Wall clock time and date at job start Mon Mar 30 2020 02:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 119.99702 * 2 1 4 4 C 1.53000 * 109.46814 * 85.00523 * 3 2 1 5 5 H 1.09005 * 110.67189 * 56.78200 * 4 3 2 6 6 C 1.54888 * 110.75784 * 293.54612 * 4 3 2 7 7 C 1.54261 * 104.19672 * 203.55965 * 6 4 3 8 8 C 1.53876 * 106.59990 * 23.60631 * 7 6 4 9 9 C 1.54267 * 106.59870 * 0.02562 * 8 7 6 10 10 H 1.09004 * 110.48597 * 95.06674 * 9 8 7 11 11 O 1.42902 * 110.48799 * 217.71227 * 9 8 7 12 12 S 1.65597 * 120.00340 * 180.02562 * 2 1 3 13 13 O 1.42106 * 104.27761 * 26.06267 * 12 2 1 14 14 O 1.42093 * 104.28294 * 153.92602 * 12 2 1 15 15 C 1.81406 * 104.44457 * 269.99426 * 12 2 1 16 16 C 1.50701 * 109.47182 * 179.97438 * 15 12 2 17 17 H 1.08004 * 119.99911 * 0.02562 * 16 15 12 18 18 C 1.37874 * 120.00073 * 180.02562 * 16 15 12 19 19 N 1.31513 * 120.00231 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99957 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46909 * 89.99762 * 20 18 16 22 22 H 1.48499 * 109.47040 * 209.99831 * 20 18 16 23 23 H 1.48501 * 109.47057 * 329.99759 * 20 18 16 24 24 H 1.09003 * 109.47732 * 89.99775 * 1 2 3 25 25 H 1.09000 * 109.46983 * 209.99411 * 1 2 3 26 26 H 1.09000 * 109.47429 * 329.99450 * 1 2 3 27 27 H 1.08999 * 109.47354 * 325.00225 * 3 2 1 28 28 H 1.08999 * 109.47197 * 205.00393 * 3 2 1 29 29 H 1.09000 * 110.48622 * 84.87747 * 6 4 3 30 30 H 1.08999 * 110.48451 * 322.23560 * 6 4 3 31 31 H 1.08998 * 110.03492 * 264.32506 * 7 6 4 32 32 H 1.08994 * 110.03470 * 142.89082 * 7 6 4 33 33 H 1.08995 * 110.03160 * 119.28453 * 8 7 6 34 34 H 1.08998 * 110.03319 * 240.71542 * 8 7 6 35 35 H 0.96703 * 113.99491 * 298.54487 * 11 9 8 36 36 H 1.09000 * 109.47412 * 299.99667 * 15 12 2 37 37 H 1.09001 * 109.47128 * 60.00369 * 15 12 2 38 38 H 0.97001 * 120.00110 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3436 1.7732 1.4370 5 1 2.8391 1.0270 2.0583 6 6 0.9632 2.1514 2.0291 7 6 1.2952 3.1587 3.1494 8 6 2.6615 3.7729 2.7975 9 6 3.1118 3.1179 1.4754 10 1 2.8328 3.7417 0.6262 11 8 4.5221 2.8874 1.4863 12 16 2.2930 -1.4341 -0.0006 13 8 1.3969 -2.3559 -0.6061 14 8 3.5394 -1.1189 -0.6057 15 6 2.5195 -1.8266 1.7559 16 6 3.2696 -3.1270 1.8874 17 1 3.5795 -3.6635 1.0027 18 6 3.5602 -3.6320 3.1370 19 7 3.1833 -2.9785 4.2142 20 14 4.4907 -5.2436 3.2999 21 1 5.9497 -4.9705 3.3439 22 1 4.0775 -5.9294 4.5505 23 1 4.1846 -6.1119 2.1348 24 1 -0.3635 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3634 0.8899 0.5139 27 1 1.6500 2.0044 -0.5894 28 1 3.1856 1.1178 -0.4344 29 1 0.4708 1.2708 2.4415 30 1 0.3373 2.6189 1.2691 31 1 1.3530 2.6446 4.1087 32 1 0.5344 3.9382 3.1882 33 1 2.5636 4.8504 2.6656 34 1 3.3822 3.5568 3.5862 35 1 5.0515 3.6925 1.5686 36 1 3.0868 -1.0294 2.2362 37 1 1.5453 -1.9195 2.2360 38 1 3.3874 -3.3340 5.0934 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581261392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:34 Heat of formation + Delta-G solvation = -166.051648 kcal Electronic energy + Delta-G solvation = -20972.101036 eV Core-core repulsion = 17746.893011 eV Total energy + Delta-G solvation = -3225.208025 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.06685 -38.03474 -37.24694 -36.81093 -35.62301 -35.41632 -31.15229 -30.99656 -28.64812 -27.37038 -25.69107 -24.41192 -21.50850 -21.16871 -19.76984 -19.09405 -18.30833 -18.09086 -17.43059 -17.20170 -16.44486 -16.15087 -16.04563 -15.40090 -14.69144 -14.53327 -14.48860 -14.17674 -14.03494 -13.63867 -13.62097 -13.44069 -13.19930 -13.04463 -12.86319 -12.75143 -12.58552 -12.54279 -12.35029 -12.00415 -11.85430 -11.64366 -11.40386 -11.23782 -11.11886 -10.80385 -10.77810 -9.81432 -8.42570 -6.61265 -0.44365 1.34967 1.36878 1.48720 1.92858 2.29886 2.90444 3.02075 3.34352 3.39872 3.65264 3.66445 3.90199 4.06394 4.36191 4.41926 4.45886 4.53443 4.59868 4.65921 4.70869 4.77242 4.80947 4.90884 4.92815 5.01049 5.06644 5.14983 5.22265 5.28419 5.31662 5.40212 5.50169 5.71209 5.78731 6.48841 7.01955 7.10092 8.69757 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.006582 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.007828 B = 4252.769227 C = 4967.519295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.002 6.002 3 C 0.125 3.875 4 C -0.122 4.122 5 H 0.049 0.951 6 C -0.114 4.114 7 C -0.122 4.122 8 C -0.152 4.152 9 C 0.104 3.896 10 H 0.092 0.908 11 O -0.589 6.589 12 S 2.611 3.389 13 O -1.001 7.001 14 O -1.003 7.003 15 C -0.427 4.427 16 C -0.570 4.570 17 H 0.061 0.939 18 C 0.026 3.974 19 N -0.906 5.906 20 Si 0.963 3.037 21 H -0.265 1.265 22 H -0.266 1.266 23 H -0.262 1.262 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.393 0.607 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.609 16.568 -2.843 17.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.840 5.840 3 C 0.000 4.000 4 C -0.142 4.142 5 H 0.067 0.933 6 C -0.151 4.151 7 C -0.160 4.160 8 C -0.190 4.190 9 C 0.045 3.955 10 H 0.110 0.890 11 O -0.397 6.397 12 S 2.710 3.290 13 O -0.991 6.991 14 O -0.993 6.993 15 C -0.560 4.560 16 C -0.608 4.608 17 H 0.079 0.921 18 C -0.177 4.177 19 N -0.542 5.542 20 Si 0.784 3.216 21 H -0.190 1.190 22 H -0.190 1.190 23 H -0.186 1.186 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.124 0.876 27 H 0.135 0.865 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.242 0.758 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.587 15.520 -3.528 16.868 hybrid contribution 0.731 -0.338 1.217 1.459 sum -4.857 15.182 -2.311 16.107 Atomic orbital electron populations 1.21784 0.77090 1.04215 1.02978 1.57278 1.15874 1.20551 1.90314 1.21472 0.97225 0.85026 0.96237 1.22732 0.97386 0.97113 0.96964 0.93255 1.22455 0.95051 0.99156 0.98459 1.22068 0.97105 0.98695 0.98135 1.22833 0.97634 1.01265 0.97252 1.22799 0.80220 0.94834 0.97678 0.89014 1.86612 1.18061 1.38115 1.96909 1.04778 0.72648 0.72880 0.78698 1.93426 1.65464 1.63987 1.76238 1.93417 1.45942 1.83612 1.76368 1.27816 1.05353 1.04703 1.18178 1.20758 1.39636 1.06108 0.94335 0.92075 1.25837 0.95626 1.01413 0.94845 1.70034 1.45357 1.40295 0.98517 0.85484 0.79064 0.78275 0.78730 1.18984 1.19011 1.18623 0.91609 0.92159 0.87590 0.86477 0.90993 0.91946 0.88235 0.93239 0.89217 0.88815 0.92375 0.75769 0.90964 0.90502 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.16 9.79 127.77 1.25 3.41 16 2 N -1.00 -33.49 3.07 -539.13 -1.66 -35.15 16 3 C 0.13 3.60 5.22 86.38 0.45 4.05 16 4 C -0.12 -3.41 2.85 -9.49 -0.03 -3.44 16 5 H 0.05 1.84 6.93 -2.38 -0.02 1.83 16 6 C -0.11 -2.42 4.56 31.67 0.14 -2.28 16 7 C -0.12 -2.34 6.80 31.32 0.21 -2.13 16 8 C -0.15 -2.82 6.55 31.32 0.21 -2.62 16 9 C 0.10 2.30 3.69 31.68 0.12 2.41 16 10 H 0.09 1.48 8.05 -2.38 -0.02 1.47 16 11 O -0.59 -15.67 13.38 -148.98 -1.99 -17.66 16 12 S 2.61 119.39 5.30 -56.49 -0.30 119.09 16 13 O -1.00 -49.43 17.09 -127.65 -2.18 -51.61 16 14 O -1.00 -50.89 16.53 -127.65 -2.11 -53.00 16 15 C -0.43 -22.23 5.93 71.24 0.42 -21.81 16 16 C -0.57 -33.43 9.13 25.60 0.23 -33.20 16 17 H 0.06 3.55 7.71 -2.91 -0.02 3.53 16 18 C 0.03 1.49 5.46 84.65 0.46 1.96 16 19 N -0.91 -53.00 13.29 21.45 0.28 -52.72 16 20 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 21 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 1.68 7.79 -2.39 -0.02 1.67 16 26 H 0.11 1.93 5.46 -2.39 -0.01 1.92 16 27 H 0.12 2.34 8.07 -2.39 -0.02 2.32 16 28 H 0.07 2.45 6.82 -2.39 -0.02 2.44 16 29 H 0.06 1.51 7.69 -2.39 -0.02 1.49 16 30 H 0.10 1.49 7.31 -2.39 -0.02 1.47 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.27 8.07 -2.39 -0.02 1.25 16 35 H 0.39 6.23 9.11 -74.06 -0.67 5.56 16 36 H 0.07 3.88 6.93 -2.39 -0.02 3.86 16 37 H 0.08 3.96 8.14 -2.39 -0.02 3.95 16 38 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -77.47 318.45 -2.08 -79.55 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.38 Total: 19.02 kcal Atomic # 6 Polarization: -57.11 SS G_CDS: 3.47 Total: -53.63 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -1.37 Total: -87.87 kcal Atomic # 8 Polarization: -115.98 SS G_CDS: -6.28 Total: -122.27 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 119.39 SS G_CDS: -0.30 Total: 119.09 kcal Total: -77.47 -2.08 -79.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581261392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.504 kcal (2) G-P(sol) polarization free energy of solvation -77.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds