Wall clock time and date at job start Mon Mar 30 2020 02:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00080 * 2 1 4 4 C 1.52997 * 109.47212 * 275.00347 * 3 2 1 5 5 H 1.09007 * 110.43783 * 307.54183 * 4 3 2 6 6 C 1.54890 * 110.48670 * 70.22087 * 4 3 2 7 7 C 1.54888 * 102.74996 * 156.61991 * 6 4 3 8 8 C 1.54270 * 104.19756 * 322.06245 * 7 6 4 9 9 C 1.53874 * 106.59709 * 23.60720 * 8 7 6 10 10 H 1.09000 * 110.03288 * 119.28794 * 9 8 7 11 11 O 1.42896 * 110.03310 * 240.71541 * 9 8 7 12 12 S 1.65596 * 120.00265 * 180.02562 * 2 1 3 13 13 O 1.42101 * 104.27728 * 26.06466 * 12 2 1 14 14 O 1.42101 * 104.28108 * 153.92463 * 12 2 1 15 15 C 1.81403 * 104.45087 * 269.99629 * 12 2 1 16 16 C 1.50695 * 109.47405 * 179.97438 * 15 12 2 17 17 H 1.08007 * 119.99967 * 359.97438 * 16 15 12 18 18 C 1.37881 * 120.00095 * 180.02562 * 16 15 12 19 19 N 1.31516 * 120.00079 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99743 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47180 * 90.00315 * 20 18 16 22 22 H 1.48507 * 109.46867 * 210.00042 * 20 18 16 23 23 H 1.48501 * 109.47417 * 329.99969 * 20 18 16 24 24 H 1.08993 * 109.47522 * 90.00073 * 1 2 3 25 25 H 1.08998 * 109.46906 * 210.00311 * 1 2 3 26 26 H 1.09003 * 109.46940 * 329.99268 * 1 2 3 27 27 H 1.09002 * 109.47068 * 35.00407 * 3 2 1 28 28 H 1.09001 * 109.47372 * 155.00495 * 3 2 1 29 29 H 1.08998 * 110.75888 * 274.94005 * 6 4 3 30 30 H 1.09004 * 110.75395 * 38.30810 * 6 4 3 31 31 H 1.08998 * 110.49376 * 203.38070 * 7 6 4 32 32 H 1.09001 * 110.59695 * 80.79264 * 7 6 4 33 33 H 1.09001 * 110.03076 * 264.32096 * 8 7 6 34 34 H 1.09000 * 110.03315 * 142.88945 * 8 7 6 35 35 H 0.96698 * 114.00550 * 297.16937 * 11 9 8 36 36 H 1.09000 * 109.47162 * 299.99966 * 15 12 2 37 37 H 1.09000 * 109.47109 * 59.99791 * 15 12 2 38 38 H 0.96998 * 120.00305 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3435 1.7733 -1.4370 5 1 2.7695 0.9963 -2.0718 6 6 0.9736 2.2385 -1.9901 7 6 1.3759 3.2272 -3.1124 8 6 2.6034 3.9676 -2.5423 9 6 3.2186 3.0432 -1.4771 10 1 4.2407 2.7838 -1.7531 11 8 3.2041 3.6881 -0.2020 12 16 2.2930 -1.4341 -0.0006 13 8 1.3969 -2.3559 -0.6061 14 8 3.5395 -1.1188 -0.6058 15 6 2.5194 -1.8268 1.7558 16 6 3.2695 -3.1272 1.8872 17 1 3.5788 -3.6640 1.0025 18 6 3.5602 -3.6323 3.1368 19 7 4.2144 -4.7674 3.2514 20 14 3.0247 -2.7041 4.6669 21 1 1.6699 -3.1574 5.0720 22 1 3.9852 -2.9693 5.7681 23 1 2.9936 -1.2480 4.3771 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8899 0.5140 27 1 1.6501 2.0043 0.5895 28 1 3.1858 1.1177 0.4342 29 1 0.4159 1.3960 -2.3990 30 1 0.3969 2.7459 -1.2167 31 1 0.5658 3.9287 -3.3114 32 1 1.6439 2.6877 -4.0208 33 1 2.2937 4.9081 -2.0867 34 1 3.3269 4.1567 -3.3353 35 1 3.7367 4.4942 -0.1628 36 1 3.0867 -1.0296 2.2362 37 1 1.5453 -1.9196 2.2359 38 1 4.4185 -5.1229 4.1305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581261379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:31 Heat of formation + Delta-G solvation = -134.172001 kcal Electronic energy + Delta-G solvation = -20764.978166 eV Core-core repulsion = 17541.152547 eV Total energy + Delta-G solvation = -3223.825619 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.25737 -36.24402 -35.99604 -35.01409 -34.62317 -33.21723 -30.10672 -29.72505 -27.87859 -26.36020 -23.58643 -22.82542 -20.87146 -19.95349 -18.20103 -17.54397 -17.40433 -16.37355 -16.03524 -15.53770 -15.33782 -14.84836 -14.37165 -14.18033 -13.79440 -13.49377 -13.31509 -12.68882 -12.62699 -12.47827 -12.34830 -11.94512 -11.61147 -11.52945 -11.29846 -11.20794 -11.14128 -11.05512 -10.84001 -10.74713 -10.57349 -10.41678 -10.28552 -9.96607 -9.88114 -9.49066 -8.81592 -8.54127 -6.29708 -4.38365 1.18871 3.16259 3.24225 3.25493 3.44830 4.15085 4.24025 4.45659 4.49720 4.71461 4.82479 4.88911 5.02549 5.13615 5.25474 5.30596 5.35967 5.52775 5.53611 5.65674 5.70576 5.73954 5.82749 5.90843 5.94534 6.01435 6.10707 6.12582 6.25182 6.29331 6.44042 6.49663 7.00557 7.23349 7.58609 8.02494 8.62065 9.25942 10.81440 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027686 B = 0.005248 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.093436 B = 5333.605574 C = 5641.604544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.015 6.015 3 C 0.147 3.853 4 C -0.104 4.104 5 H 0.093 0.907 6 C -0.116 4.116 7 C -0.124 4.124 8 C -0.156 4.156 9 C 0.105 3.895 10 H 0.061 0.939 11 O -0.561 6.561 12 S 2.604 3.396 13 O -0.972 6.972 14 O -0.969 6.969 15 C -0.474 4.474 16 C -0.533 4.533 17 H 0.085 0.915 18 C 0.088 3.912 19 N -0.881 5.881 20 Si 0.884 3.116 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.263 1.263 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.374 0.626 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.043 18.828 -7.342 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.851 5.851 3 C 0.021 3.979 4 C -0.124 4.124 5 H 0.111 0.889 6 C -0.154 4.154 7 C -0.162 4.162 8 C -0.194 4.194 9 C 0.045 3.955 10 H 0.079 0.921 11 O -0.367 6.367 12 S 2.702 3.298 13 O -0.962 6.962 14 O -0.960 6.960 15 C -0.609 4.609 16 C -0.572 4.572 17 H 0.103 0.897 18 C -0.118 4.118 19 N -0.517 5.517 20 Si 0.709 3.291 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.187 1.187 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.221 0.779 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.117 17.740 -7.869 20.348 hybrid contribution 0.071 1.035 1.294 1.658 sum -6.046 18.775 -6.575 20.791 Atomic orbital electron populations 1.21384 0.79419 1.02385 1.01537 1.57841 1.14696 1.21980 1.90588 1.20945 0.96890 0.84721 0.95345 1.22557 0.95445 0.95630 0.98817 0.88861 1.22603 0.96749 0.98435 0.97576 1.22315 0.97174 0.98179 0.98485 1.22922 0.98228 0.99298 0.98922 1.22461 0.98348 0.91943 0.82757 0.92102 1.86542 1.73892 1.43470 1.32766 1.05311 0.73226 0.71927 0.79312 1.93486 1.65058 1.62080 1.75588 1.93482 1.44057 1.82905 1.75523 1.28273 1.05916 1.07128 1.19557 1.20098 1.38159 1.02949 0.95946 0.89731 1.24901 0.93496 0.94446 0.98987 1.69873 1.38200 1.18844 1.24794 0.86706 0.79091 0.80937 0.82319 1.19640 1.20648 1.18708 0.93019 0.91278 0.91720 0.90104 0.89984 0.91207 0.91179 0.91785 0.91595 0.90998 0.91579 0.77950 0.89839 0.90358 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.31 9.30 59.84 0.56 1.87 16 2 N -1.02 -16.46 3.10 -121.76 -0.38 -16.84 16 3 C 0.15 2.15 3.96 -4.04 -0.02 2.13 16 4 C -0.10 -1.38 3.07 -88.96 -0.27 -1.65 16 5 H 0.09 1.41 8.00 -51.93 -0.42 0.99 16 6 C -0.12 -1.28 5.31 -24.74 -0.13 -1.41 16 7 C -0.12 -1.15 6.83 -25.07 -0.17 -1.32 16 8 C -0.16 -1.36 6.61 -25.61 -0.17 -1.53 16 9 C 0.10 1.14 4.12 -25.61 -0.11 1.03 16 10 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 11 O -0.56 -5.84 11.74 -35.23 -0.41 -6.26 16 12 S 2.60 55.34 5.24 -107.50 -0.56 54.78 16 13 O -0.97 -22.95 17.09 -57.54 -0.98 -23.93 16 14 O -0.97 -22.60 16.84 -57.54 -0.97 -23.57 16 15 C -0.47 -10.97 5.00 36.00 0.18 -10.79 16 16 C -0.53 -15.20 9.68 -34.44 -0.33 -15.54 16 17 H 0.08 2.60 7.96 -52.48 -0.42 2.18 16 18 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 19 N -0.88 -26.51 13.96 55.43 0.77 -25.74 16 20 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 24 H 0.05 0.64 7.07 -51.93 -0.37 0.27 16 25 H 0.07 0.93 7.79 -51.93 -0.40 0.52 16 26 H 0.06 0.68 7.94 -51.93 -0.41 0.27 16 27 H 0.08 1.06 7.40 -51.93 -0.38 0.68 16 28 H 0.08 1.30 7.61 -51.93 -0.40 0.90 16 29 H 0.07 0.79 7.12 -51.93 -0.37 0.42 16 30 H 0.07 0.74 7.97 -51.93 -0.41 0.33 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.57 7.95 -51.93 -0.41 0.15 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.37 2.28 9.11 45.56 0.42 2.70 16 36 H 0.08 1.81 7.20 -51.92 -0.37 1.44 16 37 H 0.08 1.66 7.57 -51.92 -0.39 1.27 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 317.11 15.07 4.78 4.78 Total: -1.00 -34.68 317.11 -8.19 -42.86 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.20 Total: 2.53 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: -0.56 Total: -24.78 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.40 Total: -42.58 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -2.37 Total: -53.76 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Atomic # 16 Polarization: 55.34 SS G_CDS: -0.56 Total: 54.78 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.68 -8.19 -42.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581261379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.308 kcal (2) G-P(sol) polarization free energy of solvation -34.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds