Wall clock time and date at job start Mon Mar 30 2020 02:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 119.99702 * 2 1 4 4 C 1.53000 * 109.46814 * 85.00523 * 3 2 1 5 5 H 1.09005 * 110.67189 * 56.78200 * 4 3 2 6 6 C 1.54888 * 110.75784 * 293.54612 * 4 3 2 7 7 C 1.54261 * 104.19672 * 203.55965 * 6 4 3 8 8 C 1.53876 * 106.59990 * 23.60631 * 7 6 4 9 9 C 1.54267 * 106.59870 * 0.02562 * 8 7 6 10 10 H 1.09004 * 110.48597 * 95.06674 * 9 8 7 11 11 O 1.42902 * 110.48799 * 217.71227 * 9 8 7 12 12 S 1.65597 * 120.00340 * 180.02562 * 2 1 3 13 13 O 1.42106 * 104.27761 * 26.06267 * 12 2 1 14 14 O 1.42093 * 104.28294 * 153.92602 * 12 2 1 15 15 C 1.81406 * 104.44457 * 269.99426 * 12 2 1 16 16 C 1.50701 * 109.47182 * 179.97438 * 15 12 2 17 17 H 1.08004 * 119.99911 * 0.02562 * 16 15 12 18 18 C 1.37874 * 120.00073 * 180.02562 * 16 15 12 19 19 N 1.31513 * 120.00231 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99957 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46909 * 89.99762 * 20 18 16 22 22 H 1.48499 * 109.47040 * 209.99831 * 20 18 16 23 23 H 1.48501 * 109.47057 * 329.99759 * 20 18 16 24 24 H 1.09003 * 109.47732 * 89.99775 * 1 2 3 25 25 H 1.09000 * 109.46983 * 209.99411 * 1 2 3 26 26 H 1.09000 * 109.47429 * 329.99450 * 1 2 3 27 27 H 1.08999 * 109.47354 * 325.00225 * 3 2 1 28 28 H 1.08999 * 109.47197 * 205.00393 * 3 2 1 29 29 H 1.09000 * 110.48622 * 84.87747 * 6 4 3 30 30 H 1.08999 * 110.48451 * 322.23560 * 6 4 3 31 31 H 1.08998 * 110.03492 * 264.32506 * 7 6 4 32 32 H 1.08994 * 110.03470 * 142.89082 * 7 6 4 33 33 H 1.08995 * 110.03160 * 119.28453 * 8 7 6 34 34 H 1.08998 * 110.03319 * 240.71542 * 8 7 6 35 35 H 0.96703 * 113.99491 * 298.54487 * 11 9 8 36 36 H 1.09000 * 109.47412 * 299.99667 * 15 12 2 37 37 H 1.09001 * 109.47128 * 60.00369 * 15 12 2 38 38 H 0.97001 * 120.00110 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3436 1.7732 1.4370 5 1 2.8391 1.0270 2.0583 6 6 0.9632 2.1514 2.0291 7 6 1.2952 3.1587 3.1494 8 6 2.6615 3.7729 2.7975 9 6 3.1118 3.1179 1.4754 10 1 2.8328 3.7417 0.6262 11 8 4.5221 2.8874 1.4863 12 16 2.2930 -1.4341 -0.0006 13 8 1.3969 -2.3559 -0.6061 14 8 3.5394 -1.1189 -0.6057 15 6 2.5195 -1.8266 1.7559 16 6 3.2696 -3.1270 1.8874 17 1 3.5795 -3.6635 1.0027 18 6 3.5602 -3.6320 3.1370 19 7 3.1833 -2.9785 4.2142 20 14 4.4907 -5.2436 3.2999 21 1 5.9497 -4.9705 3.3439 22 1 4.0775 -5.9294 4.5505 23 1 4.1846 -6.1119 2.1348 24 1 -0.3635 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3634 0.8899 0.5139 27 1 1.6500 2.0044 -0.5894 28 1 3.1856 1.1178 -0.4344 29 1 0.4708 1.2708 2.4415 30 1 0.3373 2.6189 1.2691 31 1 1.3530 2.6446 4.1087 32 1 0.5344 3.9382 3.1882 33 1 2.5636 4.8504 2.6656 34 1 3.3822 3.5568 3.5862 35 1 5.0515 3.6925 1.5686 36 1 3.0868 -1.0294 2.2362 37 1 1.5453 -1.9195 2.2360 38 1 3.3874 -3.3340 5.0934 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581261392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:34 Heat of formation + Delta-G solvation = -138.159515 kcal Electronic energy + Delta-G solvation = -20970.891542 eV Core-core repulsion = 17746.893011 eV Total energy + Delta-G solvation = -3223.998531 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.07008 -36.13279 -36.01228 -34.94522 -34.54764 -33.30170 -30.01494 -28.96517 -27.72831 -26.25399 -23.75778 -23.00301 -20.61872 -20.11790 -18.11255 -17.26715 -17.14541 -16.27358 -15.76237 -15.69914 -15.13890 -15.00835 -14.26868 -14.00935 -13.53870 -13.43093 -13.02125 -12.62617 -12.53745 -12.31459 -12.12872 -11.98571 -11.48743 -11.39751 -11.22563 -11.13044 -11.06118 -10.88611 -10.85554 -10.61669 -10.55371 -10.37028 -10.29312 -9.88647 -9.76542 -9.28749 -8.67073 -8.40155 -6.29211 -4.39343 1.36316 3.23994 3.29007 3.35095 3.51879 4.23639 4.27636 4.57902 4.60057 4.88896 4.90358 5.02830 5.11958 5.19416 5.30133 5.38200 5.45950 5.54602 5.58969 5.66135 5.78974 5.86505 5.92798 6.03087 6.05907 6.12952 6.17390 6.22364 6.42385 6.44855 6.73025 6.87361 7.11312 7.48669 7.74569 7.79949 8.62446 9.27869 10.82415 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.006582 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.007828 B = 4252.769227 C = 4967.519295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -1.011 6.011 3 C 0.129 3.871 4 C -0.112 4.112 5 H 0.096 0.904 6 C -0.117 4.117 7 C -0.122 4.122 8 C -0.157 4.157 9 C 0.104 3.896 10 H 0.061 0.939 11 O -0.556 6.556 12 S 2.580 3.420 13 O -0.980 6.980 14 O -0.977 6.977 15 C -0.417 4.417 16 C -0.533 4.533 17 H 0.068 0.932 18 C 0.077 3.923 19 N -0.878 5.878 20 Si 0.903 3.097 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.267 1.267 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.373 0.627 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.590 14.843 -2.307 15.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.846 5.846 3 C 0.003 3.997 4 C -0.132 4.132 5 H 0.115 0.885 6 C -0.154 4.154 7 C -0.160 4.160 8 C -0.195 4.195 9 C 0.045 3.955 10 H 0.079 0.921 11 O -0.361 6.361 12 S 2.680 3.320 13 O -0.971 6.971 14 O -0.967 6.967 15 C -0.553 4.553 16 C -0.573 4.573 17 H 0.086 0.914 18 C -0.129 4.129 19 N -0.514 5.514 20 Si 0.729 3.271 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.191 1.191 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.219 0.781 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.577 13.790 -3.017 14.839 hybrid contribution 0.446 0.099 1.062 1.156 sum -4.131 13.889 -1.955 14.622 Atomic orbital electron populations 1.21440 0.79553 1.02737 1.01382 1.57685 1.14457 1.21628 1.90806 1.21238 0.97962 0.85448 0.95075 1.22727 0.95423 0.96757 0.98273 0.88530 1.22435 0.96429 0.99138 0.97416 1.22051 0.96091 0.98384 0.99491 1.22870 0.98396 0.99601 0.98679 1.22677 0.81113 0.96045 0.95689 0.92073 1.86663 1.16769 1.35942 1.96733 1.06068 0.73170 0.72081 0.80654 1.93465 1.65086 1.61989 1.76527 1.93460 1.43937 1.82815 1.76513 1.27777 1.06346 1.06232 1.14958 1.20331 1.38492 1.04444 0.94006 0.91383 1.24911 0.94925 0.97858 0.95238 1.69954 1.44697 1.38771 0.97991 0.86398 0.80135 0.82474 0.78118 1.19894 1.20651 1.19099 0.93313 0.91205 0.91336 0.91034 0.88481 0.90483 0.91449 0.91383 0.91995 0.91919 0.90711 0.78084 0.89664 0.89978 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.32 9.79 59.84 0.59 1.91 16 2 N -1.01 -17.27 3.07 -121.76 -0.37 -17.65 16 3 C 0.13 1.94 5.22 -4.04 -0.02 1.92 16 4 C -0.11 -1.60 2.85 -88.61 -0.25 -1.85 16 5 H 0.10 1.70 6.93 -51.93 -0.36 1.34 16 6 C -0.12 -1.37 4.56 -25.08 -0.11 -1.49 16 7 C -0.12 -1.31 6.80 -25.61 -0.17 -1.48 16 8 C -0.16 -1.64 6.55 -25.61 -0.17 -1.81 16 9 C 0.10 1.25 3.69 -25.06 -0.09 1.16 16 10 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 11 O -0.56 -7.50 13.38 -35.23 -0.47 -7.97 16 12 S 2.58 57.58 5.30 -107.50 -0.57 57.01 16 13 O -0.98 -23.93 17.09 -57.54 -0.98 -24.92 16 14 O -0.98 -24.12 16.53 -57.54 -0.95 -25.07 16 15 C -0.42 -10.35 5.93 36.01 0.21 -10.13 16 16 C -0.53 -15.09 9.13 -34.44 -0.31 -15.41 16 17 H 0.07 1.90 7.71 -52.48 -0.40 1.50 16 18 C 0.08 2.15 5.46 -17.82 -0.10 2.06 16 19 N -0.88 -25.07 13.29 55.43 0.74 -24.33 16 20 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.01 7.79 -51.93 -0.40 0.60 16 26 H 0.07 0.75 5.46 -51.93 -0.28 0.47 16 27 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.10 1.66 6.82 -51.93 -0.35 1.31 16 29 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 30 H 0.07 0.67 7.31 -51.93 -0.38 0.29 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.37 3.13 9.11 45.56 0.42 3.55 16 36 H 0.09 2.13 6.93 -51.92 -0.36 1.77 16 37 H 0.08 2.00 8.14 -51.92 -0.42 1.58 16 38 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 318.45 15.07 4.80 4.80 Total: -1.00 -34.77 318.45 -8.30 -43.08 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.03 Total: 3.84 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: -0.43 Total: -25.12 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.36 Total: -41.98 kcal Atomic # 8 Polarization: -55.55 SS G_CDS: -2.41 Total: -57.96 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 57.58 SS G_CDS: -0.57 Total: 57.01 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.77 -8.30 -43.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581261392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.082 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds