516 1.08713 0.92203 1.25790 0.95353 0.96019 1.00330 1.70023 1.05013 1.44429 1.34726 0.85445 0.79113 0.78691 0.78337 1.18961 1.18981 1.19015 0.90167 0.88948 0.93150 0.90662 0.93168 0.75299 0.89804 0.90981 0.88307 0.93407 0.89219 0.90297 0.90215 0.90265 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.70 8.53 71.98 0.61 -3.08 16 2 C 0.14 4.11 2.79 44.97 0.13 4.24 16 3 H 0.08 2.66 6.87 -2.39 -0.02 2.65 16 4 C -0.09 -2.32 2.36 -10.72 -0.03 -2.34 16 5 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 6 C 0.08 1.54 5.76 71.98 0.41 1.96 16 7 O -0.59 -10.77 13.18 -148.98 -1.96 -12.73 16 8 C -0.10 -2.10 4.87 30.62 0.15 -1.95 16 9 C -0.13 -2.97 6.08 30.67 0.19 -2.79 16 10 C 0.11 3.02 6.01 86.36 0.52 3.54 16 11 N -1.00 -33.49 2.93 -490.79 -1.44 -34.93 16 12 S 2.61 116.13 5.37 -56.49 -0.30 115.83 16 13 O -1.00 -49.05 16.59 -127.65 -2.12 -51.17 16 14 O -1.00 -49.13 16.59 -127.65 -2.12 -51.25 16 15 C -0.43 -21.25 5.93 71.23 0.42 -20.82 16 16 C -0.57 -32.37 9.13 25.60 0.23 -32.13 16 17 H 0.06 3.40 7.71 -2.91 -0.02 3.38 16 18 C 0.03 1.59 5.46 84.66 0.46 2.05 16 19 N -0.91 -51.29 13.29 21.45 0.28 -51.00 16 20 Si 0.96 42.93 29.54 68.60 2.03 44.96 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H 0.08 1.52 5.72 -2.39 -0.01 1.50 16 25 H 0.09 1.52 6.48 -2.39 -0.02 1.50 16 26 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.08 1.03 6.67 -2.39 -0.02 1.01 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.40 3.32 9.12 -74.06 -0.68 2.65 16 30 H 0.08 1.43 6.51 -2.39 -0.02 1.42 16 31 H 0.07 1.48 7.79 -2.39 -0.02 1.46 16 32 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 2.04 7.48 -2.38 -0.02 2.02 16 35 H 0.08 2.43 6.87 -2.39 -0.02 2.41 16 36 H 0.08 3.94 8.14 -2.39 -0.02 3.93 16 37 H 0.08 3.93 8.14 -2.39 -0.02 3.91 16 38 H 0.27 14.34 8.31 -92.70 -0.77 13.57 16 Total: -1.00 -73.45 312.25 -2.14 -75.59 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.39 Total: 16.03 kcal Atomic # 6 Polarization: -54.44 SS G_CDS: 3.10 Total: -51.33 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -1.15 Total: -85.93 kcal Atomic # 8 Polarization: -108.94 SS G_CDS: -6.20 Total: -115.14 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 116.13 SS G_CDS: -0.30 Total: 115.83 kcal Total: -73.45 -2.14 -75.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577747199.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.541 kcal (2) G-P(sol) polarization free energy of solvation -73.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds