Wall clock time and date at job start Mon Mar 30 2020 02:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00080 * 2 1 4 4 C 1.52997 * 109.47212 * 275.00347 * 3 2 1 5 5 H 1.09007 * 110.43783 * 307.54183 * 4 3 2 6 6 C 1.54890 * 110.48670 * 70.22087 * 4 3 2 7 7 C 1.54888 * 102.74996 * 156.61991 * 6 4 3 8 8 C 1.54270 * 104.19756 * 322.06245 * 7 6 4 9 9 C 1.53874 * 106.59709 * 23.60720 * 8 7 6 10 10 H 1.09000 * 110.03288 * 119.28794 * 9 8 7 11 11 O 1.42896 * 110.03310 * 240.71541 * 9 8 7 12 12 S 1.65596 * 120.00265 * 180.02562 * 2 1 3 13 13 O 1.42101 * 104.27728 * 26.06466 * 12 2 1 14 14 O 1.42101 * 104.28108 * 153.92463 * 12 2 1 15 15 C 1.81403 * 104.45087 * 269.99629 * 12 2 1 16 16 C 1.50695 * 109.47405 * 179.97438 * 15 12 2 17 17 H 1.08007 * 119.99967 * 359.97438 * 16 15 12 18 18 C 1.37881 * 120.00095 * 180.02562 * 16 15 12 19 19 N 1.31516 * 120.00079 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99743 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47180 * 90.00315 * 20 18 16 22 22 H 1.48507 * 109.46867 * 210.00042 * 20 18 16 23 23 H 1.48501 * 109.47417 * 329.99969 * 20 18 16 24 24 H 1.08993 * 109.47522 * 90.00073 * 1 2 3 25 25 H 1.08998 * 109.46906 * 210.00311 * 1 2 3 26 26 H 1.09003 * 109.46940 * 329.99268 * 1 2 3 27 27 H 1.09002 * 109.47068 * 35.00407 * 3 2 1 28 28 H 1.09001 * 109.47372 * 155.00495 * 3 2 1 29 29 H 1.08998 * 110.75888 * 274.94005 * 6 4 3 30 30 H 1.09004 * 110.75395 * 38.30810 * 6 4 3 31 31 H 1.08998 * 110.49376 * 203.38070 * 7 6 4 32 32 H 1.09001 * 110.59695 * 80.79264 * 7 6 4 33 33 H 1.09001 * 110.03076 * 264.32096 * 8 7 6 34 34 H 1.09000 * 110.03315 * 142.88945 * 8 7 6 35 35 H 0.96698 * 114.00550 * 297.16937 * 11 9 8 36 36 H 1.09000 * 109.47162 * 299.99966 * 15 12 2 37 37 H 1.09000 * 109.47109 * 59.99791 * 15 12 2 38 38 H 0.96998 * 120.00305 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3435 1.7733 -1.4370 5 1 2.7695 0.9963 -2.0718 6 6 0.9736 2.2385 -1.9901 7 6 1.3759 3.2272 -3.1124 8 6 2.6034 3.9676 -2.5423 9 6 3.2186 3.0432 -1.4771 10 1 4.2407 2.7838 -1.7531 11 8 3.2041 3.6881 -0.2020 12 16 2.2930 -1.4341 -0.0006 13 8 1.3969 -2.3559 -0.6061 14 8 3.5395 -1.1188 -0.6058 15 6 2.5194 -1.8268 1.7558 16 6 3.2695 -3.1272 1.8872 17 1 3.5788 -3.6640 1.0025 18 6 3.5602 -3.6323 3.1368 19 7 4.2144 -4.7674 3.2514 20 14 3.0247 -2.7041 4.6669 21 1 1.6699 -3.1574 5.0720 22 1 3.9852 -2.9693 5.7681 23 1 2.9936 -1.2480 4.3771 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8899 0.5140 27 1 1.6501 2.0043 0.5895 28 1 3.1858 1.1177 0.4342 29 1 0.4159 1.3960 -2.3990 30 1 0.3969 2.7459 -1.2167 31 1 0.5658 3.9287 -3.3114 32 1 1.6439 2.6877 -4.0208 33 1 2.2937 4.9081 -2.0867 34 1 3.3269 4.1567 -3.3353 35 1 3.7367 4.4942 -0.1628 36 1 3.0867 -1.0296 2.2362 37 1 1.5453 -1.9196 2.2359 38 1 4.4185 -5.1229 4.1305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581261379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:31 Heat of formation + Delta-G solvation = -162.402641 kcal Electronic energy + Delta-G solvation = -20766.202339 eV Core-core repulsion = 17541.152547 eV Total energy + Delta-G solvation = -3225.049792 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.12926 -38.04512 -37.15586 -36.75855 -35.47760 -35.33501 -31.77650 -31.06704 -28.67594 -27.39637 -25.19381 -24.44606 -21.63552 -20.88271 -19.73518 -19.50045 -18.34243 -18.04934 -17.54467 -17.01971 -16.54510 -16.06534 -15.64740 -15.56430 -14.82333 -14.71306 -14.55693 -14.40033 -14.25101 -13.69772 -13.56126 -13.29721 -13.16973 -13.04459 -12.71007 -12.64698 -12.61237 -12.24990 -12.13878 -11.91373 -11.87227 -11.81553 -11.44013 -11.34711 -11.27439 -10.94488 -10.73782 -9.83906 -8.45921 -6.62739 -0.51773 1.32643 1.35704 1.47391 1.95763 2.27105 2.85500 3.00805 3.35758 3.40116 3.64858 3.68470 3.85221 4.06853 4.38027 4.42824 4.43888 4.48524 4.52932 4.58309 4.68712 4.74373 4.82803 4.91648 4.94636 5.01975 5.05293 5.16383 5.21070 5.21556 5.26225 5.44038 5.48958 5.78316 5.80359 6.41545 7.01057 7.06112 8.69539 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027686 B = 0.005248 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.093436 B = 5333.605574 C = 5641.604544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.003 6.003 3 C 0.143 3.857 4 C -0.115 4.115 5 H 0.064 0.936 6 C -0.113 4.113 7 C -0.124 4.124 8 C -0.148 4.148 9 C 0.106 3.894 10 H 0.053 0.947 11 O -0.573 6.573 12 S 2.622 3.378 13 O -1.001 7.001 14 O -0.998 6.998 15 C -0.484 4.484 16 C -0.557 4.557 17 H 0.037 0.963 18 C 0.024 3.976 19 N -0.933 5.933 20 Si 0.953 3.047 21 H -0.255 1.255 22 H -0.276 1.276 23 H -0.234 1.234 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.393 0.607 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 22.271 -6.331 24.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.842 5.842 3 C 0.018 3.982 4 C -0.136 4.136 5 H 0.082 0.918 6 C -0.150 4.150 7 C -0.161 4.161 8 C -0.185 4.185 9 C 0.047 3.953 10 H 0.071 0.929 11 O -0.381 6.381 12 S 2.720 3.280 13 O -0.991 6.991 14 O -0.988 6.988 15 C -0.617 4.617 16 C -0.596 4.596 17 H 0.055 0.945 18 C -0.177 4.177 19 N -0.570 5.570 20 Si 0.774 3.226 21 H -0.179 1.179 22 H -0.201 1.201 23 H -0.157 1.157 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.243 0.757 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.887 21.193 -6.873 23.634 hybrid contribution 0.643 -0.037 0.893 1.101 sum -7.244 21.155 -5.979 23.147 Atomic orbital electron populations 1.21727 0.77110 1.04146 1.02812 1.57414 1.15960 1.20625 1.90191 1.21152 0.96285 0.84007 0.96736 1.22562 0.97457 0.96159 0.97375 0.91785 1.22586 0.95327 0.98715 0.98397 1.22335 0.97977 0.98110 0.97701 1.22863 0.98042 0.99167 0.98455 1.22358 0.97646 0.91576 0.83768 0.92878 1.86471 1.74542 1.44683 1.32424 1.04443 0.72645 0.72624 0.78303 1.93437 1.65634 1.64155 1.75877 1.93436 1.45979 1.83605 1.75793 1.28314 1.06557 1.04810 1.22059 1.20367 1.39198 1.05211 0.94821 0.94494 1.26054 0.93198 0.95385 1.03077 1.70022 1.39848 1.21007 1.26156 0.85612 0.79263 0.80817 0.76955 1.17942 1.20079 1.15697 0.92144 0.91485 0.87961 0.87608 0.91622 0.91903 0.89997 0.90044 0.91977 0.89472 0.90569 0.75712 0.87895 0.87805 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.06 9.30 127.77 1.19 3.25 16 2 N -1.00 -30.97 3.10 -539.14 -1.67 -32.63 16 3 C 0.14 3.92 3.96 86.38 0.34 4.26 16 4 C -0.12 -2.90 3.07 -9.72 -0.03 -2.93 16 5 H 0.06 1.97 8.00 -2.38 -0.02 1.95 16 6 C -0.11 -2.21 5.31 31.89 0.17 -2.04 16 7 C -0.12 -1.95 6.83 31.67 0.22 -1.74 16 8 C -0.15 -2.14 6.61 31.32 0.21 -1.93 16 9 C 0.11 2.12 4.12 31.32 0.13 2.24 16 10 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 11 O -0.57 -10.36 11.74 -148.98 -1.75 -12.11 16 12 S 2.62 112.58 5.24 -56.49 -0.30 112.29 16 13 O -1.00 -48.19 17.09 -127.65 -2.18 -50.37 16 14 O -1.00 -48.05 16.84 -127.65 -2.15 -50.20 16 15 C -0.48 -22.10 5.00 71.23 0.36 -21.74 16 16 C -0.56 -32.77 9.68 25.60 0.25 -32.52 16 17 H 0.04 2.43 7.96 -2.91 -0.02 2.41 16 18 C 0.02 1.40 5.47 84.66 0.46 1.87 16 19 N -0.93 -57.93 13.96 21.45 0.30 -57.64 16 20 Si 0.95 41.79 27.47 68.60 1.88 43.68 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.23 -9.12 6.54 99.48 0.65 -8.47 16 24 H 0.06 1.35 7.07 -2.39 -0.02 1.34 16 25 H 0.07 1.65 7.79 -2.39 -0.02 1.63 16 26 H 0.10 1.70 7.94 -2.39 -0.02 1.68 16 27 H 0.11 2.40 7.40 -2.39 -0.02 2.38 16 28 H 0.07 2.01 7.61 -2.39 -0.02 1.99 16 29 H 0.06 1.30 7.12 -2.39 -0.02 1.29 16 30 H 0.08 1.42 7.97 -2.38 -0.02 1.40 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.03 7.95 -2.39 -0.02 1.01 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.39 3.65 9.11 -74.06 -0.67 2.97 16 36 H 0.10 4.28 7.20 -2.39 -0.02 4.26 16 37 H 0.10 4.19 7.57 -2.39 -0.02 4.17 16 38 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -77.90 317.11 -2.25 -80.15 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.32 Total: 18.11 kcal Atomic # 6 Polarization: -54.56 SS G_CDS: 3.29 Total: -51.28 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -1.37 Total: -90.27 kcal Atomic # 8 Polarization: -106.60 SS G_CDS: -6.08 Total: -112.68 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.88 Total: 43.68 kcal Atomic # 16 Polarization: 112.58 SS G_CDS: -0.30 Total: 112.29 kcal Total: -77.90 -2.25 -80.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581261379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.250 kcal (2) G-P(sol) polarization free energy of solvation -77.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds